Query 034991
Match_columns 77
No_of_seqs 104 out of 165
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:17:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08571 Yos1: Yos1-like; Int 100.0 4.8E-42 1E-46 220.0 7.8 75 3-77 1-80 (80)
2 KOG4779 Predicted membrane pro 100.0 2.9E-37 6.3E-42 197.6 6.7 77 1-77 3-82 (82)
3 PRK09891 cold shock gene; Prov 56.3 5.3 0.00011 25.3 0.7 20 4-23 15-34 (76)
4 PF12759 HTH_Tnp_IS1: InsA C-t 38.8 42 0.0009 19.6 2.6 32 39-70 5-40 (46)
5 PF04796 RepA_C: Plasmid encod 36.2 28 0.0006 24.6 1.9 31 24-54 34-64 (161)
6 COG2119 Predicted membrane pro 31.9 37 0.0008 25.1 2.0 21 44-64 18-38 (190)
7 COG4095 Uncharacterized conser 30.1 79 0.0017 20.8 3.1 33 43-75 44-76 (89)
8 COG4660 RnfE Predicted NADH:ub 27.4 19 0.00042 27.0 -0.1 11 60-70 102-112 (212)
9 COG2020 STE14 Putative protein 25.9 33 0.00072 24.1 0.9 20 9-28 146-165 (187)
10 PF09900 DUF2127: Predicted me 23.5 1.4E+02 0.0031 20.3 3.6 67 2-74 71-137 (141)
11 PF03875 Statherin: Statherin; 21.6 15 0.00033 21.1 -1.3 10 21-30 3-12 (42)
12 PF06198 DUF999: Protein of un 21.3 40 0.00087 23.6 0.5 20 54-73 80-100 (143)
13 COG0774 LpxC UDP-3-O-acyl-N-ac 20.5 52 0.0011 26.0 1.0 35 15-56 214-248 (300)
14 PF07126 DUF1379: Protein of u 20.2 53 0.0012 23.1 1.0 18 10-30 55-72 (153)
No 1
>PF08571 Yos1: Yos1-like; InterPro: IPR013880 In yeast, Yos1 is a subunit of the Yip1p-Yif1p complex and is required for transport between the endoplasmic reticulum and the Golgi complex. Yos1 appears to be conserved in eukaryotes [].
Probab=100.00 E-value=4.8e-42 Score=220.05 Aligned_cols=75 Identities=56% Similarity=0.778 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccccCCCCccccc----CCCchHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhHhcC
Q 034991 3 LWTLLEGFLLLANALAIINEDRFLAPRGWSFSEFSV----GRTKSLKGQIIGLIYATQ-YMRVPLILLNAICIVVKLVSG 77 (77)
Q Consensus 3 l~~ll~a~lL~~NAiaILnE~RFL~k~Gw~~~~~~~----~~~~s~K~qii~LI~avr-~mRiPLI~iN~i~Iv~~Ll~G 77 (77)
||+++|+++||+||+|||||||||+|+||++++.++ ++++|+|+|+++||+||| |||+|||++|+++|+|||+||
T Consensus 1 l~~Ll~a~LL~iNAiAILnE~RFL~kiGw~~~~~~~~g~~~~~~siK~qii~LI~aVrT~mRiPLI~iN~~vIv~~Lv~G 80 (80)
T PF08571_consen 1 LGSLLYASLLLINAIAILNEDRFLAKIGWSSSQNSGFGFGGDPNSIKAQIINLIRAVRTLMRIPLIFINILVIVYELVFG 80 (80)
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHhccCCCCCccccccccCCCCcCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhC
Confidence 699999999999999999999999999999887643 378999999999999999 999999999999999999998
No 2
>KOG4779 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.9e-37 Score=197.62 Aligned_cols=77 Identities=45% Similarity=0.697 Sum_probs=73.0
Q ss_pred CchHHHHHHHHHHHHHHHhhcccccccccCCCCcccc-cC-CCchHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhHhcC
Q 034991 1 MGLWTLLEGFLLLANALAIINEDRFLAPRGWSFSEFS-VG-RTKSLKGQIIGLIYATQ-YMRVPLILLNAICIVVKLVSG 77 (77)
Q Consensus 1 ~~l~~ll~a~lL~~NAiaILnE~RFL~k~Gw~~~~~~-~~-~~~s~K~qii~LI~avr-~mRiPLI~iN~i~Iv~~Ll~G 77 (77)
|||++++|+++||+||+|||||||||+|+||+.++.. +| +++++|+|+++||+||| +||+|||++|+++|+|+|++|
T Consensus 3 Fglg~llyv~LLlvNAvAvLsEeRFL~riGws~d~~~gFG~~q~tiKS~~~~LIravrTvmrvPLI~iN~ivIVy~LllG 82 (82)
T KOG4779|consen 3 FGLGSLLYVALLLVNAVAVLSEERFLKRIGWSTDQGIGFGEDQPTIKSQLMNLIRAVRTVMRVPLIIINSIVIVYLLLLG 82 (82)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCcccCcccCCCCccHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHhC
Confidence 7999999999999999999999999999999998764 34 47999999999999999 999999999999999999998
No 3
>PRK09891 cold shock gene; Provisional
Probab=56.25 E-value=5.3 Score=25.26 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 034991 4 WTLLEGFLLLANALAIINED 23 (77)
Q Consensus 4 ~~ll~a~lL~~NAiaILnE~ 23 (77)
+.++-+++.+.||+||.++.
T Consensus 15 gaffisalfffnavcivsdn 34 (76)
T PRK09891 15 GAFFISALFFFNAVCIVSDN 34 (76)
T ss_pred hhHHHHHHHHhceeeEeeCC
Confidence 45778899999999998873
No 4
>PF12759 HTH_Tnp_IS1: InsA C-terminal domain; InterPro: IPR024431 This entry represents the helix-turn-helix domain found at the C-terminal of InsA.
Probab=38.84 E-value=42 Score=19.62 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=24.4
Q ss_pred CCCchHHHHHHHHHH---HHH-hhhHHHHHHHHHHH
Q 034991 39 GRTKSLKGQIIGLIY---ATQ-YMRVPLILLNAICI 70 (77)
Q Consensus 39 ~~~~s~K~qii~LI~---avr-~mRiPLI~iN~i~I 70 (77)
+..+++|.||+++.. .+| --|+-=|.+|++.=
T Consensus 5 A~kpgikeqIvema~nG~GiRdtaRvL~I~~nTVlr 40 (46)
T PF12759_consen 5 ARKPGIKEQIVEMAFNGSGIRDTARVLKISINTVLR 40 (46)
T ss_pred ccCccHHHHHHHHHhcCCcchhhHhHhcchHHHHHH
Confidence 345899999999974 567 66777778888763
No 5
>PF04796 RepA_C: Plasmid encoded RepA protein; InterPro: IPR006881 This is a family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood [].
Probab=36.17 E-value=28 Score=24.62 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=21.3
Q ss_pred ccccccCCCCcccccCCCchHHHHHHHHHHH
Q 034991 24 RFLAPRGWSFSEFSVGRTKSLKGQIIGLIYA 54 (77)
Q Consensus 24 RFL~k~Gw~~~~~~~~~~~s~K~qii~LI~a 54 (77)
-||+++|.+.+....|+-..+|.|+-.|.++
T Consensus 34 ~flr~lG~~~tGG~~g~~~~lreQ~~rL~~~ 64 (161)
T PF04796_consen 34 EFLRRLGLSPTGGRRGTITRLREQMERLFAC 64 (161)
T ss_pred HHHHHhCCCCCCCCcccHHHHHHHHHHHHhh
Confidence 4888888877322223457899999888765
No 6
>COG2119 Predicted membrane protein [Function unknown]
Probab=31.90 E-value=37 Score=25.13 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q 034991 44 LKGQIIGLIYATQYMRVPLIL 64 (77)
Q Consensus 44 ~K~qii~LI~avr~mRiPLI~ 64 (77)
=|.|++.++.|-||-|+|.+.
T Consensus 18 DKT~lia~llA~r~~~~~v~~ 38 (190)
T COG2119 18 DKTQLIAMLLAMRYRRWPVFA 38 (190)
T ss_pred cHHHHHHHHHHHhcCCchhHH
Confidence 399999999999977999864
No 7
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=30.11 E-value=79 Score=20.83 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhHh
Q 034991 43 SLKGQIIGLIYATQYMRVPLILLNAICIVVKLV 75 (77)
Q Consensus 43 s~K~qii~LI~avr~mRiPLI~iN~i~Iv~~Ll 75 (77)
..-+-...|+++++.+-.|++..|++..+..++
T Consensus 44 ~~ia~~lwliygILi~~lPii~aN~i~~il~li 76 (89)
T COG4095 44 LNIALFLWLIYGILINDLPIIIANIISFILSLI 76 (89)
T ss_pred HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 345667889999999999999999988776553
No 8
>COG4660 RnfE Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Energy production and conversion]
Probab=27.35 E-value=19 Score=26.98 Aligned_cols=11 Identities=55% Similarity=0.954 Sum_probs=9.2
Q ss_pred HHHHHHHHHHH
Q 034991 60 VPLILLNAICI 70 (77)
Q Consensus 60 iPLI~iN~i~I 70 (77)
+|||+.|.++|
T Consensus 102 IPLIVtNCIii 112 (212)
T COG4660 102 IPLIVTNCIVI 112 (212)
T ss_pred hhhheeeeeEe
Confidence 89999998765
No 9
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=25.87 E-value=33 Score=24.05 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhcccccccc
Q 034991 9 GFLLLANALAIINEDRFLAP 28 (77)
Q Consensus 9 a~lL~~NAiaILnE~RFL~k 28 (77)
+...++|.+.|..|||+|..
T Consensus 146 ~~~~~~~~~~i~~EEr~L~~ 165 (187)
T COG2020 146 VLVALLFLFRIREEERYLRA 165 (187)
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 34556777899999999975
No 10
>PF09900 DUF2127: Predicted membrane protein (DUF2127); InterPro: IPR021125 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=23.51 E-value=1.4e+02 Score=20.26 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHHHHHhhcccccccccCCCCcccccCCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhH
Q 034991 2 GLWTLLEGFLLLANALAIINEDRFLAPRGWSFSEFSVGRTKSLKGQIIGLIYATQYMRVPLILLNAICIVVKL 74 (77)
Q Consensus 2 ~l~~ll~a~lL~~NAiaILnE~RFL~k~Gw~~~~~~~~~~~s~K~qii~LI~avr~mRiPLI~iN~i~Iv~~L 74 (77)
+++.+.|+.+-++=|..-..++|+=...+.... .--+=-|+-.+++..-.+|+-+-.+|+++++|.+
T Consensus 71 a~~~~~Ya~l~lvea~GLw~~k~Wae~lav~~~------~~fiP~Eiyel~~~~s~~~~~~l~~Nv~iV~yl~ 137 (141)
T PF09900_consen 71 ALYLLAYALLRLVEAYGLWRGKRWAEWLAVIST------GIFIPYEIYELIRHPSWLKILVLLVNVAIVVYLL 137 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHH------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999886665544221 1245567888888777889999999999999875
No 11
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=21.62 E-value=15 Score=21.07 Aligned_cols=10 Identities=40% Similarity=0.793 Sum_probs=8.0
Q ss_pred cccccccccC
Q 034991 21 NEDRFLAPRG 30 (77)
Q Consensus 21 nE~RFL~k~G 30 (77)
|||.||.++|
T Consensus 3 seekflrrl~ 12 (42)
T PF03875_consen 3 SEEKFLRRLG 12 (42)
T ss_pred hHHHHHHHHH
Confidence 6888988865
No 12
>PF06198 DUF999: Protein of unknown function (DUF999); InterPro: IPR009340 This is a family of conserved Schizosaccharomyces pombe proteins with unknown function.
Probab=21.29 E-value=40 Score=23.62 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=17.0
Q ss_pred HHH-hhhHHHHHHHHHHHHHh
Q 034991 54 ATQ-YMRVPLILLNAICIVVK 73 (77)
Q Consensus 54 avr-~mRiPLI~iN~i~Iv~~ 73 (77)
|.| -.|+||.++=+++|++.
T Consensus 80 st~~~~rw~lliiw~ii~v~~ 100 (143)
T PF06198_consen 80 STRSKSRWPLLIIWSIIIVFA 100 (143)
T ss_pred ccccccccHHHHHHHHHHhee
Confidence 567 89999999999888864
No 13
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=20.46 E-value=52 Score=25.96 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=25.4
Q ss_pred HHHHhhcccccccccCCCCcccccCCCchHHHHHHHHHHHHH
Q 034991 15 NALAIINEDRFLAPRGWSFSEFSVGRTKSLKGQIIGLIYATQ 56 (77)
Q Consensus 15 NAiaILnE~RFL~k~Gw~~~~~~~~~~~s~K~qii~LI~avr 56 (77)
||+.| .|+|.|++=|+-.. +.-+|.|+.++|--.-
T Consensus 214 NaiVi-dd~~vlN~~gLRf~------dEfVRHKiLDaiGDL~ 248 (300)
T COG0774 214 NAIVI-DDDRVLNPEGLRFE------DEFVRHKILDAIGDLY 248 (300)
T ss_pred ceEEE-CCCceeCCccccCC------CcchhhhHHHhhhhHH
Confidence 77765 88999998888653 3578888888775443
No 14
>PF07126 DUF1379: Protein of unknown function (DUF1379); InterPro: IPR009809 This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.
Probab=20.22 E-value=53 Score=23.12 Aligned_cols=18 Identities=44% Similarity=0.510 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhcccccccccC
Q 034991 10 FLLLANALAIINEDRFLAPRG 30 (77)
Q Consensus 10 ~lL~~NAiaILnE~RFL~k~G 30 (77)
+=|.+||+|. .||+++..
T Consensus 55 ~elaLnA~Aa---~rF~KP~m 72 (153)
T PF07126_consen 55 AELALNAVAA---KRFLKPQM 72 (153)
T ss_pred HHHHHHHHHH---HHhCCCCC
Confidence 3478999997 59999854
Done!