Query 034991
Match_columns 77
No_of_seqs 104 out of 165
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 13:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034991.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034991hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2av5a1 d.58.59.1 (A:15-120) R 28.1 5.6 0.00041 23.2 -0.1 10 22-31 96-105 (106)
2 d1t98a1 a.4.5.65 (A:8-118) Chr 23.8 15 0.0011 22.6 1.4 20 11-30 22-41 (111)
3 d1l6ja1 a.20.1.2 (A:29-105) Ge 22.6 10 0.00074 21.1 0.4 13 23-35 18-30 (77)
4 d2czvc1 d.58.59.1 (C:3-120) RN 22.3 8.2 0.00059 22.9 -0.1 10 22-31 108-117 (118)
5 d1su3a1 a.20.1.2 (A:32-98) Fib 21.2 9.3 0.00068 21.0 -0.0 12 23-34 4-15 (67)
6 d1p42a2 d.14.1.7 (A:128-280) U 18.6 25 0.0018 21.7 1.7 35 15-56 81-115 (147)
7 d1slma1 a.20.1.2 (A:16-80) Str 16.7 18 0.0013 19.6 0.6 12 23-34 3-14 (65)
8 d1ixma_ d.123.1.1 (A:) Sporula 14.1 99 0.0072 16.6 3.6 26 41-66 2-28 (179)
9 d2bgxa1 a.20.1.1 (A:180-260) P 11.6 56 0.0041 18.2 1.8 30 24-59 26-56 (81)
10 d2ivxa1 a.74.1.1 (A:7-149) Cyc 11.2 1.1E+02 0.0078 17.3 3.1 33 41-73 27-60 (143)
No 1
>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2 {Pyrococcus furiosus [TaxId: 2261]}
Probab=28.14 E-value=5.6 Score=23.15 Aligned_cols=10 Identities=40% Similarity=1.102 Sum_probs=8.7
Q ss_pred ccccccccCC
Q 034991 22 EDRFLAPRGW 31 (77)
Q Consensus 22 E~RFL~k~Gw 31 (77)
|++||.|+||
T Consensus 96 ~~k~l~~~~~ 105 (106)
T d2av5a1 96 KRKFLSQFGW 105 (106)
T ss_dssp HHHTTTTTTC
T ss_pred HHHHHHHhcC
Confidence 4789999998
No 2
>d1t98a1 a.4.5.65 (A:8-118) Chromosome partition protein MukF (KicB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.80 E-value=15 Score=22.57 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.2
Q ss_pred HHHHHHHHhhcccccccccC
Q 034991 11 LLLANALAIINEDRFLAPRG 30 (77)
Q Consensus 11 lL~~NAiaILnE~RFL~k~G 30 (77)
|-++=|||++|.|||....+
T Consensus 22 LaFLlaIa~~n~er~d~e~~ 41 (111)
T d1t98a1 22 LSFLLAVATLNGERLDGEMS 41 (111)
T ss_dssp HHHHHHHHHHHHSCCSSCBC
T ss_pred HHHHHHHHHHhhhhhhcccc
Confidence 34566999999999998866
No 3
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.58 E-value=10 Score=21.09 Aligned_cols=13 Identities=15% Similarity=0.393 Sum_probs=8.6
Q ss_pred cccccccCCCCcc
Q 034991 23 DRFLAPRGWSFSE 35 (77)
Q Consensus 23 ~RFL~k~Gw~~~~ 35 (77)
+.+|.++||-...
T Consensus 18 ~~yL~~fGYl~~~ 30 (77)
T d1l6ja1 18 EEYLYRYGYTRVA 30 (77)
T ss_dssp HHHHHHTTCC---
T ss_pred HHHHHHcCCCCCC
Confidence 4799999996543
No 4
>d2czvc1 d.58.59.1 (C:3-120) RNase P protein component 2, Rnp2 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.27 E-value=8.2 Score=22.87 Aligned_cols=10 Identities=50% Similarity=1.178 Sum_probs=8.5
Q ss_pred ccccccccCC
Q 034991 22 EDRFLAPRGW 31 (77)
Q Consensus 22 E~RFL~k~Gw 31 (77)
+++||.++||
T Consensus 108 ~~k~i~~~~~ 117 (118)
T d2czvc1 108 KRKFLAKYGW 117 (118)
T ss_dssp HHHHTGGGTC
T ss_pred HHHHHHHhcC
Confidence 4689999998
No 5
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.15 E-value=9.3 Score=20.95 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=8.9
Q ss_pred cccccccCCCCc
Q 034991 23 DRFLAPRGWSFS 34 (77)
Q Consensus 23 ~RFL~k~Gw~~~ 34 (77)
+.+|.|+|+-..
T Consensus 4 ~~YL~~fgyl~~ 15 (67)
T d1su3a1 4 QKYLEKYYNLKN 15 (67)
T ss_dssp HHHHHHHSCCC-
T ss_pred HHHHHHhCCCCC
Confidence 478999998654
No 6
>d1p42a2 d.14.1.7 (A:128-280) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC {Aquifex aeolicus [TaxId: 63363]}
Probab=18.59 E-value=25 Score=21.71 Aligned_cols=35 Identities=20% Similarity=0.486 Sum_probs=21.1
Q ss_pred HHHHhhcccccccccCCCCcccccCCCchHHHHHHHHHHHHH
Q 034991 15 NALAIINEDRFLAPRGWSFSEFSVGRTKSLKGQIIGLIYATQ 56 (77)
Q Consensus 15 NAiaILnE~RFL~k~Gw~~~~~~~~~~~s~K~qii~LI~avr 56 (77)
||+.| .++.-+.+-|+-. ++.-+|.|+.++|--..
T Consensus 81 naiVi-~~~~~~n~~~LR~------~~E~vRHKiLD~iGDl~ 115 (147)
T d1p42a2 81 NTLVL-GKDKVYNPEGLRY------ENEPVRHKVFDLIGDLY 115 (147)
T ss_dssp TCEEE-CSSCBCSTTCCSS------TTHHHHHHHHHHHHHHG
T ss_pred cceee-cccceeccccccc------ccccchhhhhhhcccHh
Confidence 44433 5555555444433 24689999999987554
No 7
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=16.73 E-value=18 Score=19.56 Aligned_cols=12 Identities=8% Similarity=-0.122 Sum_probs=9.0
Q ss_pred cccccccCCCCc
Q 034991 23 DRFLAPRGWSFS 34 (77)
Q Consensus 23 ~RFL~k~Gw~~~ 34 (77)
+.+|.++|+-..
T Consensus 3 ~~YL~~fgyl~~ 14 (65)
T d1slma1 3 QKYLENYYDLKK 14 (65)
T ss_dssp HHHHHHHSCCCC
T ss_pred HHHHHHcCCCCC
Confidence 468999998544
No 8
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=14.11 E-value=99 Score=16.63 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=20.4
Q ss_pred CchHHHHHHHHHHHHH-hhhHHHHHHH
Q 034991 41 TKSLKGQIIGLIYATQ-YMRVPLILLN 66 (77)
Q Consensus 41 ~~s~K~qii~LI~avr-~mRiPLI~iN 66 (77)
+.++..+.+.+++++| -+|=||=++.
T Consensus 2 ~~a~~~e~~~~l~~~~Hdl~npL~~I~ 28 (179)
T d1ixma_ 2 DTALTNELIHLLGHSRHDWMNKLQLIK 28 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhHhhcCHHHHHH
Confidence 4577788889999999 8998885543
No 9
>d2bgxa1 a.20.1.1 (A:180-260) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.60 E-value=56 Score=18.24 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=18.4
Q ss_pred ccccccCCCCcccccCCCchHHHHHHHHHHHHH-hhh
Q 034991 24 RFLAPRGWSFSEFSVGRTKSLKGQIIGLIYATQ-YMR 59 (77)
Q Consensus 24 RFL~k~Gw~~~~~~~~~~~s~K~qii~LI~avr-~mR 59 (77)
.-|+++|++.+.. . ...+.-.+|.|.| -.|
T Consensus 26 ~~L~k~GY~i~~~--~----~~~~~k~vi~AFQrhFR 56 (81)
T d2bgxa1 26 ELLARYGYDVKPD--M----TPREQRRVIMAFQMHFR 56 (81)
T ss_dssp HHHHHHTCCCCTT--C----CHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCC--C----CcHHHHHHHHHHHHHcc
Confidence 4588899976421 1 1233456788888 666
No 10
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.15 E-value=1.1e+02 Score=17.26 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=27.8
Q ss_pred CchHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHh
Q 034991 41 TKSLKGQIIGLIYATQ-YMRVPLILLNAICIVVK 73 (77)
Q Consensus 41 ~~s~K~qii~LI~avr-~mRiPLI~iN~i~Iv~~ 73 (77)
+.+.|.+..++|..+. .++.|--.+-+.+.++.
T Consensus 27 E~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~~ 60 (143)
T d2ivxa1 27 ELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMH 60 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3578999999999999 99999988887777664
Done!