Query 034995
Match_columns 76
No_of_seqs 109 out of 1265
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05022 S-100A13 S-100A13: S-1 99.7 1.2E-16 2.7E-21 80.6 6.4 66 1-66 10-78 (89)
2 PF13499 EF-hand_7: EF-hand do 99.7 3.3E-16 7.2E-21 74.9 6.0 61 1-61 2-66 (66)
3 cd05027 S-100B S-100B: S-100B 99.7 9.5E-16 2.1E-20 77.3 7.3 65 1-65 10-81 (88)
4 KOG0027 Calmodulin and related 99.7 9.2E-16 2E-20 83.9 7.4 76 1-76 10-91 (151)
5 COG5126 FRQ1 Ca2+-binding prot 99.6 2.2E-15 4.7E-20 82.8 7.5 75 1-76 22-98 (160)
6 KOG0027 Calmodulin and related 99.6 2.2E-15 4.8E-20 82.4 6.7 63 1-63 87-149 (151)
7 COG5126 FRQ1 Ca2+-binding prot 99.6 3.3E-15 7.2E-20 82.0 6.7 64 1-64 94-157 (160)
8 cd00052 EH Eps15 homology doma 99.6 3.9E-14 8.4E-19 67.6 7.6 62 1-64 1-62 (67)
9 cd05031 S-100A10_like S-100A10 99.6 2.2E-14 4.8E-19 73.0 7.0 65 1-65 10-81 (94)
10 cd05025 S-100A1 S-100A1: S-100 99.6 3.6E-14 7.9E-19 71.9 7.4 66 1-66 11-83 (92)
11 cd05029 S-100A6 S-100A6: S-100 99.6 2.9E-14 6.2E-19 71.9 6.6 65 2-66 13-82 (88)
12 cd05026 S-100Z S-100Z: S-100Z 99.6 5.3E-14 1.2E-18 71.6 7.4 65 2-66 13-84 (93)
13 PF14658 EF-hand_9: EF-hand do 99.5 9.8E-14 2.1E-18 66.0 6.6 62 3-64 2-65 (66)
14 smart00027 EH Eps15 homology d 99.5 1.9E-13 4E-18 69.8 7.1 62 1-64 12-73 (96)
15 cd00213 S-100 S-100: S-100 dom 99.5 1.9E-13 4.1E-18 68.7 6.7 65 1-65 10-81 (88)
16 KOG0028 Ca2+-binding protein ( 99.5 2.8E-13 6.1E-18 74.0 7.0 76 1-76 35-112 (172)
17 PF13833 EF-hand_8: EF-hand do 99.5 3.8E-13 8.3E-18 62.0 6.5 52 12-63 1-53 (54)
18 cd00051 EFh EF-hand, calcium b 99.5 1E-12 2.2E-17 61.0 7.2 61 1-61 2-62 (63)
19 cd05023 S-100A11 S-100A11: S-1 99.4 2.1E-12 4.6E-17 65.2 7.2 65 1-65 11-82 (89)
20 KOG0037 Ca2+-binding protein, 99.4 2.4E-12 5.1E-17 73.3 7.0 65 1-65 126-190 (221)
21 KOG0028 Ca2+-binding protein ( 99.4 2.5E-12 5.3E-17 70.3 6.5 63 1-63 108-170 (172)
22 PTZ00183 centrin; Provisional 99.4 5.9E-12 1.3E-16 68.6 8.0 64 1-64 19-82 (158)
23 PTZ00183 centrin; Provisional 99.4 5E-12 1.1E-16 68.9 7.2 62 2-63 93-154 (158)
24 KOG0031 Myosin regulatory ligh 99.4 5.6E-12 1.2E-16 68.6 7.0 71 1-75 34-106 (171)
25 PTZ00184 calmodulin; Provision 99.3 7.3E-12 1.6E-16 67.4 6.9 61 2-62 87-147 (149)
26 cd00252 SPARC_EC SPARC_EC; ext 99.3 1.3E-11 2.9E-16 65.0 6.6 56 2-61 51-106 (116)
27 PTZ00184 calmodulin; Provision 99.3 2.1E-11 4.6E-16 65.6 7.3 64 2-65 14-77 (149)
28 cd05030 calgranulins Calgranul 99.3 1.8E-11 3.8E-16 61.7 6.2 65 2-66 11-82 (88)
29 KOG0041 Predicted Ca2+-binding 99.2 4.3E-11 9.2E-16 67.8 6.2 66 2-67 102-167 (244)
30 KOG0030 Myosin essential light 99.2 3.4E-11 7.4E-16 64.6 5.4 66 1-66 13-80 (152)
31 KOG0034 Ca2+/calmodulin-depend 99.2 7E-11 1.5E-15 66.7 6.8 64 2-65 107-177 (187)
32 KOG0031 Myosin regulatory ligh 99.1 3.7E-10 8.1E-15 61.6 6.7 63 1-63 103-165 (171)
33 KOG0030 Myosin essential light 99.1 2.5E-10 5.5E-15 61.3 5.6 59 3-62 92-150 (152)
34 cd05024 S-100A10 S-100A10: A s 99.1 2.1E-09 4.5E-14 54.3 7.4 64 2-66 11-79 (91)
35 PLN02964 phosphatidylserine de 99.1 1.2E-09 2.7E-14 70.8 7.5 57 3-63 147-207 (644)
36 PLN02964 phosphatidylserine de 99.0 2E-09 4.3E-14 69.9 7.3 63 2-64 182-244 (644)
37 KOG0044 Ca2+ sensor (EF-Hand s 99.0 2.1E-09 4.5E-14 61.0 5.7 63 2-64 67-129 (193)
38 KOG0036 Predicted mitochondria 98.9 9.7E-09 2.1E-13 63.5 6.1 66 2-67 85-150 (463)
39 PF00036 EF-hand_1: EF hand; 98.9 2.5E-09 5.5E-14 43.4 2.4 26 2-27 3-28 (29)
40 PF00036 EF-hand_1: EF hand; 98.8 7.8E-09 1.7E-13 42.0 3.4 28 36-63 1-28 (29)
41 KOG0044 Ca2+ sensor (EF-Hand s 98.8 1.6E-08 3.4E-13 57.4 5.2 61 4-64 105-176 (193)
42 PF14788 EF-hand_10: EF hand; 98.8 5.5E-08 1.2E-12 44.1 5.6 49 15-63 1-49 (51)
43 PF13405 EF-hand_6: EF-hand do 98.7 1.1E-08 2.3E-13 42.1 2.5 29 1-29 2-31 (31)
44 KOG0036 Predicted mitochondria 98.7 9.1E-08 2E-12 59.3 7.0 64 1-64 16-80 (463)
45 PF12763 EF-hand_4: Cytoskelet 98.7 1.4E-07 3.1E-12 48.9 5.9 60 2-64 13-72 (104)
46 KOG0377 Protein serine/threoni 98.7 1.5E-07 3.3E-12 59.1 6.6 63 2-64 550-616 (631)
47 KOG0040 Ca2+-binding actin-bun 98.6 1.1E-07 2.4E-12 66.3 6.3 75 2-76 2256-2340(2399)
48 PRK12309 transaldolase/EF-hand 98.6 2E-07 4.2E-12 58.0 5.7 50 2-64 337-386 (391)
49 KOG0037 Ca2+-binding protein, 98.5 6.1E-07 1.3E-11 51.6 6.5 62 2-63 60-122 (221)
50 KOG0038 Ca2+-binding kinase in 98.5 5.4E-07 1.2E-11 49.3 5.3 63 3-65 112-179 (189)
51 PF13202 EF-hand_5: EF hand; P 98.5 1.4E-07 2.9E-12 37.0 2.1 23 2-24 2-24 (25)
52 KOG4223 Reticulocalbin, calume 98.3 1.2E-06 2.6E-11 52.9 4.7 65 2-66 166-231 (325)
53 PF10591 SPARC_Ca_bdg: Secrete 98.3 1.3E-07 2.9E-12 49.7 0.6 55 4-60 59-113 (113)
54 KOG0034 Ca2+/calmodulin-depend 98.3 6.2E-06 1.3E-10 46.8 7.3 65 2-66 69-135 (187)
55 PF13202 EF-hand_5: EF hand; P 98.2 2.1E-06 4.5E-11 33.6 2.9 25 37-61 1-25 (25)
56 KOG4251 Calcium binding protei 98.2 9.8E-07 2.1E-11 52.0 2.7 70 2-71 104-176 (362)
57 KOG4223 Reticulocalbin, calume 98.2 2.2E-06 4.8E-11 51.8 4.0 62 3-64 245-306 (325)
58 KOG0046 Ca2+-binding actin-bun 98.2 6.6E-06 1.4E-10 52.7 6.2 63 2-65 22-87 (627)
59 PF13405 EF-hand_6: EF-hand do 98.1 6.5E-06 1.4E-10 33.5 3.1 28 36-63 1-28 (31)
60 PF09279 EF-hand_like: Phospho 97.8 4.3E-05 9.3E-10 37.8 3.7 65 1-66 2-72 (83)
61 smart00054 EFh EF-hand, calciu 97.8 3.6E-05 7.8E-10 29.6 2.8 25 2-26 3-27 (29)
62 KOG4065 Uncharacterized conser 97.7 0.00027 5.8E-09 37.4 5.9 57 3-59 71-141 (144)
63 smart00054 EFh EF-hand, calciu 97.7 9.9E-05 2.2E-09 28.3 3.1 27 37-63 2-28 (29)
64 KOG0377 Protein serine/threoni 97.4 0.00093 2E-08 42.7 5.9 63 2-64 467-576 (631)
65 PF13833 EF-hand_8: EF-hand do 97.3 0.00027 5.8E-09 32.0 2.3 26 2-27 28-53 (54)
66 PF13499 EF-hand_7: EF-hand do 97.2 0.00032 6.8E-09 33.0 2.2 24 2-25 43-66 (66)
67 KOG2643 Ca2+ binding protein, 97.0 0.00042 9E-09 43.9 1.4 54 12-65 401-455 (489)
68 KOG2243 Ca2+ release channel ( 96.9 0.0025 5.4E-08 46.1 4.9 61 3-64 4061-4121(5019)
69 KOG4578 Uncharacterized conser 96.9 0.00095 2.1E-08 41.1 2.5 63 4-66 338-401 (421)
70 KOG0038 Ca2+-binding kinase in 96.8 0.0038 8.2E-08 34.5 4.1 64 3-66 75-139 (189)
71 PF05042 Caleosin: Caleosin re 96.8 0.0095 2.1E-07 33.6 5.7 64 3-66 11-127 (174)
72 KOG0042 Glycerol-3-phosphate d 96.8 0.0052 1.1E-07 40.4 5.3 70 2-71 596-665 (680)
73 KOG1029 Endocytic adaptor prot 96.7 0.0034 7.4E-08 42.6 4.1 60 2-63 198-257 (1118)
74 KOG0169 Phosphoinositide-speci 96.6 0.0055 1.2E-07 41.2 4.7 65 2-66 139-203 (746)
75 KOG3555 Ca2+-binding proteogly 96.6 0.0052 1.1E-07 38.2 4.3 58 4-65 255-312 (434)
76 PF14788 EF-hand_10: EF hand; 96.5 0.0047 1E-07 28.0 2.9 27 2-28 24-50 (51)
77 KOG2562 Protein phosphatase 2 96.4 0.011 2.5E-07 37.9 5.1 59 4-65 283-345 (493)
78 PF05517 p25-alpha: p25-alpha 96.4 0.026 5.6E-07 31.2 6.0 63 2-64 2-70 (154)
79 cd05026 S-100Z S-100Z: S-100Z 96.3 0.0054 1.2E-07 31.0 2.7 27 2-28 56-82 (93)
80 cd00051 EFh EF-hand, calcium b 96.3 0.014 3.1E-07 25.9 3.9 28 37-64 2-29 (63)
81 cd05022 S-100A13 S-100A13: S-1 96.1 0.0077 1.7E-07 30.4 2.7 27 2-28 50-76 (89)
82 KOG4251 Calcium binding protei 96.1 0.017 3.8E-07 34.6 4.4 55 6-60 288-342 (362)
83 smart00027 EH Eps15 homology d 96.1 0.025 5.4E-07 28.6 4.5 29 36-64 11-39 (96)
84 cd05031 S-100A10_like S-100A10 96.0 0.003 6.5E-08 31.9 1.0 29 2-30 54-82 (94)
85 cd05023 S-100A11 S-100A11: S-1 96.0 0.0093 2E-07 30.0 2.6 27 2-28 55-81 (89)
86 KOG0035 Ca2+-binding actin-bun 96.0 0.035 7.5E-07 38.3 5.8 71 1-71 749-824 (890)
87 KOG1955 Ral-GTPase effector RA 95.9 0.025 5.3E-07 37.0 4.8 60 3-64 235-294 (737)
88 cd00252 SPARC_EC SPARC_EC; ext 95.8 0.011 2.3E-07 31.4 2.5 24 2-25 83-106 (116)
89 cd00052 EH Eps15 homology doma 95.7 0.037 8E-07 25.6 3.9 27 38-64 2-28 (67)
90 cd05027 S-100B S-100B: S-100B 95.6 0.047 1E-06 27.4 4.3 28 36-63 9-38 (88)
91 cd05030 calgranulins Calgranul 95.5 0.018 3.9E-07 28.8 2.6 27 2-28 54-80 (88)
92 cd05025 S-100A1 S-100A1: S-100 95.5 0.019 4.1E-07 28.8 2.6 27 2-28 55-81 (92)
93 cd05029 S-100A6 S-100A6: S-100 95.5 0.02 4.3E-07 28.8 2.7 27 2-28 54-80 (88)
94 KOG4666 Predicted phosphate ac 95.4 0.021 4.6E-07 35.4 3.0 59 3-61 263-322 (412)
95 cd00213 S-100 S-100: S-100 dom 95.4 0.043 9.3E-07 27.1 3.6 29 35-63 8-38 (88)
96 KOG1707 Predicted Ras related/ 95.3 0.02 4.3E-07 37.9 2.8 57 2-64 318-378 (625)
97 KOG4666 Predicted phosphate ac 95.1 0.13 2.7E-06 32.1 5.6 65 1-66 298-362 (412)
98 cd05024 S-100A10 S-100A10: A s 94.9 0.039 8.5E-07 28.0 2.6 27 2-28 51-77 (91)
99 KOG0751 Mitochondrial aspartat 94.8 0.12 2.6E-06 34.0 5.2 61 2-65 111-177 (694)
100 KOG2643 Ca2+ binding protein, 94.7 0.2 4.3E-06 32.3 5.9 54 8-65 295-348 (489)
101 KOG3866 DNA-binding protein of 94.7 0.096 2.1E-06 32.5 4.3 62 3-64 248-325 (442)
102 PF12763 EF-hand_4: Cytoskelet 94.2 0.051 1.1E-06 28.2 2.2 26 2-27 46-71 (104)
103 PF08976 DUF1880: Domain of un 94.0 0.054 1.2E-06 28.7 2.1 33 31-63 3-35 (118)
104 PRK12309 transaldolase/EF-hand 93.8 0.2 4.3E-06 31.8 4.7 30 29-58 328-357 (391)
105 KOG2562 Protein phosphatase 2 93.6 0.13 2.9E-06 33.2 3.6 54 10-63 326-379 (493)
106 KOG4347 GTPase-activating prot 93.1 0.12 2.7E-06 34.6 3.0 54 2-56 558-611 (671)
107 PF14658 EF-hand_9: EF-hand do 92.9 0.16 3.5E-06 24.3 2.5 26 2-27 38-64 (66)
108 KOG0751 Mitochondrial aspartat 92.6 0.55 1.2E-05 31.1 5.3 53 9-63 84-136 (694)
109 PF05042 Caleosin: Caleosin re 92.3 0.98 2.1E-05 25.7 5.4 59 2-61 99-164 (174)
110 KOG2871 Uncharacterized conser 91.7 0.11 2.5E-06 32.8 1.5 58 1-58 311-369 (449)
111 PLN02952 phosphoinositide phos 91.4 1.7 3.7E-05 29.3 6.6 55 12-67 13-69 (599)
112 PF09069 EF-hand_3: EF-hand; 91.2 1.1 2.5E-05 22.7 5.8 60 2-64 6-76 (90)
113 PF07308 DUF1456: Protein of u 90.7 1.1 2.4E-05 21.5 5.4 46 16-61 14-59 (68)
114 PLN02222 phosphoinositide phos 90.4 1.8 3.8E-05 29.2 6.0 61 2-64 28-91 (581)
115 PLN02230 phosphoinositide phos 90.1 2.5 5.3E-05 28.6 6.5 61 2-63 32-102 (598)
116 PLN02228 Phosphoinositide phos 89.0 3.4 7.4E-05 27.8 6.5 61 2-64 27-93 (567)
117 KOG0998 Synaptic vesicle prote 88.9 0.14 3.1E-06 35.4 0.3 61 3-65 287-347 (847)
118 KOG1029 Endocytic adaptor prot 88.8 3.1 6.8E-05 29.3 6.3 58 5-64 19-78 (1118)
119 KOG0041 Predicted Ca2+-binding 88.6 1 2.2E-05 26.5 3.5 28 37-64 101-128 (244)
120 PF09279 EF-hand_like: Phospho 88.5 1.4 3.1E-05 21.4 3.7 31 36-67 1-31 (83)
121 PF12174 RST: RCD1-SRO-TAF4 (R 88.0 0.82 1.8E-05 22.1 2.5 51 13-66 6-56 (70)
122 PF03672 UPF0154: Uncharacteri 87.6 2 4.4E-05 20.4 3.9 32 13-44 29-60 (64)
123 PF14513 DAG_kinase_N: Diacylg 87.3 0.83 1.8E-05 25.0 2.6 54 12-67 4-64 (138)
124 KOG3449 60S acidic ribosomal p 86.7 3.2 7E-05 21.9 5.0 43 3-45 5-47 (112)
125 PF08461 HTH_12: Ribonuclease 86.5 1.4 3.1E-05 20.9 2.9 37 12-48 10-46 (66)
126 KOG1265 Phospholipase C [Lipid 86.4 4.6 9.9E-05 28.9 6.1 63 2-64 224-300 (1189)
127 cd07313 terB_like_2 tellurium 85.9 2.7 5.8E-05 21.3 4.0 54 12-65 12-67 (104)
128 PRK00523 hypothetical protein; 85.9 2.8 6.1E-05 20.4 3.9 32 13-44 37-68 (72)
129 TIGR01848 PHA_reg_PhaR polyhyd 85.5 3.8 8.2E-05 21.5 5.1 59 6-65 10-78 (107)
130 PLN02223 phosphoinositide phos 85.2 5.6 0.00012 26.7 5.9 62 2-64 19-93 (537)
131 PLN02952 phosphoinositide phos 85.2 8.2 0.00018 26.3 6.7 61 2-63 41-110 (599)
132 PF08414 NADPH_Ox: Respiratory 84.9 3.3 7.2E-05 21.5 3.9 59 3-66 34-95 (100)
133 PF07879 PHB_acc_N: PHB/PHA ac 84.7 2.8 6.1E-05 19.9 3.3 38 6-43 10-57 (64)
134 PF08726 EFhand_Ca_insen: Ca2+ 83.6 0.89 1.9E-05 21.9 1.4 50 2-59 9-65 (69)
135 KOG3077 Uncharacterized conser 82.9 8.4 0.00018 23.5 6.1 67 8-74 74-140 (260)
136 COG4103 Uncharacterized protei 82.9 3.3 7.1E-05 22.9 3.6 56 12-67 41-98 (148)
137 PRK01844 hypothetical protein; 81.6 4.7 0.0001 19.7 3.8 32 13-44 36-67 (72)
138 KOG4004 Matricellular protein 81.3 0.35 7.6E-06 28.3 -0.5 59 5-65 193-252 (259)
139 PF11116 DUF2624: Protein of u 80.8 5.6 0.00012 20.0 6.5 53 12-64 11-63 (85)
140 PF00404 Dockerin_1: Dockerin 80.8 2.3 5E-05 15.6 2.3 14 9-22 1-14 (21)
141 PF01023 S_100: S-100/ICaBP ty 80.6 2.7 5.8E-05 18.3 2.3 25 3-27 10-36 (44)
142 KOG0040 Ca2+-binding actin-bun 79.4 7.2 0.00016 29.8 5.1 55 2-57 2299-2355(2399)
143 TIGR01639 P_fal_TIGR01639 Plas 78.8 5.3 0.00012 18.6 3.8 32 13-44 7-38 (61)
144 COG3763 Uncharacterized protei 75.0 8.1 0.00018 18.8 4.0 32 13-44 36-67 (71)
145 KOG2301 Voltage-gated Ca2+ cha 74.4 1.6 3.4E-05 32.7 0.9 63 2-65 1420-1486(1592)
146 KOG0506 Glutaminase (contains 74.1 16 0.00035 24.5 5.2 60 4-63 91-158 (622)
147 PF01885 PTS_2-RNA: RNA 2'-pho 73.0 11 0.00024 21.6 4.0 36 9-44 26-61 (186)
148 PF13623 SurA_N_2: SurA N-term 71.9 13 0.00028 20.5 4.0 19 23-41 97-115 (145)
149 PTZ00373 60S Acidic ribosomal 71.9 13 0.00028 19.7 5.2 42 4-45 8-49 (112)
150 TIGR02675 tape_meas_nterm tape 71.5 6.8 0.00015 19.0 2.6 16 12-27 27-42 (75)
151 PF09068 EF-hand_2: EF hand; 71.5 5.9 0.00013 21.3 2.5 23 5-27 103-125 (127)
152 COG2818 Tag 3-methyladenine DN 71.2 3.2 7E-05 23.9 1.5 41 1-41 57-97 (188)
153 TIGR03573 WbuX N-acetyl sugar 71.0 23 0.0005 22.2 5.4 12 32-43 303-314 (343)
154 KOG3555 Ca2+-binding proteogly 71.0 5.1 0.00011 25.6 2.4 64 2-65 214-280 (434)
155 PF02885 Glycos_trans_3N: Glyc 70.7 9.7 0.00021 17.8 4.1 35 29-63 12-46 (66)
156 KOG0169 Phosphoinositide-speci 69.9 28 0.00061 24.5 5.8 60 2-65 175-234 (746)
157 PF09373 PMBR: Pseudomurein-bi 69.6 6.8 0.00015 15.8 2.0 17 49-65 2-18 (33)
158 KOG4301 Beta-dystrobrevin [Cyt 69.5 8.2 0.00018 24.6 3.1 61 5-66 116-176 (434)
159 KOG4347 GTPase-activating prot 69.4 13 0.00029 25.6 4.2 34 34-67 554-587 (671)
160 KOG1955 Ral-GTPase effector RA 68.7 5.2 0.00011 26.8 2.2 28 1-28 267-294 (737)
161 KOG1954 Endocytosis/signaling 68.1 13 0.00028 24.3 3.8 45 13-59 457-501 (532)
162 KOG0998 Synaptic vesicle prote 67.3 3.8 8.2E-05 28.9 1.5 62 2-65 14-75 (847)
163 PRK00819 RNA 2'-phosphotransfe 67.2 21 0.00047 20.4 4.4 35 9-43 27-61 (179)
164 PF09336 Vps4_C: Vps4 C termin 66.8 12 0.00027 17.5 3.1 26 15-40 29-54 (62)
165 PF02037 SAP: SAP domain; Int 65.2 9.4 0.0002 15.6 2.2 19 15-33 3-21 (35)
166 cd08819 CARD_MDA5_2 Caspase ac 63.8 18 0.00039 18.4 5.8 49 13-64 31-79 (88)
167 KOG1707 Predicted Ras related/ 63.7 16 0.00036 24.9 3.8 64 1-64 197-266 (625)
168 smart00513 SAP Putative DNA-bi 63.1 10 0.00022 15.3 2.6 19 15-33 3-21 (35)
169 COG1460 Uncharacterized protei 62.4 22 0.00049 18.9 3.5 25 18-42 82-106 (114)
170 PF10982 DUF2789: Protein of u 60.6 18 0.00039 17.8 2.8 35 19-53 6-40 (74)
171 PF13829 DUF4191: Domain of un 59.8 36 0.00077 20.4 4.4 35 10-44 162-196 (224)
172 PF03979 Sigma70_r1_1: Sigma-7 58.9 17 0.00038 17.8 2.7 32 12-45 18-49 (82)
173 cd05833 Ribosomal_P2 Ribosomal 58.5 26 0.00056 18.4 5.2 55 4-63 6-60 (109)
174 PF05099 TerB: Tellurite resis 57.2 4.8 0.0001 21.4 0.5 51 12-62 36-88 (140)
175 PF11020 DUF2610: Domain of un 56.4 25 0.00054 17.6 4.7 52 13-64 26-78 (82)
176 KOG3866 DNA-binding protein of 56.2 16 0.00035 23.1 2.7 48 17-64 225-273 (442)
177 PF14294 DUF4372: Domain of un 55.3 25 0.00054 17.2 4.1 44 31-74 13-60 (76)
178 TIGR00135 gatC glutamyl-tRNA(G 54.7 27 0.00058 17.4 4.0 29 16-44 1-29 (93)
179 KOG0039 Ferric reductase, NADH 54.3 28 0.00061 24.0 3.8 62 2-64 21-90 (646)
180 TIGR02613 mob_myst_B mobile my 53.9 32 0.0007 19.6 3.5 22 10-31 126-147 (186)
181 KOG4578 Uncharacterized conser 53.6 9.9 0.00021 24.2 1.5 26 2-27 373-398 (421)
182 PF12995 DUF3879: Domain of un 53.6 41 0.0009 19.3 6.0 50 16-65 2-53 (186)
183 TIGR00624 tag DNA-3-methyladen 52.6 12 0.00025 21.6 1.6 58 1-61 55-116 (179)
184 cd08330 CARD_ASC_NALP1 Caspase 52.1 29 0.00063 17.1 4.3 47 12-63 26-72 (82)
185 PF07128 DUF1380: Protein of u 52.0 40 0.00087 18.6 3.6 31 16-46 27-57 (139)
186 cd07357 HN_L-whirlin_R2_like S 50.7 30 0.00065 17.3 2.7 37 32-68 16-52 (81)
187 PF06207 DUF1002: Protein of u 49.9 52 0.0011 19.6 4.0 46 17-62 173-222 (225)
188 PF06384 ICAT: Beta-catenin-in 49.8 33 0.0007 17.1 2.7 20 19-38 20-39 (78)
189 PF11829 DUF3349: Protein of u 49.4 37 0.00081 17.5 3.4 51 16-66 20-70 (96)
190 COG5069 SAC6 Ca2+-binding acti 47.7 28 0.00062 23.4 2.9 62 3-65 489-550 (612)
191 PF07499 RuvA_C: RuvA, C-termi 47.4 26 0.00057 15.2 4.1 39 18-60 3-41 (47)
192 PRK09462 fur ferric uptake reg 47.0 47 0.001 18.0 4.9 31 12-42 30-60 (148)
193 PRK00441 argR arginine repress 46.9 50 0.0011 18.3 4.1 40 12-51 15-58 (149)
194 PRK10353 3-methyl-adenine DNA 46.9 11 0.00025 21.7 1.0 42 1-42 56-97 (187)
195 PLN00138 large subunit ribosom 46.8 45 0.00097 17.7 5.1 41 5-45 7-47 (113)
196 PRK00034 gatC aspartyl/glutamy 46.6 38 0.00083 16.9 4.1 30 15-44 2-31 (95)
197 PF08355 EF_assoc_1: EF hand a 46.6 25 0.00054 17.2 2.1 18 46-63 13-30 (76)
198 PF08002 DUF1697: Protein of u 45.9 19 0.00042 19.5 1.8 60 6-65 9-90 (137)
199 PHA02105 hypothetical protein 45.8 34 0.00074 16.0 3.2 49 15-63 4-57 (68)
200 PRK09389 (R)-citramalate synth 45.8 72 0.0016 21.3 4.5 47 19-65 321-369 (488)
201 KOG4070 Putative signal transd 45.3 38 0.00083 19.2 2.8 61 3-63 16-85 (180)
202 PF12767 SAGA-Tad1: Transcript 45.0 67 0.0015 19.2 4.8 54 12-69 5-59 (252)
203 PRK14981 DNA-directed RNA poly 44.4 48 0.001 17.4 3.9 14 31-44 78-91 (112)
204 cd07176 terB tellurite resista 44.2 18 0.00039 18.2 1.4 17 12-28 15-31 (111)
205 PF03352 Adenine_glyco: Methyl 44.1 9.9 0.00021 21.8 0.5 40 2-41 52-91 (179)
206 TIGR01529 argR_whole arginine 43.8 56 0.0012 18.0 4.1 35 11-45 12-46 (146)
207 cd00086 homeodomain Homeodomai 43.2 32 0.00069 15.0 4.1 25 15-41 24-48 (59)
208 PF10437 Lip_prot_lig_C: Bacte 43.0 42 0.00092 16.3 4.2 43 17-61 43-86 (86)
209 PRK09430 djlA Dna-J like membr 42.6 78 0.0017 19.3 5.8 54 11-65 67-122 (267)
210 PF09312 SurA_N: SurA N-termin 42.6 36 0.00077 17.8 2.4 35 27-63 62-96 (118)
211 PF12631 GTPase_Cys_C: Catalyt 42.0 30 0.00066 16.5 2.0 13 29-41 57-69 (73)
212 PRK08181 transposase; Validate 41.8 81 0.0018 19.2 5.0 51 12-65 3-53 (269)
213 KOG4286 Dystrophin-like protei 41.6 20 0.00043 25.4 1.6 49 4-52 475-523 (966)
214 PF06226 DUF1007: Protein of u 41.3 34 0.00074 19.9 2.4 23 5-27 56-78 (212)
215 PF07862 Nif11: Nitrogen fixat 41.1 35 0.00075 14.8 2.9 20 17-36 28-47 (49)
216 COG5562 Phage envelope protein 40.8 27 0.00059 19.2 1.8 21 44-64 81-101 (137)
217 PRK07394 hypothetical protein; 40.5 95 0.0021 19.7 5.0 14 31-44 21-34 (342)
218 PF13624 SurA_N_3: SurA N-term 40.1 52 0.0011 17.6 2.9 40 25-64 93-133 (154)
219 PF03963 FlgD: Flagellar hook 40.0 45 0.00097 16.5 2.4 20 47-66 26-45 (81)
220 cd08327 CARD_RAIDD Caspase act 39.3 56 0.0012 16.7 4.9 47 12-63 32-78 (94)
221 cd07316 terB_like_DjlA N-termi 39.0 53 0.0012 16.3 6.0 53 12-64 12-65 (106)
222 PF01316 Arg_repressor: Argini 38.4 50 0.0011 15.9 3.8 32 14-45 18-49 (70)
223 KOG4629 Predicted mechanosensi 38.1 1.5E+02 0.0032 21.1 5.2 35 32-66 430-464 (714)
224 PF05788 Orbi_VP1: Orbivirus R 37.4 44 0.00096 24.8 2.8 36 12-47 1134-1169(1301)
225 cd07894 Adenylation_RNA_ligase 36.9 64 0.0014 20.5 3.2 41 5-45 131-181 (342)
226 PRK03341 arginine repressor; P 36.9 82 0.0018 17.9 3.8 34 12-45 26-59 (168)
227 COG4807 Uncharacterized protei 36.5 52 0.0011 18.2 2.4 27 19-45 102-128 (155)
228 cd04777 HTH_MerR-like_sg1 Heli 36.4 64 0.0014 16.4 4.7 41 24-66 50-91 (107)
229 PF02337 Gag_p10: Retroviral G 36.1 64 0.0014 16.4 3.2 43 18-60 11-58 (90)
230 TIGR03798 ocin_TIGR03798 bacte 35.9 51 0.0011 15.2 3.9 26 15-40 24-49 (64)
231 PF13075 DUF3939: Protein of u 35.5 11 0.00024 20.7 -0.2 48 14-65 8-55 (140)
232 PF09682 Holin_LLH: Phage holi 35.3 70 0.0015 16.6 3.9 24 20-43 76-99 (108)
233 KOG1265 Phospholipase C [Lipid 35.0 1.9E+02 0.0041 21.5 6.2 33 35-67 221-253 (1189)
234 PF10281 Ish1: Putative stress 34.9 41 0.00089 13.8 4.4 14 18-31 6-19 (38)
235 cd06403 PB1_Par6 The PB1 domai 34.3 20 0.00043 17.9 0.6 22 42-63 12-33 (80)
236 cd08332 CARD_CASP2 Caspase act 34.2 67 0.0015 16.1 4.5 46 13-63 32-77 (90)
237 PLN03228 methylthioalkylmalate 34.1 1.4E+02 0.003 20.2 4.5 45 20-64 431-477 (503)
238 PLN02230 phosphoinositide phos 34.1 1.1E+02 0.0024 21.2 4.1 32 33-65 27-58 (598)
239 KOG4064 Cysteine dioxygenase C 33.5 58 0.0013 18.5 2.4 41 15-55 11-53 (196)
240 PF01479 S4: S4 domain; Inter 33.4 47 0.001 14.0 3.2 25 21-45 3-27 (48)
241 PF12875 DUF3826: Protein of u 32.9 28 0.00061 20.2 1.1 43 24-67 86-128 (188)
242 PF02761 Cbl_N2: CBL proto-onc 32.7 74 0.0016 16.1 5.5 50 13-62 20-69 (85)
243 PF12987 DUF3871: Domain of un 32.5 1.3E+02 0.0029 19.0 5.4 57 12-68 214-290 (323)
244 cd08313 Death_TNFR1 Death doma 32.5 70 0.0015 15.8 3.3 24 15-40 8-31 (80)
245 PF09454 Vps23_core: Vps23 cor 32.3 60 0.0013 15.3 2.1 18 48-65 36-53 (65)
246 PF14164 YqzH: YqzH-like prote 32.2 66 0.0014 15.4 2.5 25 2-26 11-36 (64)
247 PF14069 SpoVIF: Stage VI spor 32.1 72 0.0016 15.8 5.2 44 18-62 30-77 (79)
248 KOG2278 RNA:NAD 2'-phosphotran 31.9 77 0.0017 18.5 2.7 37 8-44 27-63 (207)
249 PF04876 Tenui_NCP: Tenuivirus 31.6 1E+02 0.0022 17.5 3.1 19 47-65 95-113 (175)
250 PF08006 DUF1700: Protein of u 31.5 78 0.0017 17.8 2.8 28 17-44 2-29 (181)
251 PF08100 Dimerisation: Dimeris 31.3 41 0.0009 15.1 1.4 23 4-26 11-33 (51)
252 COG0721 GatC Asp-tRNAAsn/Glu-t 31.3 81 0.0018 16.1 3.8 30 15-44 2-31 (96)
253 PF01475 FUR: Ferric uptake re 31.3 83 0.0018 16.2 4.0 30 15-44 23-52 (120)
254 PF10891 DUF2719: Protein of u 31.2 33 0.00072 17.1 1.1 16 48-63 32-47 (81)
255 cd08032 LARP_7 La RNA-binding 31.2 69 0.0015 16.0 2.2 22 40-61 28-49 (82)
256 PRK11858 aksA trans-homoaconit 31.1 1.5E+02 0.0032 19.0 4.9 47 19-65 323-372 (378)
257 cd08029 LA_like_fungal La-moti 30.5 75 0.0016 15.5 3.1 12 11-22 30-41 (76)
258 PF02334 RTP: Replication term 30.4 64 0.0014 17.3 2.1 32 13-44 33-64 (122)
259 COG3077 RelB DNA-damage-induci 30.2 74 0.0016 16.2 2.3 25 19-44 17-41 (88)
260 PF08044 DUF1707: Domain of un 30.1 64 0.0014 14.6 2.7 30 12-41 20-49 (53)
261 PF04433 SWIRM: SWIRM domain; 30.1 65 0.0014 15.7 2.1 23 40-62 42-64 (86)
262 PF07848 PaaX: PaaX-like prote 30.0 74 0.0016 15.2 2.8 39 4-44 9-47 (70)
263 PRK13510 sulfur transfer compl 29.9 51 0.0011 16.7 1.7 18 48-65 73-90 (95)
264 KOG2802 Membrane protein HUEL 29.9 1.6E+02 0.0035 19.5 4.1 31 14-44 439-469 (503)
265 PF03874 RNA_pol_Rpb4: RNA pol 29.6 89 0.0019 16.1 2.9 40 16-61 71-110 (117)
266 cd07153 Fur_like Ferric uptake 29.5 87 0.0019 15.9 4.9 40 4-44 6-45 (116)
267 PF12486 DUF3702: ImpA domain 29.4 1.1E+02 0.0024 17.1 4.3 22 6-27 76-97 (148)
268 PF13331 DUF4093: Domain of un 29.3 85 0.0018 15.8 3.2 10 52-61 77-86 (87)
269 TIGR02736 cbb3_Q_epsi cytochro 28.8 72 0.0016 14.8 1.9 24 40-63 19-42 (56)
270 PF09107 SelB-wing_3: Elongati 28.8 66 0.0014 14.3 2.6 29 13-46 8-36 (50)
271 PF07492 Trehalase_Ca-bi: Neut 28.7 14 0.0003 14.8 -0.4 14 40-53 4-17 (30)
272 KOG0869 CCAAT-binding factor, 28.4 1.2E+02 0.0026 17.3 3.2 25 8-32 79-103 (168)
273 PRK10788 periplasmic folding c 28.1 2E+02 0.0044 19.7 6.1 41 24-64 104-145 (623)
274 KOG2419 Phosphatidylserine dec 28.1 33 0.00072 24.1 1.0 61 3-63 441-533 (975)
275 PF04077 DsrH: DsrH like prote 27.9 55 0.0012 16.3 1.6 16 50-65 70-85 (88)
276 PF06648 DUF1160: Protein of u 27.7 1.1E+02 0.0024 16.5 3.2 31 14-44 49-80 (122)
277 PF10668 Phage_terminase: Phag 27.6 77 0.0017 14.8 2.0 31 3-39 11-41 (60)
278 cd08326 CARD_CASP9 Caspase act 27.6 90 0.0019 15.5 4.5 47 12-63 27-73 (84)
279 PF13344 Hydrolase_6: Haloacid 27.6 37 0.0008 17.2 1.0 23 13-35 39-61 (101)
280 cd08033 LARP_6 La RNA-binding 27.6 88 0.0019 15.4 2.7 15 44-58 27-41 (77)
281 PF00690 Cation_ATPase_N: Cati 27.5 76 0.0017 14.6 3.5 24 5-28 10-33 (69)
282 PF11848 DUF3368: Domain of un 27.4 67 0.0015 14.0 3.9 32 12-43 14-46 (48)
283 PF12793 SgrR_N: Sugar transpo 27.3 1.1E+02 0.0023 16.2 3.1 34 5-44 10-43 (115)
284 PRK12821 aspartyl/glutamyl-tRN 26.9 2E+02 0.0044 19.4 4.5 33 12-44 385-417 (477)
285 PTZ00315 2'-phosphotransferase 26.8 2.1E+02 0.0045 19.9 4.4 35 9-43 399-433 (582)
286 PF13677 MotB_plug: Membrane M 26.8 57 0.0012 14.9 1.4 16 48-63 14-30 (58)
287 PF02188 GoLoco: GoLoco motif; 26.5 22 0.00047 13.3 -0.0 12 55-66 2-13 (23)
288 cd03035 ArsC_Yffb Arsenate Red 26.3 1E+02 0.0023 15.8 4.5 50 13-65 33-85 (105)
289 PF08485 Polysacc_syn_2C: Poly 26.2 77 0.0017 14.2 2.2 21 8-28 24-44 (48)
290 PF11593 Med3: Mediator comple 25.8 2E+02 0.0043 18.8 4.0 49 14-64 6-55 (379)
291 PRK00188 trpD anthranilate pho 25.8 1.8E+02 0.0039 18.3 5.5 16 29-44 13-28 (339)
292 PRK14607 bifunctional glutamin 25.8 2.2E+02 0.0047 19.3 6.0 43 29-72 205-247 (534)
293 PHA02142 putative RNA ligase 25.8 43 0.00092 21.6 1.2 29 4-32 274-302 (366)
294 PF00619 CARD: Caspase recruit 25.8 90 0.0019 14.8 2.9 47 13-64 28-74 (85)
295 PF05383 La: La domain; Inter 25.5 60 0.0013 15.0 1.4 20 41-60 21-40 (61)
296 cd04769 HTH_MerR2 Helix-Turn-H 25.4 1.1E+02 0.0024 15.8 4.7 39 24-66 51-89 (116)
297 PF12419 DUF3670: SNF2 Helicas 25.3 1.3E+02 0.0027 16.4 4.8 49 12-60 80-138 (141)
298 TIGR00973 leuA_bact 2-isopropy 25.2 2.2E+02 0.0047 19.1 4.8 47 19-65 332-380 (494)
299 KOG0871 Class 2 transcription 24.9 1.4E+02 0.0031 16.8 3.3 27 5-31 56-82 (156)
300 PLN02321 2-isopropylmalate syn 24.9 2.2E+02 0.0048 20.0 4.3 47 19-65 431-479 (632)
301 TIGR02660 nifV_homocitr homoci 24.7 1.8E+02 0.0039 18.5 3.8 42 19-60 320-364 (365)
302 COG0541 Ffh Signal recognition 24.5 1.5E+02 0.0031 19.9 3.3 44 18-64 296-339 (451)
303 PF14848 HU-DNA_bdg: DNA-bindi 24.5 1.2E+02 0.0027 16.0 4.2 33 12-44 25-57 (124)
304 smart00540 LEM in nuclear memb 24.2 81 0.0017 13.8 2.2 15 16-30 6-20 (44)
305 cd08316 Death_FAS_TNFRSF6 Deat 24.1 1.2E+02 0.0025 15.6 3.5 28 14-43 16-43 (97)
306 smart00390 GoLoco LGN motif, p 24.0 63 0.0014 12.5 1.6 14 55-68 2-15 (26)
307 PHA02102 hypothetical protein 23.9 44 0.00096 15.9 0.8 14 46-59 34-47 (72)
308 COG1859 KptA RNA:NAD 2'-phosph 23.8 1.7E+02 0.0038 17.4 3.9 34 10-43 54-87 (211)
309 PF09808 SNAPc_SNAP43: Small n 23.6 1.6E+02 0.0034 16.9 3.2 28 35-64 4-31 (194)
310 PRK11639 zinc uptake transcrip 23.6 1.5E+02 0.0032 16.6 4.0 42 20-63 12-53 (169)
311 PF07261 DnaB_2: Replication i 23.3 97 0.0021 14.4 2.2 58 5-64 2-60 (77)
312 PRK13696 hypothetical protein; 23.1 1E+02 0.0022 14.6 2.7 14 50-63 21-34 (62)
313 PF13099 DUF3944: Domain of un 23.1 77 0.0017 13.2 2.4 21 32-52 13-33 (35)
314 TIGR03849 arch_ComA phosphosul 23.0 1.9E+02 0.0041 17.6 6.0 49 12-60 167-222 (237)
315 TIGR01446 DnaD_dom DnaD and ph 22.8 1E+02 0.0022 14.3 3.0 49 5-55 2-51 (73)
316 COG1448 TyrB Aspartate/tyrosin 22.7 2.4E+02 0.0051 18.6 4.1 46 5-53 147-208 (396)
317 TIGR00959 ffh signal recogniti 22.5 1.6E+02 0.0035 19.4 3.3 30 32-64 310-339 (428)
318 PF08671 SinI: Anti-repressor 22.4 74 0.0016 12.7 2.8 8 32-39 17-24 (30)
319 PF09967 DUF2201: VWA-like dom 22.3 90 0.002 16.6 1.9 17 11-27 6-22 (126)
320 PRK08136 glycosyl transferase 22.3 2.2E+02 0.0047 18.0 4.9 28 14-41 18-46 (317)
321 PRK04280 arginine repressor; P 22.2 1.6E+02 0.0034 16.3 3.4 37 15-51 18-58 (148)
322 PF07531 TAFH: NHR1 homology t 22.2 1.3E+02 0.0029 15.5 2.5 30 36-68 28-57 (96)
323 TIGR01425 SRP54_euk signal rec 22.2 1.3E+02 0.0029 19.9 2.9 27 35-64 313-339 (429)
324 PF04558 tRNA_synt_1c_R1: Glut 22.1 72 0.0016 18.0 1.5 32 33-64 83-114 (164)
325 PF03469 XH: XH domain; Inter 22.1 1.4E+02 0.0029 16.4 2.5 17 50-66 4-20 (132)
326 PF15144 DUF4576: Domain of un 22.1 38 0.00083 16.9 0.4 33 13-45 38-70 (88)
327 PF07739 TipAS: TipAS antibiot 22.1 1.3E+02 0.0027 15.2 3.6 16 29-44 51-66 (118)
328 COG5394 Uncharacterized protei 22.0 1.8E+02 0.0038 16.8 4.9 59 6-65 19-88 (193)
329 KOG2243 Ca2+ release channel ( 21.9 1.1E+02 0.0023 24.5 2.6 26 40-65 4062-4087(5019)
330 PF07766 LETM1: LETM1-like pro 21.8 1.6E+02 0.0035 17.9 3.1 29 12-40 216-247 (268)
331 PF09966 DUF2200: Uncharacteri 21.8 1.4E+02 0.003 15.9 2.4 35 17-60 24-59 (111)
332 PF02671 PAH: Paired amphipath 21.8 87 0.0019 13.3 2.0 14 54-67 4-17 (47)
333 PRK11911 flgD flagellar basal 21.7 1.2E+02 0.0026 16.8 2.3 13 51-63 25-37 (140)
334 PRK06402 rpl12p 50S ribosomal 21.6 1.4E+02 0.0031 15.7 5.3 40 15-59 16-55 (106)
335 KOG3741 Poly(A) ribonuclease s 21.5 1.4E+02 0.0031 20.8 2.9 55 4-63 591-647 (655)
336 cd08784 Death_DRs Death Domain 21.5 1.2E+02 0.0026 14.7 3.3 24 15-40 8-31 (79)
337 PF14237 DUF4339: Domain of un 21.4 86 0.0019 13.2 1.4 19 9-27 7-25 (45)
338 PF07592 DDE_Tnp_ISAZ013: Rhod 21.2 2.3E+02 0.005 18.0 4.0 30 15-44 24-53 (311)
339 PLN02641 anthranilate phosphor 21.1 2.4E+02 0.0051 18.0 5.2 16 29-44 14-29 (343)
340 PF09820 AAA-ATPase_like: Pred 20.8 1.6E+02 0.0035 17.9 3.0 36 31-66 224-259 (284)
341 PRK00771 signal recognition pa 20.7 1.7E+02 0.0037 19.3 3.2 27 35-64 306-332 (437)
342 PRK10867 signal recognition pa 20.6 1.7E+02 0.0038 19.3 3.2 28 33-63 312-339 (433)
343 COG0735 Fur Fe2+/Zn2+ uptake r 20.6 1.7E+02 0.0036 16.0 4.6 44 18-63 5-48 (145)
344 KOG4776 Uncharacterized conser 20.5 1.4E+02 0.003 18.1 2.5 38 37-74 190-227 (235)
345 PF09010 AsiA: Anti-Sigma Fact 20.4 1.4E+02 0.0031 15.3 3.0 25 51-75 49-73 (91)
346 PF09687 PRESAN: Plasmodium RE 20.2 1.4E+02 0.0031 15.2 3.8 30 15-44 5-34 (129)
347 smart00874 B5 tRNA synthetase 20.1 1.1E+02 0.0025 14.0 3.7 17 29-45 16-32 (71)
348 cd04411 Ribosomal_P1_P2_L12p R 20.1 1.5E+02 0.0033 15.4 6.9 43 16-63 17-59 (105)
349 PRK05849 hypothetical protein; 20.1 2.4E+02 0.0052 20.4 3.9 44 12-62 471-514 (783)
350 PRK06009 flgD flagellar basal 20.0 1.2E+02 0.0027 16.8 2.1 15 51-65 32-46 (140)
351 PF00427 PBS_linker_poly: Phyc 20.0 1.1E+02 0.0024 16.7 1.9 16 48-63 41-56 (131)
No 1
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.69 E-value=1.2e-16 Score=80.61 Aligned_cols=66 Identities=9% Similarity=0.138 Sum_probs=60.6
Q ss_pred CHHHHhhhcc-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 1 MEDVFKVMDK-DGDGRLSHDDLKSYMNC-AGFAATD-DDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 1 ~~~~F~~~d~-~~~g~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
+..+|+.||+ +++|.|+..||+.++.. +|..++. .+++.+++.+|.++||.|+|+||+.++.....
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 4679999999 99999999999999999 8877887 89999999999999999999999999987643
No 2
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.67 E-value=3.3e-16 Score=74.92 Aligned_cols=61 Identities=28% Similarity=0.496 Sum_probs=53.8
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHH----HHHHHhhCCCCCCCccHHHHHHHH
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDI----KAMIRLGGEDENDGVSSPSFSNSL 61 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~----~~~~~~~d~~~~~~i~~~ef~~~l 61 (76)
++.+|..+|++++|.|+.+||..++..++...+..++ +.+++.+|.+++|.|+|+||+.++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4689999999999999999999999999877666554 445999999999999999999875
No 3
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.66 E-value=9.5e-16 Score=77.30 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=59.8
Q ss_pred CHHHHhhhc-cCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 1 MEDVFKVMD-KDGDG-RLSHDDLKSYMNC-----AGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 1 ~~~~F~~~d-~~~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
++++|+.|| ++++| .|+..+|+.+|+. +|..+++.++..+++.+|.+++|.|+|++|+.++....
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 468999998 79999 5999999999999 89989999999999999999999999999999987653
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.65 E-value=9.2e-16 Score=83.86 Aligned_cols=76 Identities=21% Similarity=0.464 Sum_probs=67.8
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccC------CHHHHhh
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSS------SKSKLRN 74 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~------~~~el~~ 74 (76)
++.+|..||++++|.|+..+|..+++.+|..++..++..++..+|.+++|.|++++|+.++...... ..+++++
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~e 89 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKE 89 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999986542 2347776
Q ss_pred hC
Q 034995 75 SL 76 (76)
Q Consensus 75 ~~ 76 (76)
+|
T Consensus 90 aF 91 (151)
T KOG0027|consen 90 AF 91 (151)
T ss_pred HH
Confidence 64
No 5
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.64 E-value=2.2e-15 Score=82.76 Aligned_cols=75 Identities=20% Similarity=0.494 Sum_probs=68.6
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc--CCHHHHhhhC
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS--SSKSKLRNSL 76 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~--~~~~el~~~~ 76 (76)
++++|..+|++++|.|+..+|..+++.+|.++++.++.+++..++. +++.|+|.+|+.+|..... ...++|+.||
T Consensus 22 lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 22 LKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4789999999999999999999999999999999999999999998 9999999999999999764 3357888774
No 6
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.62 E-value=2.2e-15 Score=82.37 Aligned_cols=63 Identities=33% Similarity=0.495 Sum_probs=60.3
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
++++|+.||++++|.|+..||+.+|..+|...+.+++..+++..+.+++|.|+|++|+.++..
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999999999999999999864
No 7
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.61 E-value=3.3e-15 Score=82.04 Aligned_cols=64 Identities=22% Similarity=0.449 Sum_probs=60.6
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
++.+|+.||.+++|.|+..+|..++..+|...++++++++++.++.+++|.|+|++|...+...
T Consensus 94 l~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 94 LREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred HHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhcc
Confidence 4689999999999999999999999999999999999999999999999999999999988654
No 8
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.57 E-value=3.9e-14 Score=67.61 Aligned_cols=62 Identities=19% Similarity=0.504 Sum_probs=56.8
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
++++|..+|++++|.|+..|+..++..+|. +++++..++..++.+++|.|+|++|+.++...
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 478999999999999999999999998874 78889999999999999999999999998754
No 9
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.57 E-value=2.2e-14 Score=73.02 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=58.1
Q ss_pred CHHHHhhhcc-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 1 MEDVFKVMDK-DG-DGRLSHDDLKSYMNC-----AGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 1 ~~~~F~~~d~-~~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
++.+|..||. ++ +|.|+..||+.++.. +|..+++.+++.++..+|.+++|.|+|++|+.++....
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4679999997 87 699999999999986 56788999999999999999999999999999997653
No 10
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.56 E-value=3.6e-14 Score=71.95 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=57.8
Q ss_pred CHHHHhhhc-cCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 1 MEDVFKVMD-KDGDG-RLSHDDLKSYMNC-AG----FAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 1 ~~~~F~~~d-~~~~g-~i~~~el~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
++++|..|| ++++| .|+..||+.+++. +| ..+++.+++.++..+|.+++|.|+|++|+.++.....
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 468999997 99999 5999999999985 43 4568899999999999999999999999999987543
No 11
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.56 E-value=2.9e-14 Score=71.90 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=58.3
Q ss_pred HHHHhhhcc-CC-CCcccHHHHHHHHH---HcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 2 EDVFKVMDK-DG-DGRLSHDDLKSYMN---CAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 2 ~~~F~~~d~-~~-~g~i~~~el~~~l~---~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
-.+|+.|+. ++ +|.|+..||+.++. .+|..++++++.++++..|.+++|.|+|++|+.++.+...
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 468999998 67 89999999999996 3688899999999999999999999999999999987543
No 12
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.55 E-value=5.3e-14 Score=71.56 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=56.1
Q ss_pred HHHHhhhc-cCCCC-cccHHHHHHHHHH-c----CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 2 EDVFKVMD-KDGDG-RLSHDDLKSYMNC-A----GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 2 ~~~F~~~d-~~~~g-~i~~~el~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
+++|+.|| ++++| .|+..||+.++.. + +...++.++..++..+|.+++|.|+|+||+.++.....
T Consensus 13 ~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 13 IRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 57899999 78998 5999999999976 2 34457789999999999999999999999999987643
No 13
>PF14658 EF-hand_9: EF-hand domain
Probab=99.53 E-value=9.8e-14 Score=66.02 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=58.4
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhhCCCCC-CCccHHHHHHHHHhh
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGF-AATDDDIKAMIRLGGEDEN-DGVSSPSFSNSLLIA 64 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~l~~~ 64 (76)
.+|..||+++.|.|...++..+|+.++. .+++.+++.+.+.+|+++. |.|++++|+..|+.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 4799999999999999999999999988 8999999999999999888 999999999999865
No 14
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.50 E-value=1.9e-13 Score=69.83 Aligned_cols=62 Identities=18% Similarity=0.361 Sum_probs=56.6
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
++.+|..+|++++|.|+..+++.+++..| +++.++..++..++.+++|.|+|++|+.++...
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 36789999999999999999999999865 678899999999999999999999999988764
No 15
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.50 E-value=1.9e-13 Score=68.72 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=57.1
Q ss_pred CHHHHhhhcc--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 1 MEDVFKVMDK--DGDGRLSHDDLKSYMNC-AGFA----ATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 1 ~~~~F~~~d~--~~~g~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
++.+|..+|+ +++|.|+..++..++.. +|.. +++.++..++..++.+++|.|+|++|+.++....
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 3678999999 89999999999999976 4544 3588999999999999999999999999998764
No 16
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=2.8e-13 Score=73.98 Aligned_cols=76 Identities=16% Similarity=0.424 Sum_probs=68.5
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc--CCHHHHhhhC
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS--SSKSKLRNSL 76 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~--~~~~el~~~~ 76 (76)
++.+|..||+++.|.|+..||..+++.+|+.+..+++.+++..++.++.|.|+|++|+..++.... ...++|+.+|
T Consensus 35 i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 35 IKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999999999988653 4457877664
No 17
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.48 E-value=3.8e-13 Score=61.99 Aligned_cols=52 Identities=13% Similarity=0.335 Sum_probs=49.0
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 12 GDGRLSHDDLKSYMNCAGFA-ATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
++|.|+.++|..++..+|.. ++++++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999999864
No 18
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.46 E-value=1e-12 Score=60.95 Aligned_cols=61 Identities=30% Similarity=0.580 Sum_probs=57.1
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSL 61 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 61 (76)
+..+|..+|.+++|.|+.+++..++..++...+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 3678999999999999999999999999999999999999999999999999999998765
No 19
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.42 E-value=2.1e-12 Score=65.21 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=55.4
Q ss_pred CHHHHhh-hccCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 1 MEDVFKV-MDKDGDG-RLSHDDLKSYMNCA-----GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 1 ~~~~F~~-~d~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
+..+|+. +|++++| .|+.+||+.++... +...++.++..+++.+|.++||.|+|+||+.++....
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 3578998 6788875 99999999999875 3355678899999999999999999999999987754
No 20
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.39 E-value=2.4e-12 Score=73.35 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=61.1
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
|+.+|+.+|+|++|.|+.+||+.+|..+|..++.+.++.+++.++..++|.|.|++|+.++....
T Consensus 126 Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 126 WRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999988899999999999998754
No 21
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=2.5e-12 Score=70.34 Aligned_cols=63 Identities=24% Similarity=0.421 Sum_probs=60.0
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
++.+|+.+|-+++|.|+..+|+.+...+|.+++++++.+|+..++.+++|.|+-++|..+|+.
T Consensus 108 i~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 108 IKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 468999999999999999999999999999999999999999999999999999999998864
No 22
>PTZ00183 centrin; Provisional
Probab=99.38 E-value=5.9e-12 Score=68.56 Aligned_cols=64 Identities=25% Similarity=0.468 Sum_probs=59.0
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
++.+|..+|.+++|.|+..+|..+++.+|..++..++..++..++.+++|.|+|.+|+.++...
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 3678999999999999999999999999988899999999999999999999999999988764
No 23
>PTZ00183 centrin; Provisional
Probab=99.37 E-value=5e-12 Score=68.85 Aligned_cols=62 Identities=23% Similarity=0.391 Sum_probs=56.4
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
+.+|..+|++++|.|+..++..++..+|..++..++..++..++.+++|.|+|++|..++..
T Consensus 93 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 93 LKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 56899999999999999999999998888899999999999999999999999999998865
No 24
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.36 E-value=5.6e-12 Score=68.64 Aligned_cols=71 Identities=20% Similarity=0.407 Sum_probs=62.5
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccCCH--HHHhhh
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSSSK--SKLRNS 75 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~--~el~~~ 75 (76)
++++|...|+|++|.|..++|+.++..+|..+++++++.|+++. .|.|+|.-|++++...+++.+ +.|..|
T Consensus 34 fKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~~A 106 (171)
T KOG0031|consen 34 FKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVILNA 106 (171)
T ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 47899999999999999999999999999999999999999875 678999999999999876554 455554
No 25
>PTZ00184 calmodulin; Provisional
Probab=99.34 E-value=7.3e-12 Score=67.42 Aligned_cols=61 Identities=30% Similarity=0.555 Sum_probs=54.5
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLL 62 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 62 (76)
+.+|..+|.+++|.|+..++..++..+|..++.+++..++..++.+++|.|+|++|+.++.
T Consensus 87 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 87 KEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 4688999999999999999999999888888889999999999999999999999988774
No 26
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.32 E-value=1.3e-11 Score=64.98 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=50.3
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSL 61 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 61 (76)
.-+|..+|.|++|.|+.+||..+. ....+..+..++..+|.++||.||++||..++
T Consensus 51 ~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 51 GWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 458999999999999999999876 34556778999999999999999999999999
No 27
>PTZ00184 calmodulin; Provisional
Probab=99.31 E-value=2.1e-11 Score=65.62 Aligned_cols=64 Identities=27% Similarity=0.489 Sum_probs=59.2
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
+..|..+|.+++|.|+..++..++..++..++..++..++..++.+++|.|+|++|+.++....
T Consensus 14 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 77 (149)
T PTZ00184 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKM 77 (149)
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhc
Confidence 5789999999999999999999999999888888999999999999999999999999987653
No 28
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.30 E-value=1.8e-11 Score=61.72 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=55.7
Q ss_pred HHHHhhhccC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 2 EDVFKVMDKD--GDGRLSHDDLKSYMN-CAGFAAT----DDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 2 ~~~F~~~d~~--~~g~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
...|+.|+.+ ++|.|+..||+.++. .+|..++ +.++..++..+|.+++|.|+|++|+.++.....
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 4678889865 479999999999996 5566666 889999999999999999999999999987543
No 29
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.24 E-value=4.3e-11 Score=67.82 Aligned_cols=66 Identities=30% Similarity=0.322 Sum_probs=61.7
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccC
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSS 67 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 67 (76)
..+|..||.+.+|+|+..||+.+|.++|.+.+.--++.+|+.+|.|.+|.|+|-+|+-+++....+
T Consensus 102 ~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaag 167 (244)
T KOG0041|consen 102 ESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAG 167 (244)
T ss_pred HHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999999999999999999999999886653
No 30
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.23 E-value=3.4e-11 Score=64.62 Aligned_cols=66 Identities=14% Similarity=0.293 Sum_probs=59.4
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC--CCCCccHHHHHHHHHhhcc
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGED--ENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~l~~~~~ 66 (76)
++++|..||..++|+|+.+++...|+++|.+|++.++.+.+..+..+ +-.+|+|++|+.++....+
T Consensus 13 ~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 13 FKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999888765 4578999999999987543
No 31
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.23 E-value=7e-11 Score=66.70 Aligned_cols=64 Identities=23% Similarity=0.382 Sum_probs=53.3
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc-CCCCC--HHH----HHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA-GFAAT--DDD----IKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~-~~~~~--~~~----~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
+-+|+.||.+++|.|+.+|+..+++.+ +...+ ++. ++.++..+|.++||.|+|+||.+.+.+.+
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 458999999999999999999999986 43344 443 45678999999999999999999997753
No 32
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.14 E-value=3.7e-10 Score=61.63 Aligned_cols=63 Identities=22% Similarity=0.429 Sum_probs=59.5
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
+..+|..||.++.|.|..+.|+.+|-..|-.++.++++.+++.+..+..|.++|..|+.++..
T Consensus 103 I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 357899999999999999999999999999999999999999999999999999999999973
No 33
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.13 E-value=2.5e-10 Score=61.33 Aligned_cols=59 Identities=19% Similarity=0.458 Sum_probs=53.5
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLL 62 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 62 (76)
+..+.||++++|.|+..||+.+|-.+|..+++++++.++.-.. |++|.|+|+.|+..+.
T Consensus 92 egLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 92 EGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 4578999999999999999999999999999999999987764 7899999999998763
No 34
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.08 E-value=2.1e-09 Score=54.34 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=52.8
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNC-----AGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
..+|+.|.. +.+.++..||+.++.. +.....+..++.+++..|.|+||.|+|.||+.++.....
T Consensus 11 I~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 11 MLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 467888884 4679999999999875 233456678999999999999999999999999987543
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=99.05 E-value=1.2e-09 Score=70.83 Aligned_cols=57 Identities=14% Similarity=0.304 Sum_probs=28.6
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAG-FAATDDD---IKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
++|..+|++++|.+ +..+++.+| ..+++.+ ++.++..+|.+++|.|+++||+.++..
T Consensus 147 eaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~ 207 (644)
T PLN02964 147 ESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA 207 (644)
T ss_pred HHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 44555555555543 444455555 2444443 445555555555555555555555543
No 36
>PLN02964 phosphatidylserine decarboxylase
Probab=99.01 E-value=2e-09 Score=69.90 Aligned_cols=63 Identities=14% Similarity=0.313 Sum_probs=59.1
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
+.+|..+|.+++|.|+..||..++..++...+++++..+++.+|.+++|.|+++||..++...
T Consensus 182 ~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 182 RRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 578999999999999999999999998888899999999999999999999999999999874
No 37
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.98 E-value=2.1e-09 Score=60.98 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=56.5
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
..+|+.||.+++|.|+..|+..++..+.....++-+..+++.||.+++|.|+++|++.++...
T Consensus 67 ~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 67 ELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 468999999999999999988888887777777778889999999999999999999998874
No 38
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.87 E-value=9.7e-09 Score=63.51 Aligned_cols=66 Identities=17% Similarity=0.381 Sum_probs=61.4
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccC
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSS 67 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 67 (76)
.++|+.+|.+++|.|..+|+...++.+|..++++++.+++..+|.++++.|+|+||...+.-.+.+
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s 150 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPES 150 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChh
Confidence 578999999999999999999999999999999999999999999999999999999888766633
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.86 E-value=2.5e-09 Score=43.40 Aligned_cols=26 Identities=35% Similarity=0.804 Sum_probs=16.8
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNC 27 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~ 27 (76)
+.+|+.+|+|++|.|+.+||..+++.
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 45666666666666666666666654
No 40
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.83 E-value=7.8e-09 Score=41.95 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=25.7
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 36 DIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 36 ~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
+++.+++.+|.|+||.|+++||..++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5788999999999999999999999864
No 41
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.81 E-value=1.6e-08 Score=57.45 Aligned_cols=61 Identities=13% Similarity=0.364 Sum_probs=50.6
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHc----CC-------CCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCA----GF-------AATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
+|+.||.+++|.|+..|+..++... |. ...++-+..+++.+|.|.||.|++++|...+...
T Consensus 105 ~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 105 AFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred hheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 5999999999999999998888763 32 1134567889999999999999999999887654
No 42
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.78 E-value=5.5e-08 Score=44.08 Aligned_cols=49 Identities=8% Similarity=0.218 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
+++..|++.+|+.+...+++..+..+++..|.+++|.+..+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999998865
No 43
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.74 E-value=1.1e-08 Score=42.05 Aligned_cols=29 Identities=34% Similarity=0.816 Sum_probs=23.9
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHH-HcC
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMN-CAG 29 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~-~~~ 29 (76)
++.+|..+|++++|.|+..||..+++ .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 36789999999999999999999988 454
No 44
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.72 E-value=9.1e-08 Score=59.34 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=56.9
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFA-ATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
++..|..+|.+++|.++..++.+.+..+..+ +.......++..+|.+.+|.++|++|.+++...
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~ 80 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK 80 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh
Confidence 3678999999999999999999999998777 666677889999999999999999999998653
No 45
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.67 E-value=1.4e-07 Score=48.87 Aligned_cols=60 Identities=18% Similarity=0.419 Sum_probs=51.2
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
..+|...++ ++|.|+..+...++...+ ++.+.+..+|...|.+++|.++++||+..|+-.
T Consensus 13 ~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 13 DQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 467888885 579999999999998865 677889999999999999999999999887753
No 46
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.65 E-value=1.5e-07 Score=59.07 Aligned_cols=63 Identities=21% Similarity=0.394 Sum_probs=55.8
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc----CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA----GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
.-+|+.+|.|++|.|+.+||+.+...+ ...+++.++.++-+.+|.++||.|++.||+..++-.
T Consensus 550 etiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 550 ETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 468999999999999999999987764 556788999999999999999999999999988653
No 47
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.64 E-value=1.1e-07 Score=66.29 Aligned_cols=75 Identities=20% Similarity=0.434 Sum_probs=62.3
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCC-------HHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccC---CHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAAT-------DDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSS---SKSK 71 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~---~~~e 71 (76)
.-+|..||++.+|.++..+|+.+|+.+|..++ +.++.+++..+|++.+|+|+..+|+.+|...-.. +.++
T Consensus 2256 s~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~e 2335 (2399)
T KOG0040|consen 2256 SMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEE 2335 (2399)
T ss_pred HHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHH
Confidence 45899999999999999999999999988752 3378999999999999999999999999876432 2346
Q ss_pred HhhhC
Q 034995 72 LRNSL 76 (76)
Q Consensus 72 l~~~~ 76 (76)
|..||
T Consensus 2336 IE~Af 2340 (2399)
T KOG0040|consen 2336 IEDAF 2340 (2399)
T ss_pred HHHHH
Confidence 65543
No 48
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.58 E-value=2e-07 Score=57.96 Aligned_cols=50 Identities=18% Similarity=0.368 Sum_probs=44.4
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
..+|+.+|.+++|.|+..|+.. +..+|..+|.|++|.|+++||...+...
T Consensus 337 ~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 337 QEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5789999999999999999841 4778999999999999999999988753
No 49
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.54 E-value=6.1e-07 Score=51.58 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=54.1
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA-GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
...|...|+++.|.|+.+||..+|... .-+.+.+-++.|+..+|.+.+|.|+++||..++..
T Consensus 60 ~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~ 122 (221)
T KOG0037|consen 60 AGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY 122 (221)
T ss_pred HHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Confidence 357899999999999999999999854 33567788899999999999999999999988765
No 50
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.50 E-value=5.4e-07 Score=49.25 Aligned_cols=63 Identities=27% Similarity=0.419 Sum_probs=52.4
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHc-CCCCCHHHH----HHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCA-GFAATDDDI----KAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~----~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
-+|+.||-++++.|-..+|...+..+ ...++.+++ .+.+.+.|.++||.+++.+|..++.+.+
T Consensus 112 YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 112 YAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred heeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 46888999999999999999988875 335666665 5578889999999999999999998754
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.48 E-value=1.4e-07 Score=36.98 Aligned_cols=23 Identities=35% Similarity=0.845 Sum_probs=15.9
Q ss_pred HHHHhhhccCCCCcccHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSY 24 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~ 24 (76)
+.+|+.+|.|++|.|+..|+..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777654
No 52
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=1.2e-06 Score=52.88 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=54.5
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFA-ATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
++.|...|.|++|.++.+||..++..--.+ +..-.+...+...|.|+||.|+++||+.-|.....
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~ 231 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEG 231 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccC
Confidence 467999999999999999999988764333 44446788899999999999999999998887653
No 53
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.34 E-value=1.3e-07 Score=49.66 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=40.7
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHH
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNS 60 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 60 (76)
.|..+|.+++|.|+..|+..+...+ .+.+.=+..++...|.++|+.|+..||..+
T Consensus 59 ~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 59 KFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 5899999999999999998776544 455555788999999999999999999764
No 54
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.33 E-value=6.2e-06 Score=46.83 Aligned_cols=65 Identities=14% Similarity=0.285 Sum_probs=49.5
Q ss_pred HHHHhhhccCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 2 EDVFKVMDKDGDGR-LSHDDLKSYMNCAGFAATDD-DIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 2 ~~~F~~~d~~~~g~-i~~~el~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
.++++.++++++|. |+..++-..+.......+.. .++-.++.||.+++|.|+.+++..++.....
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 35677788877777 88888877777664444444 5666888899999999999999998887654
No 55
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.24 E-value=2.1e-06 Score=33.56 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=22.0
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHH
Q 034995 37 IKAMIRLGGEDENDGVSSPSFSNSL 61 (76)
Q Consensus 37 ~~~~~~~~d~~~~~~i~~~ef~~~l 61 (76)
+++++..+|.|+||.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 56
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.24 E-value=9.8e-07 Score=52.01 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=51.7
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHH-cCCCC--CHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccCCHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNC-AGFAA--TDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSSSKSK 71 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~-~~~~~--~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~e 71 (76)
..+|...|-+.+|+|+..|+++++.. +.... +.++-+..|...|.++||+|+|++|..-+......+..+
T Consensus 104 mviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghseke 176 (362)
T KOG4251|consen 104 MVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKE 176 (362)
T ss_pred HHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHH
Confidence 56899999999999999999887664 22111 112234467888999999999999988877766554443
No 57
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=2.2e-06 Score=51.77 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=53.9
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
..|...|+|++|+++..|++.++..-+....+.+++-++...|.|+||++|++|.+.-.-..
T Consensus 245 ~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d~F 306 (325)
T KOG4223|consen 245 QFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHYDVF 306 (325)
T ss_pred HHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhCccee
Confidence 35567799999999999999999888888889999999999999999999999987644433
No 58
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.22 E-value=6.6e-06 Score=52.69 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=54.5
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFA---ATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
++.|...| +++|+++..++..++.+.+.. ...++++.++...+.+.+|.|+|++|+.++....
T Consensus 22 ~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 22 KEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 57899999 999999999999999987544 3578899999999999999999999999776543
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.10 E-value=6.5e-06 Score=33.55 Aligned_cols=28 Identities=7% Similarity=0.097 Sum_probs=24.3
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 36 DIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 36 ~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
+++.++..+|.+++|.|+++||..++..
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3678999999999999999999999874
No 60
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.81 E-value=4.3e-05 Score=37.81 Aligned_cols=65 Identities=15% Similarity=0.349 Sum_probs=52.4
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHhhCCC----CCCCccHHHHHHHHHhhcc
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCA-GF-AATDDDIKAMIRLGGED----ENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~l~~~~~ 66 (76)
+..+|..+-. +.+.++.++|..+|+.- +. ..+.+++..++..+..+ ..+.+++++|..+|....+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 3578999955 79999999999999864 33 35788999999988644 4789999999999977654
No 61
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.81 E-value=3.6e-05 Score=29.60 Aligned_cols=25 Identities=32% Similarity=0.909 Sum_probs=14.8
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMN 26 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~ 26 (76)
+.+|..+|.+++|.|+..++..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4556666666666666666655554
No 62
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00027 Score=37.41 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=43.0
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHc------CC----CCCHHHHHHHH----HhhCCCCCCCccHHHHHH
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCA------GF----AATDDDIKAMI----RLGGEDENDGVSSPSFSN 59 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~------~~----~~~~~~~~~~~----~~~d~~~~~~i~~~ef~~ 59 (76)
..|.+.|-|+++.++.-|+..++--. |. -+++.++..++ +.-|.|+||.|+|.||+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 35888899999999999998887643 22 13455665554 445789999999999975
No 63
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.67 E-value=9.9e-05 Score=28.27 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.7
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 37 IKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 37 ~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
++.++..++.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999988864
No 64
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.38 E-value=0.00093 Score=42.69 Aligned_cols=63 Identities=19% Similarity=0.344 Sum_probs=49.2
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc-CCCCC----------------------------------------------H
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA-GFAAT----------------------------------------------D 34 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~-~~~~~----------------------------------------------~ 34 (76)
.+.|+.+|.++.|.|+.+.+..++... |++++ .
T Consensus 467 ~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~k 546 (631)
T KOG0377|consen 467 EDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNK 546 (631)
T ss_pred HHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhch
Confidence 567999999999999999999988863 44333 1
Q ss_pred HHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 35 DDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 35 ~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
..+..+|..+|.+.+|.|+.+||...+.-.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~ 576 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLL 576 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHH
Confidence 123557888899999999999999877653
No 65
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.31 E-value=0.00027 Score=32.04 Aligned_cols=26 Identities=38% Similarity=0.721 Sum_probs=23.1
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNC 27 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~ 27 (76)
..+|..+|.+++|.|+..||..++..
T Consensus 28 ~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 28 DRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 56899999999999999999988753
No 66
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.22 E-value=0.00032 Score=32.97 Aligned_cols=24 Identities=42% Similarity=0.981 Sum_probs=21.3
Q ss_pred HHHHhhhccCCCCcccHHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYM 25 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l 25 (76)
..+|+.+|++++|.|+..|+..++
T Consensus 43 ~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 43 DQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHhCCCCcCCCcHHHHhccC
Confidence 457999999999999999998764
No 67
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.00042 Score=43.89 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=43.5
Q ss_pred CCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 12 GDGRLSHDDLKSYMNC-AGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
..+.|+..+++.+... .|..+++..++-.+..+|.|+||.++.+||+.+|++..
T Consensus 401 Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rm 455 (489)
T KOG2643|consen 401 AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRM 455 (489)
T ss_pred cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHh
Confidence 3567777777776654 47778877777788899999999999999999998743
No 68
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.92 E-value=0.0025 Score=46.05 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=51.6
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
..|..||+|+.|.|+..++..+|... ...++.+++-++.-...+.+...+|++|+.-+...
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 35889999999999999999999853 35677788888888888899999999999877654
No 69
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.88 E-value=0.00095 Score=41.08 Aligned_cols=63 Identities=10% Similarity=0.222 Sum_probs=48.7
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCA-GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
.|..+|+|+++.|...|++.+=+.+ .......=.+++++..|.|+|..|++.|+..++.....
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 4888999999999999986654443 12233334577888899999999999999999976543
No 70
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.78 E-value=0.0038 Score=34.51 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=48.8
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHH-HHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDD-DIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
++-..|..+|.|.++..++..++.-++...+.+ .+.-.++.||-++|+.|.-++...++.+...
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr 139 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR 139 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh
Confidence 556678889999999999998887765443332 2334577889999999999999988887654
No 71
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.78 E-value=0.0095 Score=33.60 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=49.7
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCC-------------------------------------------------
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAAT------------------------------------------------- 33 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~------------------------------------------------- 33 (76)
+-..-||+|++|.|...|--.-++.+|+++-
T Consensus 11 qHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~e 90 (174)
T PF05042_consen 11 QHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTE 90 (174)
T ss_pred hhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccC
Confidence 3345689999999999998777777766321
Q ss_pred ----HHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 34 ----DDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 34 ----~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
.+..++++..++..+.+.+++.|...|+..+..
T Consensus 91 GrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 91 GRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred CcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 345678899998877888999999999987543
No 72
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.78 E-value=0.0052 Score=40.41 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=61.6
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccCCHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSSSKSK 71 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~e 71 (76)
+..|..+|.++.|.++..++..+|+..+...++..+.....+.+.+-+|.+...+|..++....++.-+.
T Consensus 596 ~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~~~ 665 (680)
T KOG0042|consen 596 KTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCTEG 665 (680)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCChHH
Confidence 4578899999999999999999999988888888899999999988899999999999999877665443
No 73
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.0034 Score=42.60 Aligned_cols=60 Identities=20% Similarity=0.373 Sum_probs=51.5
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
+..|..+|+...|.++...-+.+|-.-+ ++...+..+|..-|.|+||.++-+||.-.|.-
T Consensus 198 ~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 198 RQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred HHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 4689999999999999999999998755 55567888999999999999999999866653
No 74
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.63 E-value=0.0055 Score=41.19 Aligned_cols=65 Identities=12% Similarity=0.276 Sum_probs=57.3
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
..+|...|++++|.++..+...++..+...+....+..++++.+...++.+.+.+|..+......
T Consensus 139 ~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~ 203 (746)
T KOG0169|consen 139 HSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK 203 (746)
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc
Confidence 56899999999999999999999999988898888999999988889999999998888766543
No 75
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.62 E-value=0.0052 Score=38.21 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=49.4
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
+|..+|.+.++.++.+||+.+- ....+.=++.+|...|...||.|+-.||..++.+..
T Consensus 255 MFnklD~N~Dl~Ld~sEl~~I~----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 255 MFNKLDTNYDLLLDQSELRAIE----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhccccccccccCHHHhhhhh----ccCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 7999999999999999988643 345666688899999999999999999999887644
No 76
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.54 E-value=0.0047 Score=28.05 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=22.7
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~ 28 (76)
..+|+..|++++|.+..+|+..+.+.+
T Consensus 24 ~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 24 RQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 468999999999999999999887653
No 77
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.43 E-value=0.011 Score=37.85 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=45.5
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----hCCCCCCCccHHHHHHHHHhhc
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRL----GGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~----~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
.|-.+|+|++|.|+.++|...-.. ..+.--++.++.. .-...+|.++|++|+.++....
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred HHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 377889999999999999876643 3556667888873 3345788899999999987643
No 78
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.43 E-value=0.026 Score=31.24 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=47.6
Q ss_pred HHHHhhh---ccCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVM---DKDGDGRLSHDDLKSYMNCAG---FAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~---d~~~~g~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
+.+|..| -+.+...++...|..+++..+ ..++...++-+|..+-..+...|+|++|+..|...
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 4556655 356678899999999999753 35788889999999876666789999999999764
No 79
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.30 E-value=0.0054 Score=31.03 Aligned_cols=27 Identities=7% Similarity=0.335 Sum_probs=23.7
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~ 28 (76)
..+++.+|.+++|.|+..||..++..+
T Consensus 56 ~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 56 DKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 567899999999999999999888764
No 80
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.29 E-value=0.014 Score=25.93 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.5
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 37 IKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 37 ~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
+..++..++.+++|.|++.+|..++...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~ 29 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL 29 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 4567888999999999999999999875
No 81
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.12 E-value=0.0077 Score=30.39 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.7
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~ 28 (76)
..+++.+|.|++|.|+..||..++..+
T Consensus 50 ~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 50 EEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 568899999999999999998888754
No 82
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.09 E-value=0.017 Score=34.58 Aligned_cols=55 Identities=15% Similarity=0.420 Sum_probs=47.2
Q ss_pred hhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHH
Q 034995 6 KVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNS 60 (76)
Q Consensus 6 ~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 60 (76)
..+|.+++|.++.+||..++..+.+.....++..++..-+.+++.+++.++.+..
T Consensus 288 ElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 288 ELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 4679999999999999999887777777777888998899999999999987653
No 83
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=96.08 E-value=0.025 Score=28.60 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=25.0
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 36 DIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 36 ~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
.+...+..+|.+++|.|+.+++..++...
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 39 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS 39 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc
Confidence 45667888999999999999999999763
No 84
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.05 E-value=0.003 Score=31.91 Aligned_cols=29 Identities=17% Similarity=0.488 Sum_probs=24.4
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCC
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGF 30 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~ 30 (76)
..+|..+|.+++|.|+.++|..++...+.
T Consensus 54 ~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 54 DKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 46788899999999999999988876543
No 85
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.99 E-value=0.0093 Score=30.04 Aligned_cols=27 Identities=19% Similarity=0.450 Sum_probs=23.3
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~ 28 (76)
..++..+|.|++|.|+.+|+..++..+
T Consensus 55 ~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 55 DRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 467889999999999999999887754
No 86
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.97 E-value=0.035 Score=38.32 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=54.5
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHH-----HHHHHHHhhCCCCCCCccHHHHHHHHHhhccCCHHH
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDD-----DIKAMIRLGGEDENDGVSSPSFSNSLLIATSSSKSK 71 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~-----~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~e 71 (76)
++..|+.+++...|..+.+++...+..+|...-++ ++..++...+...-|.+++.+|...|.+.......+
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~ 824 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTE 824 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHH
Confidence 35789999999999999999999999998877652 233344555555568999999999999876544433
No 87
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.025 Score=36.99 Aligned_cols=60 Identities=13% Similarity=0.319 Sum_probs=50.8
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
.-|+-+-+|..|.|+.+--++++.+-. ++-+|+..+|...|.+.||.++..||+..+.-.
T Consensus 235 nQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 235 NQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred hhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 357778889999999999999888754 444789999999999999999999999888653
No 88
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.84 E-value=0.011 Score=31.35 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=22.0
Q ss_pred HHHHhhhccCCCCcccHHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYM 25 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l 25 (76)
..+|..+|.|++|.||..|++..+
T Consensus 83 ~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 83 KPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHH
Confidence 468899999999999999999988
No 89
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.67 E-value=0.037 Score=25.59 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=23.1
Q ss_pred HHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 38 KAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 38 ~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
+.++..+|.+++|.|+.+++..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~ 28 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS 28 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 457888999999999999999988764
No 90
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.62 E-value=0.047 Score=27.38 Aligned_cols=28 Identities=0% Similarity=0.032 Sum_probs=24.6
Q ss_pred HHHHHHHhhC-CCCCC-CccHHHHHHHHHh
Q 034995 36 DIKAMIRLGG-EDEND-GVSSPSFSNSLLI 63 (76)
Q Consensus 36 ~~~~~~~~~d-~~~~~-~i~~~ef~~~l~~ 63 (76)
.+...|..+| .+++| .|+.+++..+|..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 4678899998 78999 5999999999987
No 91
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.54 E-value=0.018 Score=28.82 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=22.9
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~ 28 (76)
..+|..+|.+++|.|+.++|..++..+
T Consensus 54 ~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 54 DKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 568889999999999999998877653
No 92
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.51 E-value=0.019 Score=28.81 Aligned_cols=27 Identities=19% Similarity=0.545 Sum_probs=23.2
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~ 28 (76)
..+|..+|++++|.|+..++..++..+
T Consensus 55 ~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 55 DKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 578889999999999999998887653
No 93
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=95.51 E-value=0.02 Score=28.77 Aligned_cols=27 Identities=7% Similarity=0.386 Sum_probs=22.7
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~ 28 (76)
.++|+.+|.+++|.|+.+||..++..+
T Consensus 54 ~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 54 AKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 467889999999999999998877653
No 94
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.42 E-value=0.021 Score=35.39 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=25.0
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCA-GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSL 61 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 61 (76)
..|..||.+++|.++..+--..+.-+ |...+..-++-.++.++.+.||.+.-.+|..++
T Consensus 263 ~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~il 322 (412)
T KOG4666|consen 263 PTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLIL 322 (412)
T ss_pred hhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHH
Confidence 34555555555554444433333222 222333333444444444444444444444333
No 95
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.36 E-value=0.043 Score=27.14 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=25.1
Q ss_pred HHHHHHHHhhCC--CCCCCccHHHHHHHHHh
Q 034995 35 DDIKAMIRLGGE--DENDGVSSPSFSNSLLI 63 (76)
Q Consensus 35 ~~~~~~~~~~d~--~~~~~i~~~ef~~~l~~ 63 (76)
..+...+..+|. +++|.|+..++..++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 346778999999 89999999999999865
No 96
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.32 E-value=0.02 Score=37.86 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=41.9
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAA----TDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~----~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
..+|..||.+++|.++..|+..++...+..+ ...+ .. -.+..|.+++..|+..+.-.
T Consensus 318 ~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~--~t----~~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 318 VDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKD--ST----VKNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred HHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccc--cc----eecccceeehhhHHHHHHHH
Confidence 5789999999999999999999998875444 1111 11 12368899999998877643
No 97
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.11 E-value=0.13 Score=32.15 Aligned_cols=65 Identities=9% Similarity=0.104 Sum_probs=51.4
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
++-+|.+|+-+.+|.+...+|..++.. ......-.+--++...+...++.|++++|..++....+
T Consensus 298 iq~afk~f~v~eDg~~ge~~ls~ilq~-~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~ 362 (412)
T KOG4666|consen 298 IQYAFKRFSVAEDGISGEHILSLILQV-VLGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEPN 362 (412)
T ss_pred HHHHHHhcccccccccchHHHHHHHHH-hcCcceeeccccchhhhcccCcceeHHHHHHHHHhCch
Confidence 356899999999999999888777765 34454445667888888888999999999998876543
No 98
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.88 E-value=0.039 Score=28.04 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.6
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~ 28 (76)
.+++..+|.|++|.|+..|+..++..+
T Consensus 51 d~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 51 DKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 468899999999999999998887654
No 99
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=94.84 E-value=0.12 Score=33.99 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=40.8
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCC------CHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAA------TDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~------~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
..+|..||+.++|.++.+++..++..+.... ..+-++.. +....--.++|.+|.+++....
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~---Fg~~~~r~~ny~~f~Q~lh~~~ 177 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLH---FGDIRKRHLNYAEFTQFLHEFQ 177 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHH---hhhHHHHhccHHHHHHHHHHHH
Confidence 4689999999999999999999998764322 22222222 2222344577777777776654
No 100
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=94.74 E-value=0.2 Score=32.35 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=31.2
Q ss_pred hccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 8 MDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 8 ~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
|-+++++.++.+++.++++.+ +.+-+..-+..++...+|.|+-.+|..++....
T Consensus 295 FG~rg~~kLs~deF~~F~e~L----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a 348 (489)
T KOG2643|consen 295 FGKRGNGKLSIDEFLKFQENL----QEEILELEFERFDKGDSGAISEVDFAELLLAYA 348 (489)
T ss_pred hccCCCccccHHHHHHHHHHH----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHc
Confidence 445666677777766666653 222223335556655556666666666666554
No 101
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.66 E-value=0.096 Score=32.49 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=43.9
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHc---CCCCC--HHHH-----------HHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCA---GFAAT--DDDI-----------KAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~---~~~~~--~~~~-----------~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
-.|...|.|++|.++-.||..++-.- -..++ +..+ ...++.+|.|.|..|+.++|++--...
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 35778899999999999998776531 11222 1122 124677899999999999999876543
No 102
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.21 E-value=0.051 Score=28.23 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=22.4
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNC 27 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~ 27 (76)
..++...|.+++|.++..||.-+|..
T Consensus 46 ~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 46 AQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 57889999999999999999988775
No 103
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=94.03 E-value=0.054 Score=28.69 Aligned_cols=33 Identities=9% Similarity=0.076 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 31 AATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 31 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
-+++++.+.++..+-.+..|.|.|.+|+.-+..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 368899999999999999999999999988763
No 104
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=93.85 E-value=0.2 Score=31.84 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCccHHHHH
Q 034995 29 GFAATDDDIKAMIRLGGEDENDGVSSPSFS 58 (76)
Q Consensus 29 ~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~ 58 (76)
|......++..+|+.+|.+++|.|+++||+
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 556667788999999999999999999996
No 105
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=93.62 E-value=0.13 Score=33.24 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=40.6
Q ss_pred cCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 10 KDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 10 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
...+|.++..++-.++-++...-+..-+.-+++-+|.+++|.++..|...++..
T Consensus 326 ~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 326 VKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred eeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHH
Confidence 345788888888888777766666666777888888888888887776665554
No 106
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.11 E-value=0.12 Score=34.60 Aligned_cols=54 Identities=19% Similarity=0.306 Sum_probs=36.5
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPS 56 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~e 56 (76)
.++|+.+|.+.+|.++..++-..|..+...-.-+.+.-+++.++.+++ ..+.++
T Consensus 558 ~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 558 ERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 467888888888888888887777766444444455666777776666 554444
No 107
>PF14658 EF-hand_9: EF-hand domain
Probab=92.88 E-value=0.16 Score=24.29 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.4
Q ss_pred HHHHhhhccCCC-CcccHHHHHHHHHH
Q 034995 2 EDVFKVMDKDGD-GRLSHDDLKSYMNC 27 (76)
Q Consensus 2 ~~~F~~~d~~~~-g~i~~~el~~~l~~ 27 (76)
+.+...+|+++. |.|+.+.+..+|+.
T Consensus 38 q~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 38 QDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 456778999998 99999999998874
No 108
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=92.63 E-value=0.55 Score=31.09 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=31.6
Q ss_pred ccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 9 DKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 9 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
|.-++|-|+.+|++.+-..+. .++......+..+|..++|.++++++..++..
T Consensus 84 D~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 84 DQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred hhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 455667777777764322222 22334455666777777777777777766654
No 109
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.26 E-value=0.98 Score=25.70 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=39.7
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc-------CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA-------GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSL 61 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 61 (76)
.++|..+++.+.+.++..|+..+++.- |...+.-|...++... .+.+|.+..++...++
T Consensus 99 e~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 99 EEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 578888888888899999998888752 3333344555444443 4678888877655443
No 110
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.72 E-value=0.11 Score=32.81 Aligned_cols=58 Identities=10% Similarity=0.121 Sum_probs=41.0
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH-HhhCCCCCCCccHHHHH
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMI-RLGGEDENDGVSSPSFS 58 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~-~~~d~~~~~~i~~~ef~ 58 (76)
++++|+.+|+.++|.|+.+-++.++..+....++.+.-.++ ...+..+-|.|-..+|+
T Consensus 311 ~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 311 LRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred HHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 37899999999999999999999999887666655443333 33455555555444443
No 111
>PLN02952 phosphoinositide phospholipase C
Probab=91.36 E-value=1.7 Score=29.33 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=43.2
Q ss_pred CCCcccHHHHHHHHHHcCC--CCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccC
Q 034995 12 GDGRLSHDDLKSYMNCAGF--AATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSS 67 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 67 (76)
+.|.++..++..+.+.+.. ..+..++..++..+.. +.+.++.++|..+|......
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e 69 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDE 69 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCC
Confidence 4689999999888776532 2367889999999965 44689999999999886643
No 112
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.25 E-value=1.1 Score=22.70 Aligned_cols=60 Identities=12% Similarity=0.244 Sum_probs=38.0
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc-------CC----CCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA-------GF----AATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
+-+|+.+ .|++|.++...|..+|+.+ |. ...+..++.++.... ....|+.+.|+..+...
T Consensus 6 RylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 6 RYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred HHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 4567777 7789999999998877752 22 236677888888763 45569999999988764
No 113
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=90.72 E-value=1.1 Score=21.54 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 034995 16 LSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSL 61 (76)
Q Consensus 16 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 61 (76)
++.+++..++...|..++..++.++++.-+..+--..+=+.+..++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 4567888899989999999999999988665444344433333333
No 114
>PLN02222 phosphoinositide phospholipase C 2
Probab=90.45 E-value=1.8 Score=29.18 Aligned_cols=61 Identities=18% Similarity=0.319 Sum_probs=44.7
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHhhCC-CCCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA-GF-AATDDDIKAMIRLGGE-DENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~l~~~ 64 (76)
..+|..+-. ++.++.++|..+|... +. ..+.+.+..++..+.. ...+.+++++|..+|...
T Consensus 28 ~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 28 KTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 467777753 4799999999999875 32 2456677888887632 246679999999999764
No 115
>PLN02230 phosphoinositide phospholipase C 4
Probab=90.10 E-value=2.5 Score=28.62 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=42.9
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhhC-------CCCCCCccHHHHHHHHHh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGF---AATDDDIKAMIRLGG-------EDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d-------~~~~~~i~~~ef~~~l~~ 63 (76)
..+|..+-.++ +.++.++|..+|..... ..+.+.+..++..+. .-+.+.++.++|..+|..
T Consensus 32 ~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 32 RDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 56788885444 89999999999998542 235566666665442 123456999999998865
No 116
>PLN02228 Phosphoinositide phospholipase C
Probab=88.96 E-value=3.4 Score=27.79 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=43.8
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc-CCC-CCHHHHHHHHHhhCCC----CCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA-GFA-ATDDDIKAMIRLGGED----ENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~-~~~-~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~l~~~ 64 (76)
..+|..+-. ++.++.++|..+|... +.. .+.+.+..++..+... ..+.++.++|..+|...
T Consensus 27 ~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 27 KRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 456766653 3589999999999875 322 4456678888887543 34679999999999754
No 117
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.89 E-value=0.14 Score=35.43 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=51.6
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
.+|...|.+.+|.|+..+....+...| ++...+...|...+..+.|.+++.+|...+....
T Consensus 287 ~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 287 KIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred HHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 578999999999999999999887744 6666788899999999999999998887776543
No 118
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.77 E-value=3.1 Score=29.25 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=45.7
Q ss_pred Hhhhc--cCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 5 FKVMD--KDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 5 F~~~d--~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
+..|+ +.+.|+|+...-+.++-.-| ++...+..+|...|.|+||+++-.||.-.|.-.
T Consensus 19 ~~qF~~Lkp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi 78 (1118)
T KOG1029|consen 19 DAQFGQLKPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLI 78 (1118)
T ss_pred HHHHhccCCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHH
Confidence 34444 45689999999999887756 444567889999999999999999998777643
No 119
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=88.62 E-value=1 Score=26.47 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=24.6
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 37 IKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 37 ~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
...+|+.||.+.||.|++-|...||...
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHh
Confidence 4668999999999999999999988764
No 120
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=88.55 E-value=1.4 Score=21.42 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=23.9
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHhhccC
Q 034995 36 DIKAMIRLGGEDENDGVSSPSFSNSLLIATSS 67 (76)
Q Consensus 36 ~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 67 (76)
++..++..+.. +.+.++.++|..+|....+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~ 31 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGE 31 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhcc
Confidence 46778888865 78889999999999876544
No 121
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=88.01 E-value=0.82 Score=22.10 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=35.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
+-.++..-|-.++... ++...+..+...|+.=..+.|+-++|+..++...+
T Consensus 6 sp~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CCcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4556666666666653 44445555555565556888999999999988765
No 122
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=87.61 E-value=2 Score=20.45 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=26.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
+--|+.+-++..+..+|..+++..++.+++.+
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55678888888888999999999888887665
No 123
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=87.28 E-value=0.83 Score=25.02 Aligned_cols=54 Identities=7% Similarity=0.083 Sum_probs=30.4
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC-------CCCCCCccHHHHHHHHHhhccC
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG-------EDENDGVSSPSFSNSLLIATSS 67 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d-------~~~~~~i~~~ef~~~l~~~~~~ 67 (76)
.-+.|+..||.++=..+.. +...++..+.++. -+..+.|+|++|..+|......
T Consensus 4 ~~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~ 64 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEV 64 (138)
T ss_dssp --S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-
T ss_pred ceeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcC
Confidence 3467888888776554322 2234566666652 2356689999999999987753
No 124
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=86.70 E-value=3.2 Score=21.88 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=38.2
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG 45 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 45 (76)
.+|..++..++...+..+++.+|...|.....+.++.++....
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 4677788888889999999999999999999999999998874
No 125
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=86.46 E-value=1.4 Score=20.86 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=31.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCC
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDE 48 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 48 (76)
.++-++..++...+...|..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4577899999999998899999999999998887544
No 126
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=86.44 E-value=4.6 Score=28.92 Aligned_cols=63 Identities=19% Similarity=0.303 Sum_probs=51.0
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcC----------CCCCHHHHHHHHHhhCCC----CCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAG----------FAATDDDIKAMIRLGGED----ENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~----------~~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~l~~~ 64 (76)
.++|..+..++.-+++..+|..+++.-. .......+..++..|..+ ..|.++-+.|+.++...
T Consensus 224 e~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 224 EEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred HHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 5789999999889999999999998631 134567788999998765 56799999999998773
No 127
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=85.94 E-value=2.7 Score=21.25 Aligned_cols=54 Identities=9% Similarity=0.136 Sum_probs=37.2
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 12 GDGRLSHDDLKSYMNCA--GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
-+|.++..|...+-..+ -+.++..+...++..+........++.+|...+....
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF 67 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 47899999976554432 1346677777777777655556678888888877643
No 128
>PRK00523 hypothetical protein; Provisional
Probab=85.91 E-value=2.8 Score=20.42 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
+-.|+.+-++..+..+|..+++..++.+++.+
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45677888888888889999998888887765
No 129
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=85.49 E-value=3.8 Score=21.53 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=40.8
Q ss_pred hhhccCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 6 KVMDKDGDGRLSHDDLKSYMNC----------AGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 6 ~~~d~~~~g~i~~~el~~~l~~----------~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
+.||+..+..|+.++++.+++. .|..++..-+-.++.+....+...++-. |+.-+.+..
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~-~L~qlIr~y 78 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD-FLTQIIRFY 78 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHh
Confidence 4689999999999999999885 2566777767777777655555555544 444444443
No 130
>PLN02223 phosphoinositide phospholipase C
Probab=85.24 E-value=5.6 Score=26.68 Aligned_cols=62 Identities=8% Similarity=-0.048 Sum_probs=43.1
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc----C-CCCCHHHHHHHHHhhCCC--------CCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA----G-FAATDDDIKAMIRLGGED--------ENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~----~-~~~~~~~~~~~~~~~d~~--------~~~~i~~~ef~~~l~~~ 64 (76)
+.+|..+- ++.|.++...+..+++-+ | ...+.++++.++..+-.. ..+.++.++|..+|...
T Consensus 19 ~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 19 LNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred HHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 56777774 667999999999988433 2 245566677777654322 23569999999999763
No 131
>PLN02952 phosphoinositide phospholipase C
Probab=85.16 E-value=8.2 Score=26.28 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=40.9
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc-CC-CCCHHHHHHHHHhhC-------CCCCCCccHHHHHHHHHh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA-GF-AATDDDIKAMIRLGG-------EDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~-~~-~~~~~~~~~~~~~~d-------~~~~~~i~~~ef~~~l~~ 63 (76)
..+|..+-. +.+.++.++|..+|... +. ..+.+.+..++..+- ..+...+++++|..+|..
T Consensus 41 ~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 41 KDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred HHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 456776654 34789999999999875 32 255566666655431 112346899999999974
No 132
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=84.91 E-value=3.3 Score=21.47 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=34.3
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC---CCCCCCccHHHHHHHHHhhcc
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG---EDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d---~~~~~~i~~~ef~~~l~~~~~ 66 (76)
+-|..+-. +|.++.+.|...+ |..-+.+-..+++.... .-..+.|+.++...++.....
T Consensus 34 ~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 34 KRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH-
T ss_pred HHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhc
Confidence 44555555 8899999988877 55556666655554432 123467888888887766544
No 133
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=84.70 E-value=2.8 Score=19.94 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=27.0
Q ss_pred hhhccCCCCcccHHHHHHHHHH----------cCCCCCHHHHHHHHHh
Q 034995 6 KVMDKDGDGRLSHDDLKSYMNC----------AGFAATDDDIKAMIRL 43 (76)
Q Consensus 6 ~~~d~~~~g~i~~~el~~~l~~----------~~~~~~~~~~~~~~~~ 43 (76)
+.||...+..|+.+++..+++. .|..++..-+-+++.+
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHH
Confidence 4689999999999999999885 2445555544444443
No 134
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=83.58 E-value=0.89 Score=21.93 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=32.2
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCC-------CCCCCccHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGE-------DENDGVSSPSFSN 59 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~~~i~~~ef~~ 59 (76)
..+|+.+ .++.+.|+..+|+..|-. ++++-++..+.. ...|..+|..|+.
T Consensus 9 ~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 9 EEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 5789999 778899999999987532 123444444322 1236688888864
No 135
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.92 E-value=8.4 Score=23.46 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=46.2
Q ss_pred hccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccCCHHHHhh
Q 034995 8 MDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSSSKSKLRN 74 (76)
Q Consensus 8 ~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~el~~ 74 (76)
.|++-+..|-.+-+..+++.+|..+.+-.+--+-=.+....-+..+.++|+.-+......+.+.|+.
T Consensus 74 ~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~ 140 (260)
T KOG3077|consen 74 KDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKLQQ 140 (260)
T ss_pred cCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHHHH
Confidence 3666667888888999999988777554333222233456677889999999887776666655554
No 136
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.92 E-value=3.3 Score=22.93 Aligned_cols=56 Identities=20% Similarity=0.375 Sum_probs=40.7
Q ss_pred CCCcccHHHHHHHHHH--cCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccC
Q 034995 12 GDGRLSHDDLKSYMNC--AGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSS 67 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~--~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 67 (76)
-+|.++..|...+... -.+.++.+++..++.....-+...+++-.|...+.+....
T Consensus 41 ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~ 98 (148)
T COG4103 41 ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDE 98 (148)
T ss_pred cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCH
Confidence 3677888886543222 2566888889999888776677788888898888876543
No 137
>PRK01844 hypothetical protein; Provisional
Probab=81.60 E-value=4.7 Score=19.66 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=25.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
+--|+.+-++..+..+|..+++..++.+++.+
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45677788888888889999988888887765
No 138
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=81.27 E-value=0.35 Score=28.25 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=42.0
Q ss_pred Hhhhcc-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 5 FKVMDK-DGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 5 F~~~d~-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
|..+|+ ..+|.+|..||.-+-.. .-+.+.=+..++.-.|.++|+.|+.+||-.++.-..
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap--~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gikq 252 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAP--LIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQ 252 (259)
T ss_pred eccccCCCccccccccccccccCC--cccHHhhchhhhhcccCCCCCceeHHHhhcccCcch
Confidence 555665 45899999998753322 223444466788889999999999999988775443
No 139
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=80.82 E-value=5.6 Score=20.04 Aligned_cols=53 Identities=8% Similarity=0.023 Sum_probs=40.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
+=..++..||..+.+..+.+++..++..++..+-.++-.-.+-++=..++...
T Consensus 11 Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 11 KLNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred HHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999999999888865555555555555555553
No 140
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=80.78 E-value=2.3 Score=15.62 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=7.5
Q ss_pred ccCCCCcccHHHHH
Q 034995 9 DKDGDGRLSHDDLK 22 (76)
Q Consensus 9 d~~~~g~i~~~el~ 22 (76)
|-+++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34556666666554
No 141
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=80.58 E-value=2.7 Score=18.32 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=15.2
Q ss_pred HHHhhhc-c-CCCCcccHHHHHHHHHH
Q 034995 3 DVFKVMD-K-DGDGRLSHDDLKSYMNC 27 (76)
Q Consensus 3 ~~F~~~d-~-~~~g~i~~~el~~~l~~ 27 (76)
.+|+.|- + .....++..||+.++..
T Consensus 10 ~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 10 DVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4566664 2 23467777777777654
No 142
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=79.43 E-value=7.2 Score=29.81 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=38.2
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHH--cCCCCCHHHHHHHHHhhCCCCCCCccHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNC--AGFAATDDDIKAMIRLGGEDENDGVSSPSF 57 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~--~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef 57 (76)
+++....||+.+|.|+..+...+|-. ...-.+.+++...++..+. +.-+|+-++.
T Consensus 2299 e~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2299 EEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred HHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHH
Confidence 45677889999999999998776654 2233555678778877776 4555655544
No 143
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=78.78 E-value=5.3 Score=18.61 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
+-.++.+|+...+..++..++..++..+|...
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 35678899999999998888888888877665
No 144
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.03 E-value=8.1 Score=18.75 Aligned_cols=32 Identities=13% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
+-.|+.+-++.++..+|..+++..++.+++..
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45677777787788888888888887777654
No 145
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.42 E-value=1.6 Score=32.72 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=45.5
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCC----CCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGF----AATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
.++...+|++..|.|+..++..+++.+.. ...... +-+-..+...+++.|++.+-+.++.+..
T Consensus 1420 ~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r~ 1486 (1592)
T KOG2301|consen 1420 YEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKRV 1486 (1592)
T ss_pred HHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHHh
Confidence 46778999999999999999999998633 222222 2222234556888999999988888743
No 146
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=74.06 E-value=16 Score=24.48 Aligned_cols=60 Identities=10% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh---C-----CCCCCCccHHHHHHHHHh
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG---G-----EDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~---d-----~~~~~~i~~~ef~~~l~~ 63 (76)
+|..|-..+.+.++.--|..+|+.+|+.-++.-++.||..+ + ....+.++-+-|..++..
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 46666666679999999999999999988887777776543 3 233446677777666543
No 147
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=73.02 E-value=11 Score=21.63 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=22.6
Q ss_pred ccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 9 DKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 9 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
..+.+|.++.++|...+..-+...+.+++..++..-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 457789999999988888777778888888887653
No 148
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=71.91 E-value=13 Score=20.48 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=14.3
Q ss_pred HHHHHcCCCCCHHHHHHHH
Q 034995 23 SYMNCAGFAATDDDIKAMI 41 (76)
Q Consensus 23 ~~l~~~~~~~~~~~~~~~~ 41 (76)
.-..++|..++++++..++
T Consensus 97 ~e~eklGi~Vs~~El~d~l 115 (145)
T PF13623_consen 97 QEFEKLGITVSDDELQDML 115 (145)
T ss_pred HHHHHhCCccCHHHHHHHH
Confidence 3445578888988888877
No 149
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=71.87 E-value=13 Score=19.72 Aligned_cols=42 Identities=10% Similarity=0.197 Sum_probs=33.7
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG 45 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 45 (76)
+|...-..++..++..++..+|...|.......+..+++.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 344555667778999999999999999888888888887774
No 150
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=71.54 E-value=6.8 Score=19.01 Aligned_cols=16 Identities=19% Similarity=0.586 Sum_probs=12.7
Q ss_pred CCCcccHHHHHHHHHH
Q 034995 12 GDGRLSHDDLKSYMNC 27 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~ 27 (76)
..|++..+|+..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 4688888888888765
No 151
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=71.51 E-value=5.9 Score=21.31 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=12.6
Q ss_pred HhhhccCCCCcccHHHHHHHHHH
Q 034995 5 FKVMDKDGDGRLSHDDLKSYMNC 27 (76)
Q Consensus 5 F~~~d~~~~g~i~~~el~~~l~~ 27 (76)
...||++++|.|+.-.++-++-.
T Consensus 103 l~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 103 LNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHhCCCCCCeeehhHHHHHHHH
Confidence 45667777777777776665543
No 152
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=71.22 E-value=3.2 Score=23.94 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=33.5
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMI 41 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 41 (76)
++++|..||+++--..+.+++..+|...|.--+...+...+
T Consensus 57 freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 57 FREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred HHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 36899999999999999999999999888776666665544
No 153
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=71.01 E-value=23 Score=22.21 Aligned_cols=12 Identities=8% Similarity=0.271 Sum_probs=4.9
Q ss_pred CCHHHHHHHHHh
Q 034995 32 ATDDDIKAMIRL 43 (76)
Q Consensus 32 ~~~~~~~~~~~~ 43 (76)
++.++.-++++.
T Consensus 303 itReeal~~v~~ 314 (343)
T TIGR03573 303 ITREEAIELVKE 314 (343)
T ss_pred CCHHHHHHHHHH
Confidence 334444444444
No 154
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=71.00 E-value=5.1 Score=25.57 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=42.2
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc---CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA---GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
+..|..+=.+.++......+...-..+ -.++=..++-.||..+|.+.|+.++-.|...+.....
T Consensus 214 ~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldkn 280 (434)
T KOG3555|consen 214 RDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKN 280 (434)
T ss_pred HHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCc
Confidence 456666666666655555555442221 1234456788899999999999999998877665433
No 155
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=70.72 E-value=9.7 Score=17.79 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 29 GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 29 ~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
|..++.+++..++..+-.+.=..+....|+..++-
T Consensus 12 g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~~ 46 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAILDGEVSDAQIAAFLMALRM 46 (66)
T ss_dssp T----HHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 66777788877777764222223334556555543
No 156
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=69.95 E-value=28 Score=24.50 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=46.4
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
...|+..+..+++.+...++..+...++..+ ++..++..+..+ .+.++..+++.++....
T Consensus 175 ~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 175 RRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred HHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhc
Confidence 4567777888899999999998888766555 677788777654 78888888888887653
No 157
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=69.63 E-value=6.8 Score=15.84 Aligned_cols=17 Identities=6% Similarity=0.075 Sum_probs=13.2
Q ss_pred CCCccHHHHHHHHHhhc
Q 034995 49 NDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 49 ~~~i~~~ef~~~l~~~~ 65 (76)
.|.|++++++.+..+..
T Consensus 2 ~~~i~~~~~~d~a~rv~ 18 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVN 18 (33)
T ss_pred CceecHHHHHHHHHHHH
Confidence 57788888888887643
No 158
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=69.48 E-value=8.2 Score=24.64 Aligned_cols=61 Identities=15% Similarity=0.100 Sum_probs=43.3
Q ss_pred HhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 5 FKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 5 F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
...+|+.+.|.++..-++-++..+....-.+.++-++... .+++|.+.+..|..++....+
T Consensus 116 LaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evls 176 (434)
T KOG4301|consen 116 LAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVLS 176 (434)
T ss_pred HhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHc
Confidence 3467899999999998888887764444445566566555 467888877777777776543
No 159
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=69.36 E-value=13 Score=25.57 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccC
Q 034995 34 DDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSS 67 (76)
Q Consensus 34 ~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 67 (76)
.--+..+|...|.+.+|.++|.+++..+.....+
T Consensus 554 ~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~ 587 (671)
T KOG4347|consen 554 LIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG 587 (671)
T ss_pred HHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh
Confidence 3445778999999999999999999999876543
No 160
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.73 E-value=5.2 Score=26.83 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=24.2
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHc
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~ 28 (76)
+..++...|-+.+|.++..||+.++...
T Consensus 267 LshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 267 LSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHhhcccCccccccHHHHHhhHhhe
Confidence 3568889999999999999999988764
No 161
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.12 E-value=13 Score=24.31 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHH
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSN 59 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 59 (76)
+|+|+...-+..|.. -.+++..+-++|+..|.+.||.++-+||.-
T Consensus 457 ~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 457 NGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred CceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 677777776666654 456677789999999999999999999953
No 162
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.27 E-value=3.8 Score=28.87 Aligned_cols=62 Identities=19% Similarity=0.396 Sum_probs=50.5
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
...|+..|..+.|.|+..+-..++..-| +....+-++|...+..+.|.++..+|...++...
T Consensus 14 ~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva 75 (847)
T KOG0998|consen 14 DQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVA 75 (847)
T ss_pred HHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhh
Confidence 3578899999999999999888777544 5556677788888888889999999998887643
No 163
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=67.22 E-value=21 Score=20.42 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=26.5
Q ss_pred ccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 034995 9 DKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRL 43 (76)
Q Consensus 9 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 43 (76)
..|.+|.++.++|...++.-+...+.+.+.++...
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 34778999999998888765566788887777644
No 164
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=66.75 E-value=12 Score=17.46 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=20.3
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAM 40 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~ 40 (76)
.|+.++|..+|+...-.++.+++.+.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47889999999988888888877654
No 165
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=65.20 E-value=9.4 Score=15.57 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=12.6
Q ss_pred cccHHHHHHHHHHcCCCCC
Q 034995 15 RLSHDDLKSYMNCAGFAAT 33 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~ 33 (76)
.++..||+..++..|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 4567788888887776543
No 166
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.79 E-value=18 Score=18.36 Aligned_cols=49 Identities=10% Similarity=0.130 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
.|.++.+....+..+.+..-+...++.++.... .+.+ -|..|+..++..
T Consensus 31 ~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~--aF~~Fl~aLreT 79 (88)
T cd08819 31 QGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEG--WFSKFLQALRET 79 (88)
T ss_pred cCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc--HHHHHHHHHHHc
Confidence 467777777766665555566778888888876 4454 478999988754
No 167
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=63.67 E-value=16 Score=24.94 Aligned_cols=64 Identities=20% Similarity=0.390 Sum_probs=41.4
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHH-HcCCCCCHHHHHHH---HHhhCC--CCCCCccHHHHHHHHHhh
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMN-CAGFAATDDDIKAM---IRLGGE--DENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~-~~~~~~~~~~~~~~---~~~~d~--~~~~~i~~~ef~~~l~~~ 64 (76)
+.++|...|.|.+|.++-.|+..+=+ .++.++...++..+ +...-. =.+..++...|+.+-...
T Consensus 197 l~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lf 266 (625)
T KOG1707|consen 197 LKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLF 266 (625)
T ss_pred HHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHH
Confidence 46899999999999999999876533 35666665544333 333211 234456777777665543
No 168
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=63.11 E-value=10 Score=15.32 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=13.6
Q ss_pred cccHHHHHHHHHHcCCCCC
Q 034995 15 RLSHDDLKSYMNCAGFAAT 33 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~ 33 (76)
.++..+|+..++..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4667888888887776543
No 169
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=62.37 E-value=22 Score=18.93 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Q 034995 18 HDDLKSYMNCAGFAATDDDIKAMIR 42 (76)
Q Consensus 18 ~~el~~~l~~~~~~~~~~~~~~~~~ 42 (76)
..|++.++..-+..++.+++++++.
T Consensus 82 ~~ElRsIla~e~~~~s~E~l~~Ild 106 (114)
T COG1460 82 PDELRSILAKERVMLSDEELDKILD 106 (114)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHH
Confidence 3455555555555555555555443
No 170
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=60.60 E-value=18 Score=17.76 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCcc
Q 034995 19 DDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVS 53 (76)
Q Consensus 19 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~ 53 (76)
-.+..++..+|.+-+.+.+..++.......+-.+.
T Consensus 6 h~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~~~L~ 40 (74)
T PF10982_consen 6 HTLSNLFAQLGLDSSDEAIEAFIETHQLPADVHLA 40 (74)
T ss_dssp THHHHHHHHHTS---HHHHHHHHHHS---TTS-ST
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCccc
Confidence 45778889999999999999999988766665554
No 171
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=59.76 E-value=36 Score=20.39 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=30.7
Q ss_pred cCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 10 KDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 10 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
.+++|.++...|...+.++...++..|+..+-+..
T Consensus 162 G~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred cCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 46889999999999999999999999998876654
No 172
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=58.89 E-value=17 Score=17.76 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=20.4
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG 45 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 45 (76)
..|+|+..++..+|-. ...+.+.+..++..+.
T Consensus 18 ~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 18 KKGYLTYDEINDALPE--DDLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHSS-BHHHHHHH-S---S---HHHHHHHHHHHH
T ss_pred hcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHH
Confidence 4689999999998874 3466677888877764
No 173
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=58.55 E-value=26 Score=18.44 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=40.0
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
+|..+-..++..++.+++..++...|.......+..+++.+.. .+..+.+.-...
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhHh
Confidence 4555566777789999999999999988888777777777642 445666554443
No 174
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=57.21 E-value=4.8 Score=21.35 Aligned_cols=51 Identities=14% Similarity=0.323 Sum_probs=24.5
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 034995 12 GDGRLSHDDLKSYMNCA--GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLL 62 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 62 (76)
-+|.++..|...+...+ ....+..+...++..++......+++.+|+..+.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 88 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELR 88 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 37888888876655543 2223334445555444433333455555554443
No 175
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=56.43 E-value=25 Score=17.56 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=35.9
Q ss_pred CCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 13 DGRLSHDDLKSYMNC-AGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 13 ~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
.|.-+..--..+|.. -|-.++++-++.+.+.+.......|+|+|.+.+....
T Consensus 26 ~~~HPl~~Q~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~~ 78 (82)
T PF11020_consen 26 PDHHPLQFQATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALGV 78 (82)
T ss_pred CCCCchHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344444444556665 4777888777777777777667779999998876554
No 176
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=56.21 E-value=16 Score=23.13 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 17 SHDDLKSYMNCA-GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 17 ~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
|...|..+-... |+.++.-..+.+|...|.|+||.++-.+.-.++..-
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkE 273 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKE 273 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHH
Confidence 345565554443 666666666778888999999999988888777653
No 177
>PF14294 DUF4372: Domain of unknown function (DUF4372)
Probab=55.26 E-value=25 Score=17.18 Aligned_cols=44 Identities=7% Similarity=0.125 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHhhCCC--CCCCccHHHHHHHHHhhccCCH--HHHhh
Q 034995 31 AATDDDIKAMIRLGGED--ENDGVSSPSFSNSLLIATSSSK--SKLRN 74 (76)
Q Consensus 31 ~~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~l~~~~~~~~--~el~~ 74 (76)
.++..+++.+.+.+..+ ....=+|+-|+.|+.....+.+ ++|..
T Consensus 13 ~i~~~~f~~~v~k~~~d~~~k~f~~~~ql~~mlfaQL~~~~SLRdI~~ 60 (76)
T PF14294_consen 13 FIPRHEFERIVKKYGGDRYVKKFTCWDQLVAMLFAQLTGRESLRDIED 60 (76)
T ss_pred HCCHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHcccCcHHHHHH
Confidence 36677788888887643 2234468889998888776543 45543
No 178
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=54.73 E-value=27 Score=17.45 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=20.3
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 16 LSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 16 i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
|+..++..+.+...+.++++++..+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 46677887777777888888776654443
No 179
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.32 E-value=28 Score=23.95 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=43.8
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHc---C-----CCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCA---G-----FAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~---~-----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
+-.|..+|. .+|.++.+++..++... + ...+.+....++...+.+..+.+.++++..++...
T Consensus 21 ~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 21 QTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQI 90 (646)
T ss_pred HHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHhc
Confidence 457788888 89999999998877652 1 22333444556777777778888888887777654
No 180
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=53.92 E-value=32 Score=19.62 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=14.9
Q ss_pred cCCCCcccHHHHHHHHHHcCCC
Q 034995 10 KDGDGRLSHDDLKSYMNCAGFA 31 (76)
Q Consensus 10 ~~~~g~i~~~el~~~l~~~~~~ 31 (76)
.||+|++..-=+..++...|..
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCCC
Confidence 4677777776666666666654
No 181
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=53.63 E-value=9.9 Score=24.20 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.6
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNC 27 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~ 27 (76)
+++|...|-|++..|+..|+...|..
T Consensus 373 rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 373 RKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred hhcchhcccCCCceecHHHHhhhhcc
Confidence 56788999999999999999887754
No 182
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=53.62 E-value=41 Score=19.28 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCc--cHHHHHHHHHhhc
Q 034995 16 LSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGV--SSPSFSNSLLIAT 65 (76)
Q Consensus 16 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i--~~~ef~~~l~~~~ 65 (76)
+..++...-|++.|.+.+..+.+..+..+-.++.|.+ ++...-++|....
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~y~~~~~iknlm~~yd 53 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAMYTNIQGIKNLMSQYD 53 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCceeehHHHHHHHHHhcC
Confidence 4566777778888888888888877777766666654 4555566666544
No 183
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.59 E-value=12 Score=21.56 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=39.4
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh----CCCCCCCccHHHHHHHH
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG----GEDENDGVSSPSFSNSL 61 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~----d~~~~~~i~~~ef~~~l 61 (76)
++++|.-||+..--..+-.++..++..-+.-.+...+..++... +.... +|.+|+.-.
T Consensus 55 fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~e---sf~~ylW~f 116 (179)
T TIGR00624 55 YRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQN---DLVEFLWSF 116 (179)
T ss_pred HHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHc---cHHHHHHhc
Confidence 36789999999888899999998888777666666665544321 11111 677777544
No 184
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=52.12 E-value=29 Score=17.08 Aligned_cols=47 Identities=6% Similarity=0.104 Sum_probs=33.8
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
+.|.|+.++...+.. .+.+.+.+++++.... ..|...|.-|...+..
T Consensus 26 ~~~Vit~e~~~~I~a---~~T~~~kar~Lld~l~--~kG~~A~~~F~~~L~e 72 (82)
T cd08330 26 GKKVITQEQYSEVRA---EKTNQEKMRKLFSFVR--SWGASCKDIFYQILRE 72 (82)
T ss_pred HCCCCCHHHHHHHHc---CCCcHHHHHHHHHHHH--ccCHHHHHHHHHHHHH
Confidence 357788887666554 3455677888887764 4677889999998854
No 185
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=52.04 E-value=40 Score=18.65 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=24.5
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 034995 16 LSHDDLKSYMNCAGFAATDDDIKAMIRLGGE 46 (76)
Q Consensus 16 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 46 (76)
.+.++++.+...+..+++++++...+..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 3677788777767778899999999888764
No 186
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=50.71 E-value=30 Score=17.27 Aligned_cols=37 Identities=8% Similarity=0.083 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccCC
Q 034995 32 ATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSSS 68 (76)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~ 68 (76)
+++.+...+....+.-..|+++.+.|+..+....+.-
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~aL~elLnt~ 52 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMALFELLNTH 52 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccH
Confidence 5566666655555555688899999998887766543
No 187
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=49.93 E-value=52 Score=19.64 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=30.2
Q ss_pred cHHHHHHHHH----HcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 034995 17 SHDDLKSYMN----CAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLL 62 (76)
Q Consensus 17 ~~~el~~~l~----~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 62 (76)
+.++++.++. ..+..+++.++..+...+..=.+-.++|.+|..-+.
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~ 222 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLN 222 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6677666555 357778888887776666544455577777766553
No 188
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=49.85 E-value=33 Score=17.05 Aligned_cols=20 Identities=5% Similarity=0.054 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCCCCHHHHH
Q 034995 19 DDLKSYMNCAGFAATDDDIK 38 (76)
Q Consensus 19 ~el~~~l~~~~~~~~~~~~~ 38 (76)
-|+..+|+++|..++.++..
T Consensus 20 vEIL~ALrkLge~Ls~eE~~ 39 (78)
T PF06384_consen 20 VEILTALRKLGEKLSPEEEA 39 (78)
T ss_dssp HHHHHHHHHTT----HHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHH
Confidence 35677899999999998754
No 189
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=49.36 E-value=37 Score=17.51 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 16 LSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 16 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
++..+..-++..+...++++++.++...+...+...++-.+.-..+.+...
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~ 70 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTD 70 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCS
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc
Confidence 667777777777888899999988887775555544455566566655543
No 190
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=47.72 E-value=28 Score=23.45 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=37.3
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
..|..+-+.+...++..+++.++..+|.....++--..|...+.+.. .+.|..++..+...+
T Consensus 489 ~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~sel 550 (612)
T COG5069 489 ALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVS-GVFYLDVLKGIHSEL 550 (612)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccc-cchHHHHHHHHhhhh
Confidence 45777777778889999999999888766544332223333222211 355666666555443
No 191
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=47.38 E-value=26 Score=15.19 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHH
Q 034995 18 HDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNS 60 (76)
Q Consensus 18 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 60 (76)
.+|...+|..+| .++.++...+..... ...++.++.+..
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 356777787777 555677777777643 333556665544
No 192
>PRK09462 fur ferric uptake regulator; Provisional
Probab=47.00 E-value=47 Score=18.01 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=17.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIR 42 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 42 (76)
..+.++.+++...++..+..++..-+...+.
T Consensus 30 ~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~ 60 (148)
T PRK09462 30 DNHHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (148)
T ss_pred CCCCCCHHHHHHHHHhhCCCCCHHHHHHHHH
Confidence 3456666666666666555555555544443
No 193
>PRK00441 argR arginine repressor; Provisional
Probab=46.93 E-value=50 Score=18.28 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=31.6
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC----CCCCCC
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG----EDENDG 51 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d----~~~~~~ 51 (76)
..+..+..||...|...|+..++.-+..-+..+. .+++|.
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~lvKv~~~~G~ 58 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELKLIKVLSNDGK 58 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcCcEEeECCCCC
Confidence 3677889999999999999999998888776654 245564
No 194
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=46.89 E-value=11 Score=21.73 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=31.4
Q ss_pred CHHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 034995 1 MEDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIR 42 (76)
Q Consensus 1 ~~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 42 (76)
++++|..||+..--..+-+++..++..-+.--+...+++++.
T Consensus 56 fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 56 YRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHH
Confidence 367899999998888889999988887666556655555443
No 195
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=46.83 E-value=45 Score=17.70 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=31.1
Q ss_pred HhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 034995 5 FKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG 45 (76)
Q Consensus 5 F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 45 (76)
|.+.-..++..++.+++..+|...|..+....+..+++.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 44444566777999999999999998888777777777663
No 196
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=46.59 E-value=38 Score=16.87 Aligned_cols=30 Identities=7% Similarity=0.250 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
.|+.+++..+.+...+.++++++..+...+
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 367888888888778888888876654443
No 197
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=46.58 E-value=25 Score=17.24 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=14.8
Q ss_pred CCCCCCccHHHHHHHHHh
Q 034995 46 EDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 46 ~~~~~~i~~~ef~~~l~~ 63 (76)
.+..|.|+++.|+....-
T Consensus 13 ~n~~G~iTl~gfLa~W~l 30 (76)
T PF08355_consen 13 TNEKGWITLQGFLAQWSL 30 (76)
T ss_pred EcCCCcCcHHHHHHHHHH
Confidence 477899999999987754
No 198
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=45.87 E-value=19 Score=19.50 Aligned_cols=60 Identities=12% Similarity=0.173 Sum_probs=30.1
Q ss_pred hhhccCCCCcccHHHHHHHHHHcCCC----------------CCHHHHH----H-HHHhhCCCCCC-CccHHHHHHHHHh
Q 034995 6 KVMDKDGDGRLSHDDLKSYMNCAGFA----------------ATDDDIK----A-MIRLGGEDEND-GVSSPSFSNSLLI 63 (76)
Q Consensus 6 ~~~d~~~~g~i~~~el~~~l~~~~~~----------------~~~~~~~----~-~~~~~d~~~~~-~i~~~ef~~~l~~ 63 (76)
+-.+-.+..+|...+|+.++..+|+. .+..++. . +...+..+-.- ..+.+++..++..
T Consensus 9 RGINVGG~nki~MaeLr~~l~~~Gf~~V~Tyi~SGNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~vrs~~el~~i~~~ 88 (137)
T PF08002_consen 9 RGINVGGKNKIKMAELREALEDLGFTNVRTYIQSGNVVFESDRDPAELAAKIEKALEERFGFDVPVIVRSAEELRAIIAA 88 (137)
T ss_dssp SS-SBTTBS---HHHHHHHHHHCT-EEEEEETTTTEEEEEESS-HHHHHHHHHHHHHHH-TT---EEEEEHHHHHHHHTT
T ss_pred cceecCCCCcccHHHHHHHHHHcCCCCceEEEeeCCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEEeeHHHHHHHHHH
Confidence 44556677889999999999998762 2233332 2 33344443333 3367777777766
Q ss_pred hc
Q 034995 64 AT 65 (76)
Q Consensus 64 ~~ 65 (76)
.+
T Consensus 89 nP 90 (137)
T PF08002_consen 89 NP 90 (137)
T ss_dssp --
T ss_pred CC
Confidence 43
No 199
>PHA02105 hypothetical protein
Probab=45.80 E-value=34 Score=16.01 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=29.3
Q ss_pred cccHHHHHHHHHHc---CCCCCHHHHHHHHHhhCCCCCC--CccHHHHHHHHHh
Q 034995 15 RLSHDDLKSYMNCA---GFAATDDDIKAMIRLGGEDEND--GVSSPSFSNSLLI 63 (76)
Q Consensus 15 ~i~~~el~~~l~~~---~~~~~~~~~~~~~~~~d~~~~~--~i~~~ef~~~l~~ 63 (76)
+++.+++..++..- ..++..+.++.+-..+....-. .++|+||-.+|--
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ 57 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPF 57 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccc
Confidence 46778888877652 3345555555554445443333 5689998877643
No 200
>PRK09389 (R)-citramalate synthase; Provisional
Probab=45.76 E-value=72 Score=21.27 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhCC--CCCCCccHHHHHHHHHhhc
Q 034995 19 DDLKSYMNCAGFAATDDDIKAMIRLGGE--DENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 19 ~el~~~l~~~~~~~~~~~~~~~~~~~d~--~~~~~i~~~ef~~~l~~~~ 65 (76)
.-+...++.+|..++++++..++..+-. +....++-+++..++....
T Consensus 321 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~ 369 (488)
T PRK09389 321 AALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVL 369 (488)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Confidence 3456677888999998888887766532 3345699999888886654
No 201
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=45.27 E-value=38 Score=19.18 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=33.9
Q ss_pred HHHhhhccCCCC-----cccHHHHHHHHHHc----CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 3 DVFKVMDKDGDG-----RLSHDDLKSYMNCA----GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 3 ~~F~~~d~~~~g-----~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
+.|+.|-.=++. .++...+..++... |..++.-.+.-.+..+-...-..++|++|...|..
T Consensus 16 ~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~e 85 (180)
T KOG4070|consen 16 ESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEE 85 (180)
T ss_pred HHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHH
Confidence 445555433322 23444455666543 33444444555566665556668999999666654
No 202
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=44.97 E-value=67 Score=19.22 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=35.4
Q ss_pred CCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccCCH
Q 034995 12 GDGRLSHDDLKSYMNC-AGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSSSK 69 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~ 69 (76)
....|+..+++.-|.. +|..-...+ ..++..|- .|.++-+||-..+....+...
T Consensus 5 ~~~Ridl~~lk~~l~~~LG~~~~~~Y-~~~l~~fl---~~klsk~Efd~~~~~~L~~~~ 59 (252)
T PF12767_consen 5 QNSRIDLEELKSQLQKRLGPDRWKKY-FQSLKRFL---SGKLSKEEFDKECRRILGREN 59 (252)
T ss_pred cccccCHHHHHHHHHHHHChHHHHHH-HHHHHHHH---HhccCHHHHHHHHHHHhChhH
Confidence 4678888888776664 453333333 33444443 578999999999888775543
No 203
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=44.38 E-value=48 Score=17.39 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=7.6
Q ss_pred CCCHHHHHHHHHhh
Q 034995 31 AATDDDIKAMIRLG 44 (76)
Q Consensus 31 ~~~~~~~~~~~~~~ 44 (76)
+-+.++++.++...
T Consensus 78 P~~~dElrai~~~~ 91 (112)
T PRK14981 78 PETRDELRAIFAKE 91 (112)
T ss_pred CCCHHHHHHHHHHh
Confidence 34455666666544
No 204
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=44.17 E-value=18 Score=18.17 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=12.4
Q ss_pred CCCcccHHHHHHHHHHc
Q 034995 12 GDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~ 28 (76)
-+|.++..|...+.+.+
T Consensus 15 aDG~v~~~E~~~i~~~l 31 (111)
T cd07176 15 ADGDIDDAELQAIEALL 31 (111)
T ss_pred hccCCCHHHHHHHHHHH
Confidence 47888888877666654
No 205
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=44.14 E-value=9.9 Score=21.81 Aligned_cols=40 Identities=20% Similarity=0.438 Sum_probs=28.2
Q ss_pred HHHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 034995 2 EDVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMI 41 (76)
Q Consensus 2 ~~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 41 (76)
+++|.-||++.--..+.+++..++..-+.-.+...+..++
T Consensus 52 r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi 91 (179)
T PF03352_consen 52 REAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVI 91 (179)
T ss_dssp HHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHH
T ss_pred HHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHH
Confidence 6789999998888888999998888766666666665544
No 206
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=43.80 E-value=56 Score=17.97 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 034995 11 DGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG 45 (76)
Q Consensus 11 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 45 (76)
..+...+.+|+...|+..|..++..-+-..++...
T Consensus 12 ~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 12 TEEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 34567889999999999999999998888777764
No 207
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=43.21 E-value=32 Score=14.98 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=11.1
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHH
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAMI 41 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~~ 41 (76)
..+..++..+...+| ++..+|..+|
T Consensus 24 ~P~~~~~~~la~~~~--l~~~qV~~WF 48 (59)
T cd00086 24 YPSREEREELAKELG--LTERQVKIWF 48 (59)
T ss_pred CCCHHHHHHHHHHHC--cCHHHHHHHH
Confidence 444444444444443 3334444444
No 208
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=43.02 E-value=42 Score=16.34 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHhhCC-CCCCCccHHHHHHHH
Q 034995 17 SHDDLKSYMNCAGFAATDDDIKAMIRLGGE-DENDGVSSPSFSNSL 61 (76)
Q Consensus 17 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~l 61 (76)
...+|...|. |...+.+.+.+.+...+. +.-+.++-++++.++
T Consensus 43 ~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 4667777664 788899999998888743 234568888887764
No 209
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=42.60 E-value=78 Score=19.28 Aligned_cols=54 Identities=9% Similarity=0.085 Sum_probs=30.3
Q ss_pred CCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 11 DGDGRLSHDDLKSYMNCA--GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 11 ~~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
.-+|.++..|+. +.+.+ ...++.++-+.....+........++.+|+..+....
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~ 122 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVC 122 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHh
Confidence 348899999986 33332 1334555422233333322333477888888887654
No 210
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=42.56 E-value=36 Score=17.78 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=19.7
Q ss_pred HcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 27 CAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
..|...++.++...+..+.... .++.++|...+..
T Consensus 62 ~~gI~vsd~evd~~i~~ia~~n--~ls~~ql~~~L~~ 96 (118)
T PF09312_consen 62 RLGIKVSDEEVDEAIANIAKQN--NLSVEQLRQQLEQ 96 (118)
T ss_dssp HCT----HHHHHHHHHHHHHHT--T--HHHHHHHCHH
T ss_pred HcCCCCCHHHHHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 4588899999988877764322 2577777777765
No 211
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=42.03 E-value=30 Score=16.48 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=4.5
Q ss_pred CCCCCHHHHHHHH
Q 034995 29 GFAATDDDIKAMI 41 (76)
Q Consensus 29 ~~~~~~~~~~~~~ 41 (76)
|...+++-+..+|
T Consensus 57 G~~~~ediLd~IF 69 (73)
T PF12631_consen 57 GEVVTEDILDNIF 69 (73)
T ss_dssp TSS--HHHHHHHH
T ss_pred CCCChHHHHHHHH
Confidence 4334444444443
No 212
>PRK08181 transposase; Validated
Probab=41.82 E-value=81 Score=19.23 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=33.9
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
....|+-..+...++.+..+--.+.+....... ..+..+|.+|+..+...-
T Consensus 3 ~~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a---~~~~~~~~e~L~~ll~~E 53 (269)
T PRK08181 3 TTNVIDEARLGLLLNELRLPTIKTLWPQFAEQA---DKEGWPAARFLAAIAEHE 53 (269)
T ss_pred CCCcccHHHHHHHHHHcCchHHHHHHHHHHHHH---hhcCCCHHHHHHHHHHHH
Confidence 346777888888899887664334444444332 345589999999987643
No 213
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=41.55 E-value=20 Score=25.44 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=38.7
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCc
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGV 52 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i 52 (76)
....||+..+|.|..-+|+-.+-.+.....++.++-+|+....++...+
T Consensus 475 llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq~~ 523 (966)
T KOG4286|consen 475 LLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQCD 523 (966)
T ss_pred HHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhhHH
Confidence 3568999999999999999887777767777777889988876555443
No 214
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=41.28 E-value=34 Score=19.94 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=18.6
Q ss_pred HhhhccCCCCcccHHHHHHHHHH
Q 034995 5 FKVMDKDGDGRLSHDDLKSYMNC 27 (76)
Q Consensus 5 F~~~d~~~~g~i~~~el~~~l~~ 27 (76)
..-+|.+++|.++.+|+..+...
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~ 78 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKE 78 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHH
Confidence 44678999999999998877654
No 215
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=41.10 E-value=35 Score=14.78 Aligned_cols=20 Identities=15% Similarity=0.420 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHcCCCCCHHH
Q 034995 17 SHDDLKSYMNCAGFAATDDD 36 (76)
Q Consensus 17 ~~~el~~~l~~~~~~~~~~~ 36 (76)
+.+++..+.+..|+..+.++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~e 47 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEE 47 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHH
Confidence 44555555555555555544
No 216
>COG5562 Phage envelope protein [General function prediction only]
Probab=40.79 E-value=27 Score=19.22 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=16.5
Q ss_pred hCCCCCCCccHHHHHHHHHhh
Q 034995 44 GGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 44 ~d~~~~~~i~~~ef~~~l~~~ 64 (76)
...+..|..+|++|+.-+.+.
T Consensus 81 l~~~qsGqttF~ef~~~la~A 101 (137)
T COG5562 81 LRRHQSGQTTFEEFCSALAEA 101 (137)
T ss_pred HHHHhcCCccHHHHHHHHHhC
Confidence 344578999999999988753
No 217
>PRK07394 hypothetical protein; Provisional
Probab=40.53 E-value=95 Score=19.68 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=7.7
Q ss_pred CCCHHHHHHHHHhh
Q 034995 31 AATDDDIKAMIRLG 44 (76)
Q Consensus 31 ~~~~~~~~~~~~~~ 44 (76)
+++.+|....+..+
T Consensus 21 ~Lt~eea~~~~~~i 34 (342)
T PRK07394 21 DLTREEAADALKLM 34 (342)
T ss_pred CcCHHHHHHHHHHH
Confidence 45555555555554
No 218
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=40.13 E-value=52 Score=17.62 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=18.9
Q ss_pred HHHcCCCCCHHHHHHHHHhhCC-CCCCCccHHHHHHHHHhh
Q 034995 25 MNCAGFAATDDDIKAMIRLGGE-DENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~l~~~ 64 (76)
-+..|..+++.+++..+..... ..+|..+-+.|..++...
T Consensus 93 A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~~ 133 (154)
T PF13624_consen 93 AKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQQ 133 (154)
T ss_dssp HHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH--
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 3446889999999887776311 113666777787777653
No 219
>PF03963 FlgD: Flagellar hook capping protein - N-terminal region; InterPro: IPR005648 FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum []. It appears to act as a hook-capping protein to enable assembly of hook protein subunits [].
Probab=39.95 E-value=45 Score=16.52 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=13.0
Q ss_pred CCCCCccHHHHHHHHHhhcc
Q 034995 47 DENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 47 ~~~~~i~~~ef~~~l~~~~~ 66 (76)
.+.+.++.++|+.+|.....
T Consensus 26 ~~~~~l~~d~FLkLLvaQLq 45 (81)
T PF03963_consen 26 SSNSSLDQDDFLKLLVAQLQ 45 (81)
T ss_pred CCcccccHHHHHHHHHHHHh
Confidence 34556777777777776543
No 220
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=39.30 E-value=56 Score=16.67 Aligned_cols=47 Identities=11% Similarity=0.124 Sum_probs=33.8
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
++|.++.++...+-. .+.+.+.+.+++.... ..|.-.|..|+..+..
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp--~RG~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDILP--SRGPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHHH--hhChhHHHHHHHHHHH
Confidence 467888887766553 3455667777777753 5677889999999965
No 221
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=38.96 E-value=53 Score=16.33 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=27.8
Q ss_pred CCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 12 GDGRLSHDDLKSYMNCA-GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
-+|.++..|...+-+.+ ....+..+...+...+........++.+|...+...
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRA 65 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 47899999865443322 122333333334333322222226678888887764
No 222
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=38.39 E-value=50 Score=15.87 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=20.7
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 034995 14 GRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG 45 (76)
Q Consensus 14 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 45 (76)
..-+.+||...|...|+..++.-+-.-++.+.
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 35577889999999999999887776666653
No 223
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=38.05 E-value=1.5e+02 Score=21.15 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 32 ATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
+..++++..+..++...+..|+++.|.........
T Consensus 430 ~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~ 464 (714)
T KOG4629|consen 430 MGDEEAERAFSLFEGASDENITRSSFKEWIVNIYR 464 (714)
T ss_pred CCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHH
Confidence 55677888888887655566999999888776554
No 224
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=37.43 E-value=44 Score=24.79 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=30.5
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGED 47 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~ 47 (76)
-.|.|+.+.+..++.++|...+.+++.-+|..+..+
T Consensus 1134 MRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~ 1169 (1301)
T PF05788_consen 1134 MRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLE 1169 (1301)
T ss_pred hhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhccc
Confidence 369999999999999999999988888777776543
No 225
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=36.93 E-value=64 Score=20.51 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=26.7
Q ss_pred HhhhccCCCCcccHHHHHHHHHHcCCCCCH----------HHHHHHHHhhC
Q 034995 5 FKVMDKDGDGRLSHDDLKSYMNCAGFAATD----------DDIKAMIRLGG 45 (76)
Q Consensus 5 F~~~d~~~~g~i~~~el~~~l~~~~~~~~~----------~~~~~~~~~~d 45 (76)
|...+.++.+.++..+...++..+|.+... +++..++....
T Consensus 131 FDI~~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~ 181 (342)
T cd07894 131 FDIRKKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELD 181 (342)
T ss_pred EeeEEcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHH
Confidence 444455556788899999999988764322 45556655554
No 226
>PRK03341 arginine repressor; Provisional
Probab=36.92 E-value=82 Score=17.90 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=27.8
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG 45 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 45 (76)
..+..+.+||...|+..|+..++.-+..-++.+.
T Consensus 26 ~~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~eL~ 59 (168)
T PRK03341 26 RQSVRSQAELAALLADEGIEVTQATLSRDLDELG 59 (168)
T ss_pred HCCCccHHHHHHHHHHcCCcccHHHHHHHHHHhc
Confidence 4567789999999999999999988877666553
No 227
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.52 E-value=52 Score=18.17 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 034995 19 DDLKSYMNCAGFAATDDDIKAMIRLGG 45 (76)
Q Consensus 19 ~el~~~l~~~~~~~~~~~~~~~~~~~d 45 (76)
.++..++...+++++..|+.++++..+
T Consensus 102 ~Dm~~I~~~~~f~vS~pElsAlfR~~~ 128 (155)
T COG4807 102 DDMLAILTEQQFRVSMPELSALFRAPD 128 (155)
T ss_pred chHHHHHhccCcccccHHHHHHHhCCC
Confidence 456677777788888888888887654
No 228
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.35 E-value=64 Score=16.44 Aligned_cols=41 Identities=7% Similarity=0.014 Sum_probs=22.2
Q ss_pred HHHHcCCCCCHHHHHHHHHhhCCCCCCC-ccHHHHHHHHHhhcc
Q 034995 24 YMNCAGFAATDDDIKAMIRLGGEDENDG-VSSPSFSNSLLIATS 66 (76)
Q Consensus 24 ~l~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~~ef~~~l~~~~~ 66 (76)
.++.+| ++-++++.++.....++... -+......++.....
T Consensus 50 ~lr~~G--~sL~eI~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (107)
T cd04777 50 ELKGLG--FSLIEIQKIFSYKRLTKSRTHEDQDYYKSFLKNKKD 91 (107)
T ss_pred HHHHCC--CCHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH
Confidence 344556 55577898887654332222 224555666655543
No 229
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=36.10 E-value=64 Score=16.42 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhC-----CCCCCCccHHHHHHH
Q 034995 18 HDDLKSYMNCAGFAATDDDIKAMIRLGG-----EDENDGVSSPSFSNS 60 (76)
Q Consensus 18 ~~el~~~l~~~~~~~~~~~~~~~~~~~d-----~~~~~~i~~~ef~~~ 60 (76)
.+.|+.+|+.-|..++.+++..++...+ -...|.|+.+.+...
T Consensus 11 v~~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kv 58 (90)
T PF02337_consen 11 VSILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKV 58 (90)
T ss_dssp HHHHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHH
T ss_pred HHHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHH
Confidence 3456667777788898888887765543 245677877766543
No 230
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=35.86 E-value=51 Score=15.24 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAM 40 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~ 40 (76)
..+.+++..+.+..|+..+.+++...
T Consensus 24 ~~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 24 AEDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred cCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34577888888888998888887653
No 231
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=35.54 E-value=11 Score=20.74 Aligned_cols=48 Identities=6% Similarity=-0.029 Sum_probs=29.8
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 14 GRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 14 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
-.|+.+|++.+++.....+++. +....-.+.|..|+|+-....|.+..
T Consensus 8 ~~vTldevr~Av~~f~~~lp~g----i~rt~lv~~d~~iD~~~L~~yL~g~p 55 (140)
T PF13075_consen 8 VDVTLDEVRRAVHQFEEDLPKG----INRTILVNDDQSIDFERLAPYLGGIP 55 (140)
T ss_pred ccccHHHHHHHHHHHHHhCccC----CceEEEEcCCceecHHHHhhhcCCCC
Confidence 4577888888888765444332 22222346677888887777776544
No 232
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=35.27 E-value=70 Score=16.57 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHh
Q 034995 20 DLKSYMNCAGFAATDDDIKAMIRL 43 (76)
Q Consensus 20 el~~~l~~~~~~~~~~~~~~~~~~ 43 (76)
.+...|...|..+++++++.++..
T Consensus 76 ~v~~~L~~~gi~~t~~~i~~~IEa 99 (108)
T PF09682_consen 76 YVKERLKKKGIKVTDEQIEGAIEA 99 (108)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH
Confidence 455667777889999888877654
No 233
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=34.99 E-value=1.9e+02 Score=21.55 Aligned_cols=33 Identities=9% Similarity=0.088 Sum_probs=26.5
Q ss_pred HHHHHHHHhhCCCCCCCccHHHHHHHHHhhccC
Q 034995 35 DDIKAMIRLGGEDENDGVSSPSFSNSLLIATSS 67 (76)
Q Consensus 35 ~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 67 (76)
.+++.+|..+..++.-.++.+.++.++......
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrD 253 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRD 253 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccC
Confidence 468889999988887889999999888765543
No 234
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=34.89 E-value=41 Score=13.81 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=7.0
Q ss_pred HHHHHHHHHHcCCC
Q 034995 18 HDDLKSYMNCAGFA 31 (76)
Q Consensus 18 ~~el~~~l~~~~~~ 31 (76)
.++|+.+|..-|..
T Consensus 6 ~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 6 DSDLKSWLKSHGIP 19 (38)
T ss_pred HHHHHHHHHHcCCC
Confidence 44555555554443
No 235
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=34.26 E-value=20 Score=17.88 Aligned_cols=22 Identities=23% Similarity=-0.005 Sum_probs=14.8
Q ss_pred HhhCCCCCCCccHHHHHHHHHh
Q 034995 42 RLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 42 ~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
+.+..+.+...+|++|..++.+
T Consensus 12 RRFsl~r~~~~~f~ef~~ll~~ 33 (80)
T cd06403 12 RRFSLDRNKPGKFEDFYKLLEH 33 (80)
T ss_pred EEEEeccccCcCHHHHHHHHHH
Confidence 3444455566788888888765
No 236
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=34.17 E-value=67 Score=16.08 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=31.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
.|.++.++...+-. .+.+.+...+++.... ..|.-.|..|+..+..
T Consensus 32 ~gvlt~~~~~~I~~---~~t~~~k~~~Lld~L~--~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 32 KDILTDSMAESIMA---KPTSFSQNVALLNLLP--KRGPRAFSAFCEALRE 77 (90)
T ss_pred cCCCCHHHHHHHHc---CCCcHHHHHHHHHHHH--HhChhHHHHHHHHHHh
Confidence 57788777665543 3355566777777764 4666789999999965
No 237
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=34.12 E-value=1.4e+02 Score=20.19 Aligned_cols=45 Identities=9% Similarity=0.245 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhCC--CCCCCccHHHHHHHHHhh
Q 034995 20 DLKSYMNCAGFAATDDDIKAMIRLGGE--DENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 20 el~~~l~~~~~~~~~~~~~~~~~~~d~--~~~~~i~~~ef~~~l~~~ 64 (76)
-+...++.+|..++++++..++..+-. +..+.|+-+|+..++...
T Consensus 431 av~~~l~~lG~~~~~~~~~~l~~~vk~~a~~~~~l~~~el~~i~~~~ 477 (503)
T PLN03228 431 AVKDRLKELGYELDDEKLNEVFSRFRDLTKEKKRITDADLKALVVNG 477 (503)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcc
Confidence 356677888999999888887665421 123569999998888764
No 238
>PLN02230 phosphoinositide phospholipase C 4
Probab=34.10 E-value=1.1e+02 Score=21.24 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=24.8
Q ss_pred CHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 33 TDDDIKAMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 33 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
+..++..+|..+..++ +.++.++|..+|....
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEG 58 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 4567888888886443 7899999999998766
No 239
>KOG4064 consensus Cysteine dioxygenase CDO1 [Amino acid transport and metabolism]
Probab=33.47 E-value=58 Score=18.50 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=23.3
Q ss_pred cccHHHHHHHHHHc--CCCCCHHHHHHHHHhhCCCCCCCccHH
Q 034995 15 RLSHDDLKSYMNCA--GFAATDDDIKAMIRLGGEDENDGVSSP 55 (76)
Q Consensus 15 ~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ 55 (76)
.++..+|-..+..+ +..++-+++.+++..+..+.+.+-.|.
T Consensus 11 ~~sl~dLv~~lh~~F~~~~vnveeV~~lM~sYkSnp~EWr~yA 53 (196)
T KOG4064|consen 11 MISLVDLVVQLHEIFQQKLVNVEEVMKLMASYKSNPNEWRRYA 53 (196)
T ss_pred hhhHHHHHHHHHHHHHhcccCHHHHHHHHHHhhcCHHHHHHHH
Confidence 45566665555542 444566777777777765544433333
No 240
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=33.41 E-value=47 Score=14.04 Aligned_cols=25 Identities=20% Similarity=0.551 Sum_probs=18.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHhhC
Q 034995 21 LKSYMNCAGFAATDDDIKAMIRLGG 45 (76)
Q Consensus 21 l~~~l~~~~~~~~~~~~~~~~~~~d 45 (76)
|-.+|...+...+..+++.++..-.
T Consensus 3 Ld~~L~~~~~~~sr~~a~~~I~~g~ 27 (48)
T PF01479_consen 3 LDKFLSRLGLASSRSEARRLIKQGR 27 (48)
T ss_dssp HHHHHHHTTSSSSHHHHHHHHHTTT
T ss_pred HHHHHHHcCCcCCHHHHHHhcCCCE
Confidence 3456676788888888988887643
No 241
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=32.94 E-value=28 Score=20.20 Aligned_cols=43 Identities=12% Similarity=-0.013 Sum_probs=27.3
Q ss_pred HHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccC
Q 034995 24 YMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSS 67 (76)
Q Consensus 24 ~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~ 67 (76)
++..++..++++++..+...+.- |--.+++..|..++-.....
T Consensus 86 ~~~~L~~~Lt~~Qie~vkd~mTy-g~v~~T~k~y~~mvP~Ltee 128 (188)
T PF12875_consen 86 YMAKLSKYLTEEQIEQVKDGMTY-GVVPFTYKGYLDMVPSLTEE 128 (188)
T ss_dssp HHHHHTTT--HHHHHHHHHHCTT-THHHHHHHHHHHH-TT--HH
T ss_pred HHHHHHhhcCHHHHHHHHccccc-eehhhhHHHHHHHcCcccHH
Confidence 56667889999999988887752 33356888888887544433
No 242
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=32.70 E-value=74 Score=16.08 Aligned_cols=50 Identities=10% Similarity=-0.031 Sum_probs=32.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLL 62 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 62 (76)
+..|+=.+++..|.+.-.-.+..+..++=.-+|.-.+++|+.=||-...+
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 46688889999988853333334555566667888999998666655443
No 243
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=32.54 E-value=1.3e+02 Score=19.02 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=38.3
Q ss_pred CCCcccHHHHHHHHHHc---------------CCCCCHHHHHHHHHhhCC-----CCCCCccHHHHHHHHHhhccCC
Q 034995 12 GDGRLSHDDLKSYMNCA---------------GFAATDDDIKAMIRLGGE-----DENDGVSSPSFSNSLLIATSSS 68 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~---------------~~~~~~~~~~~~~~~~d~-----~~~~~i~~~ef~~~l~~~~~~~ 68 (76)
++-.++-.+|++++-.+ ..-+++.++..+.+.|-. ..++.|+...|.+++....+++
T Consensus 214 ~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~~~Is~W~~ynLlT~AnKsS 290 (323)
T PF12987_consen 214 GDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKGGEISMWNFYNLLTGANKSS 290 (323)
T ss_pred ccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCCCcccHHHHHHHHhcccchh
Confidence 36778888888887643 112456667777666532 2467899999999998854433
No 244
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=32.53 E-value=70 Score=15.79 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=17.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAM 40 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~ 40 (76)
.++..+++.+.+.+| +++.+++.+
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~i 31 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERV 31 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHH
Confidence 567788899999887 666666655
No 245
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.27 E-value=60 Score=15.33 Aligned_cols=18 Identities=6% Similarity=0.148 Sum_probs=13.2
Q ss_pred CCCCccHHHHHHHHHhhc
Q 034995 48 ENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 48 ~~~~i~~~ef~~~l~~~~ 65 (76)
.+|.|+++.|+..++...
T Consensus 36 ~~g~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 36 QRGSIDLDTFLKQVRSLA 53 (65)
T ss_dssp HTTSS-HHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH
Confidence 467799999999887654
No 246
>PF14164 YqzH: YqzH-like protein
Probab=32.17 E-value=66 Score=15.35 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=12.3
Q ss_pred HHHHhhhccC-CCCcccHHHHHHHHH
Q 034995 2 EDVFKVMDKD-GDGRLSHDDLKSYMN 26 (76)
Q Consensus 2 ~~~F~~~d~~-~~g~i~~~el~~~l~ 26 (76)
+..|+.|..| ..-.++..|++.+.+
T Consensus 11 ~~~l~QYg~d~~~~pls~~E~~~L~~ 36 (64)
T PF14164_consen 11 INCLRQYGYDVECMPLSDEEWEELCK 36 (64)
T ss_pred HHHHHHhCCcccCCCCCHHHHHHHHH
Confidence 3455555544 344555555544443
No 247
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=32.15 E-value=72 Score=15.83 Aligned_cols=44 Identities=2% Similarity=0.012 Sum_probs=26.1
Q ss_pred HHHHHHHHHH----cCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 034995 18 HDDLKSYMNC----AGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLL 62 (76)
Q Consensus 18 ~~el~~~l~~----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 62 (76)
...++.+++. ++.+++++..+.++...-.++- ..++..+..++.
T Consensus 30 E~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~~ 77 (79)
T PF14069_consen 30 EKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMMN 77 (79)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHc
Confidence 3445555553 3667777777777766644333 666666666653
No 248
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=31.91 E-value=77 Score=18.46 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=26.3
Q ss_pred hccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 8 MDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 8 ~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
+..+++|++..+++.+.-+..|..-+-+++..+.+.-
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~n 63 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRN 63 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcc
Confidence 3457889999999887766667666667777666543
No 249
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=31.63 E-value=1e+02 Score=17.47 Aligned_cols=19 Identities=16% Similarity=0.053 Sum_probs=13.6
Q ss_pred CCCCCccHHHHHHHHHhhc
Q 034995 47 DENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 47 ~~~~~i~~~ef~~~l~~~~ 65 (76)
+.++.|++..|+.+|....
T Consensus 95 ~~n~~i~~~~ff~~lQ~~l 113 (175)
T PF04876_consen 95 STNGLIDIGKFFDILQPKL 113 (175)
T ss_pred CcccceeHHHHHHHHHHHh
Confidence 4577788888888876543
No 250
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=31.48 E-value=78 Score=17.78 Aligned_cols=28 Identities=0% Similarity=0.033 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 17 SHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 17 ~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
+++|+.+.++..-..+++++.++.++.|
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y 29 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYY 29 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555433346666666666554
No 251
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=31.30 E-value=41 Score=15.06 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=12.8
Q ss_pred HHhhhccCCCCcccHHHHHHHHH
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMN 26 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~ 26 (76)
+|..+...+++.++.+|+...+.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTST
T ss_pred cHHHHHHcCCCCCCHHHHHHHcC
Confidence 34445455567777777665443
No 252
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=31.27 E-value=81 Score=16.12 Aligned_cols=30 Identities=7% Similarity=0.247 Sum_probs=21.7
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
.|+.+++.++.+..-+..+++++..+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 577888888877777788888776654443
No 253
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=31.26 E-value=83 Score=16.22 Aligned_cols=30 Identities=10% Similarity=0.115 Sum_probs=18.6
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
.++.+++...++..+..++..-+...+..+
T Consensus 23 ~~ta~ei~~~l~~~~~~is~~TVYR~L~~L 52 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISLATVYRTLDLL 52 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--HHHHHHHHHHH
T ss_pred CCCHHHHHHHhhhccCCcCHHHHHHHHHHH
Confidence 777788777777766666666555544443
No 254
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=31.24 E-value=33 Score=17.06 Aligned_cols=16 Identities=6% Similarity=-0.018 Sum_probs=11.8
Q ss_pred CCCCccHHHHHHHHHh
Q 034995 48 ENDGVSSPSFSNSLLI 63 (76)
Q Consensus 48 ~~~~i~~~ef~~~l~~ 63 (76)
..+.|+|+||..+=..
T Consensus 32 APmSIS~eeY~~LH~~ 47 (81)
T PF10891_consen 32 APMSISFEEYIRLHIK 47 (81)
T ss_pred cccEeeHHHHHHHHHH
Confidence 3567999999876543
No 255
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=31.20 E-value=69 Score=15.97 Aligned_cols=22 Identities=0% Similarity=-0.141 Sum_probs=13.7
Q ss_pred HHHhhCCCCCCCccHHHHHHHH
Q 034995 40 MIRLGGEDENDGVSSPSFSNSL 61 (76)
Q Consensus 40 ~~~~~d~~~~~~i~~~ef~~~l 61 (76)
+.+.++.+.+|+|..+-+..+=
T Consensus 28 L~~~~~~~~dG~Vpl~~i~~F~ 49 (82)
T cd08032 28 LREQIEKSRDGYIDISLLVSFN 49 (82)
T ss_pred HHHHhcCCCCCCEeHHHHhcch
Confidence 4455666678888776555443
No 256
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=31.09 E-value=1.5e+02 Score=19.03 Aligned_cols=47 Identities=9% Similarity=0.168 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhh---CCCCCCCccHHHHHHHHHhhc
Q 034995 19 DDLKSYMNCAGFAATDDDIKAMIRLG---GEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 19 ~el~~~l~~~~~~~~~~~~~~~~~~~---d~~~~~~i~~~ef~~~l~~~~ 65 (76)
.-+...++.+|..++++++..++..+ .......|+-+|+..++....
T Consensus 323 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~~~~~~ 372 (378)
T PRK11858 323 HALKNKLKEYGIELSREELCELLEKVKELSERKKRSLTDEELKELVEDVR 372 (378)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 34566788889999988887766553 223346899999999887654
No 257
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=30.50 E-value=75 Score=15.52 Aligned_cols=12 Identities=8% Similarity=0.307 Sum_probs=5.2
Q ss_pred CCCCcccHHHHH
Q 034995 11 DGDGRLSHDDLK 22 (76)
Q Consensus 11 ~~~g~i~~~el~ 22 (76)
+++|.|+.+.+.
T Consensus 30 ~~~G~Vpl~~i~ 41 (76)
T cd08029 30 SNNGWVPIKTIA 41 (76)
T ss_pred CCCCcEehHHHh
Confidence 344444444443
No 258
>PF02334 RTP: Replication terminator protein; InterPro: IPR003432 The bacterial replication terminator protein (RTP) plays a role in the termination of DNA replication by impeding replication fork movement. Two RTP dimers bind to the two inverted repeat regions at the termination site.; GO: 0003677 DNA binding, 0006274 DNA replication termination; PDB: 2DPU_A 2DPD_A 1F4K_A 1J0R_B 2EFW_F 2DQR_B 1BM9_B.
Probab=30.39 E-value=64 Score=17.28 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=22.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
-|.--.++|++-++.+|..|+..++...+-.+
T Consensus 33 Yg~q~Ld~lr~EFk~~Gy~P~hsEvYraLHeL 64 (122)
T PF02334_consen 33 YGLQLLDELRSEFKPLGYRPNHSEVYRALHEL 64 (122)
T ss_dssp BCTCHHHHHHHHHTTTT----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 46777888999999999999998887766554
No 259
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=30.22 E-value=74 Score=16.19 Aligned_cols=25 Identities=12% Similarity=0.314 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 19 DDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 19 ~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
.+-..++..+|.++++. ++-++...
T Consensus 17 ~eA~~Vl~~mGlt~S~a-irm~L~~v 41 (88)
T COG3077 17 EEATAVLEEMGLTISDA-IRMFLTKV 41 (88)
T ss_pred HHHHHHHHHhCCCHHHH-HHHHHHHH
Confidence 45566777778777654 45444444
No 260
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=30.15 E-value=64 Score=14.56 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=16.4
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHH
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMI 41 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 41 (76)
..|.|+..|+..=+...-...+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 356777777765555443444445554443
No 261
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=30.11 E-value=65 Score=15.71 Aligned_cols=23 Identities=4% Similarity=0.017 Sum_probs=11.8
Q ss_pred HHHhhCCCCCCCccHHHHHHHHH
Q 034995 40 MIRLGGEDENDGVSSPSFSNSLL 62 (76)
Q Consensus 40 ~~~~~d~~~~~~i~~~ef~~~l~ 62 (76)
++..+..+..+.++..+-..++.
T Consensus 42 il~~w~~n~~~~lt~~~~~~~i~ 64 (86)
T PF04433_consen 42 ILAEWRKNPNKYLTKTDARKLIK 64 (86)
T ss_dssp HHHHHHHHTTS---HHHHHHHTT
T ss_pred HHHHHHHCCCCcccHHHHHHHcc
Confidence 44555556667777776665554
No 262
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=29.97 E-value=74 Score=15.23 Aligned_cols=39 Identities=8% Similarity=0.127 Sum_probs=25.4
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
+|..+=....+.|+...|..++..+| +++.-++..+..+
T Consensus 9 l~Gdy~~~~g~~i~~~~Li~ll~~~G--v~e~avR~alsRl 47 (70)
T PF07848_consen 9 LLGDYLRPRGGWIWVASLIRLLAAFG--VSESAVRTALSRL 47 (70)
T ss_dssp HHHHHCCTTTS-EEHHHHHHHHCCTT----HHHHHHHHHHH
T ss_pred HHHHHhccCCCceeHHHHHHHHHHcC--CChHHHHHHHHHH
Confidence 34444566778999999999998876 6666666655554
No 263
>PRK13510 sulfur transfer complex subunit TusB; Provisional
Probab=29.95 E-value=51 Score=16.72 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=14.2
Q ss_pred CCCCccHHHHHHHHHhhc
Q 034995 48 ENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 48 ~~~~i~~~ef~~~l~~~~ 65 (76)
+-..|+|++|+.+.....
T Consensus 73 ~i~~IdY~~FV~Lt~~h~ 90 (95)
T PRK13510 73 SIILISYTDFVRLTVKHS 90 (95)
T ss_pred CceEECHHHHHHHHHhcC
Confidence 445899999999987654
No 264
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=29.94 E-value=1.6e+02 Score=19.51 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=19.4
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 14 GRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 14 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
.++..+++.++++......+.+++..++..+
T Consensus 439 sYL~kqd~akml~e~~~~~~~e~le~fml~~ 469 (503)
T KOG2802|consen 439 SYLEKQDFAKMLQEIQEVKTPEELETFMLKH 469 (503)
T ss_pred HHHhHHHHHHHHHHHHhcCCHHHHHHHHHHc
Confidence 3456677777777665556666666666554
No 265
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=29.62 E-value=89 Score=16.10 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHH
Q 034995 16 LSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSL 61 (76)
Q Consensus 16 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l 61 (76)
++..|..+++.. .+.+..++..++... ..+++-++.-.++
T Consensus 71 L~~~E~~qi~Nl--~P~~~~El~~ii~~~----~~r~~ee~l~~iL 110 (117)
T PF03874_consen 71 LTEFEILQIINL--RPTTAVELRAIIESL----ESRFSEEDLEEIL 110 (117)
T ss_dssp S-HHHHHHHHHH----SSHHHHHHHSTTG----TTTSTHHHHHHHH
T ss_pred CCHHHHHHHhcC--CCCCHHHHHHHHHHh----ccCCCHHHHHHHH
Confidence 455555544443 233444555554443 3345545444444
No 266
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.50 E-value=87 Score=15.91 Aligned_cols=40 Identities=15% Similarity=0.286 Sum_probs=27.2
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
++..+-.. ++.++..++...++.-+..++..-+...+..+
T Consensus 6 Il~~l~~~-~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L 45 (116)
T cd07153 6 ILEVLLES-DGHLTAEEIYERLRKKGPSISLATVYRTLELL 45 (116)
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34444333 67899999998888877777777666655544
No 267
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=29.42 E-value=1.1e+02 Score=17.08 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=16.9
Q ss_pred hhhccCCCCcccHHHHHHHHHH
Q 034995 6 KVMDKDGDGRLSHDDLKSYMNC 27 (76)
Q Consensus 6 ~~~d~~~~g~i~~~el~~~l~~ 27 (76)
...|+.+.++++.+||+.++-.
T Consensus 76 ~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 76 NQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHhcCCceeHHHHHHHHHH
Confidence 3456777788999999987654
No 268
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=29.31 E-value=85 Score=15.75 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=7.3
Q ss_pred ccHHHHHHHH
Q 034995 52 VSSPSFSNSL 61 (76)
Q Consensus 52 i~~~ef~~~l 61 (76)
|+.++|...+
T Consensus 77 it~~e~~~al 86 (87)
T PF13331_consen 77 ITREEFEEAL 86 (87)
T ss_pred CCHHHHHHHh
Confidence 7888887654
No 269
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=28.81 E-value=72 Score=14.78 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=17.8
Q ss_pred HHHhhCCCCCCCccHHHHHHHHHh
Q 034995 40 MIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 40 ~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
++..+-.+.+|..+|+.+-++-..
T Consensus 19 ~yhLYrsek~G~rdYEKY~~LAL~ 42 (56)
T TIGR02736 19 IYHLYRSQKKGERDYEKYANLALN 42 (56)
T ss_pred HHHhhhhhcccccCHHHHhhhhcc
Confidence 344566778999999999877654
No 270
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=28.78 E-value=66 Score=14.33 Aligned_cols=29 Identities=3% Similarity=0.226 Sum_probs=20.3
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGE 46 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 46 (76)
+|.++..+++..+. .+...+-.++..+|.
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~ 36 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDR 36 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhc
Confidence 78899999988773 566666666666653
No 271
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=28.71 E-value=14 Score=14.83 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=6.6
Q ss_pred HHHhhCCCCCCCcc
Q 034995 40 MIRLGGEDENDGVS 53 (76)
Q Consensus 40 ~~~~~d~~~~~~i~ 53 (76)
++..-|-++|-.|+
T Consensus 4 LL~qEDTDgn~qIT 17 (30)
T PF07492_consen 4 LLEQEDTDGNFQIT 17 (30)
T ss_pred HhhccccCCCcEEE
Confidence 34444445555544
No 272
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=28.36 E-value=1.2e+02 Score=17.26 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=17.0
Q ss_pred hccCCCCcccHHHHHHHHHHcCCCC
Q 034995 8 MDKDGDGRLSHDDLKSYMNCAGFAA 32 (76)
Q Consensus 8 ~d~~~~g~i~~~el~~~l~~~~~~~ 32 (76)
+...+...|+.+++..+|..+|+.-
T Consensus 79 C~~EkRKTIngdDllwAm~tLGFe~ 103 (168)
T KOG0869|consen 79 CQREKRKTINGDDLLWAMSTLGFEN 103 (168)
T ss_pred HHHHhcCcccHHHHHHHHHHcCcHh
Confidence 3345567777778777777777643
No 273
>PRK10788 periplasmic folding chaperone; Provisional
Probab=28.11 E-value=2e+02 Score=19.66 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.6
Q ss_pred HHHHcCCCCCHHHHHHHHHhhC-CCCCCCccHHHHHHHHHhh
Q 034995 24 YMNCAGFAATDDDIKAMIRLGG-EDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 24 ~l~~~~~~~~~~~~~~~~~~~d-~~~~~~i~~~ef~~~l~~~ 64 (76)
..+.+|..++++++...+.... -..+|..+.+.|..++...
T Consensus 104 ~A~~lgi~vsd~ev~~~I~~~p~Fq~~G~Fd~~~y~~~L~~~ 145 (623)
T PRK10788 104 YARELGLGISDEQVKQAIFATPAFQTDGKFDNNKYLAILNQM 145 (623)
T ss_pred HHHHcCCCcCHHHHHHHHHhCcccccCCCcCHHHHHHHHHHc
Confidence 3445699999999999887742 2357888888888888654
No 274
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=28.11 E-value=33 Score=24.13 Aligned_cols=61 Identities=11% Similarity=0.187 Sum_probs=38.1
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHH---------HHHHHHhhCCCCC-----------------------C
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDD---------IKAMIRLGGEDEN-----------------------D 50 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~---------~~~~~~~~d~~~~-----------------------~ 50 (76)
++|..+|-+.++.++..++.....+++..+...+ ...++...|..++ |
T Consensus 441 ~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~~ 520 (975)
T KOG2419|consen 441 RILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSFG 520 (975)
T ss_pred hcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccccC
Confidence 4566677788888888877666555433221111 1234455566666 8
Q ss_pred CccHHHHHHHHHh
Q 034995 51 GVSSPSFSNSLLI 63 (76)
Q Consensus 51 ~i~~~ef~~~l~~ 63 (76)
.++.++.+.++..
T Consensus 521 ~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 521 VVTVDELVALLAL 533 (975)
T ss_pred eeEHHHHHHHHHH
Confidence 8889998888873
No 275
>PF04077 DsrH: DsrH like protein; InterPro: IPR007215 The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulphur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulphide moiety, delivered by the cysteine desulphurase IscS to TusA, then to TusBCD. The activated sulphur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulphur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulphur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulphur flux, such as oxidation from sulphide to molecular sulphur to sulphate [].; GO: 0002143 tRNA wobble position uridine thiolation, 0005737 cytoplasm; PDB: 2HYB_O 2HY5_C 1X9A_A 1RHX_A 2D1P_C.
Probab=27.92 E-value=55 Score=16.25 Aligned_cols=16 Identities=6% Similarity=-0.091 Sum_probs=11.9
Q ss_pred CCccHHHHHHHHHhhc
Q 034995 50 DGVSSPSFSNSLLIAT 65 (76)
Q Consensus 50 ~~i~~~ef~~~l~~~~ 65 (76)
..|+|.+|+.+.....
T Consensus 70 ~~Idy~~fV~Lt~~~~ 85 (88)
T PF04077_consen 70 KLIDYDGFVELTEQHD 85 (88)
T ss_dssp EEE-HHHHHHHHHHSS
T ss_pred eEeCHHHHHHHHHHcc
Confidence 3789999999887654
No 276
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=27.70 E-value=1.1e+02 Score=16.54 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=20.7
Q ss_pred CcccHHHHHHHHHHc-CCCCCHHHHHHHHHhh
Q 034995 14 GRLSHDDLKSYMNCA-GFAATDDDIKAMIRLG 44 (76)
Q Consensus 14 g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~ 44 (76)
+.|+.+.+..++... |..++..++.-+...+
T Consensus 49 ~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 49 DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 467778888777765 4677777765554444
No 277
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=27.64 E-value=77 Score=14.84 Aligned_cols=31 Identities=19% Similarity=0.610 Sum_probs=18.6
Q ss_pred HHHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHH
Q 034995 3 DVFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKA 39 (76)
Q Consensus 3 ~~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~ 39 (76)
.+|..| .+++|.+...++...| | ++...+..
T Consensus 11 kA~e~y-~~~~g~i~lkdIA~~L---g--vs~~tIr~ 41 (60)
T PF10668_consen 11 KAFEIY-KESNGKIKLKDIAEKL---G--VSESTIRK 41 (60)
T ss_pred HHHHHH-HHhCCCccHHHHHHHH---C--CCHHHHHH
Confidence 356655 4467888887776654 3 44444544
No 278
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.62 E-value=90 Score=15.48 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=31.7
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
++|.++..+...+.. .....+...+++.... ..|.-.|..|+..+..
T Consensus 27 ~~~Vlt~~~~e~I~~---~~tr~~q~~~LLd~L~--~RG~~AF~~F~~aL~~ 73 (84)
T cd08326 27 SRGVFTPDMIEEIQA---AGSRRDQARQLLIDLE--TRGKQAFPAFLSALRE 73 (84)
T ss_pred hcCCCCHHHHHHHHc---CCCHHHHHHHHHHHHH--hcCHHHHHHHHHHHHh
Confidence 356777777665553 3344566777777764 4666789999999875
No 279
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=27.61 E-value=37 Score=17.20 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=13.1
Q ss_pred CCcccHHHHHHHHHHcCCCCCHH
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDD 35 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~ 35 (76)
++.-+..++..-|..+|+..+.+
T Consensus 39 ns~~s~~~~~~~L~~~Gi~~~~~ 61 (101)
T PF13344_consen 39 NSSRSREEYAKKLKKLGIPVDED 61 (101)
T ss_dssp -SSS-HHHHHHHHHHTTTT--GG
T ss_pred CCCCCHHHHHHHHHhcCcCCCcC
Confidence 45566677777777777776543
No 280
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=27.58 E-value=88 Score=15.36 Aligned_cols=15 Identities=7% Similarity=-0.044 Sum_probs=7.5
Q ss_pred hCCCCCCCccHHHHH
Q 034995 44 GGEDENDGVSSPSFS 58 (76)
Q Consensus 44 ~d~~~~~~i~~~ef~ 58 (76)
+..+++|+|..+-+.
T Consensus 27 ~~~~~dG~Vpl~~i~ 41 (77)
T cd08033 27 VRRNKEGYVPIKLIA 41 (77)
T ss_pred hccCCCCcEehHHHh
Confidence 444556666555443
No 281
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=27.50 E-value=76 Score=14.62 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=10.2
Q ss_pred HhhhccCCCCcccHHHHHHHHHHc
Q 034995 5 FKVMDKDGDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 5 F~~~d~~~~g~i~~~el~~~l~~~ 28 (76)
+..++.+....++..+...-....
T Consensus 10 ~~~l~t~~~~GLs~~ev~~r~~~~ 33 (69)
T PF00690_consen 10 LKRLNTSSSQGLSSEEVEERRKKY 33 (69)
T ss_dssp HHHHTTBTSSBBTHHHHHHHHHHH
T ss_pred HHHHCcCCCCCCCHHHHHHHHHhc
Confidence 334443444444444444444433
No 282
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.44 E-value=67 Score=13.97 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=18.8
Q ss_pred CCCccc-HHHHHHHHHHcCCCCCHHHHHHHHHh
Q 034995 12 GDGRLS-HDDLKSYMNCAGFAATDDDIKAMIRL 43 (76)
Q Consensus 12 ~~g~i~-~~el~~~l~~~~~~~~~~~~~~~~~~ 43 (76)
..|.|+ ...+...|...|+.+++..++.+++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 356665 33334444555778887777766654
No 283
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=27.30 E-value=1.1e+02 Score=16.19 Aligned_cols=34 Identities=6% Similarity=0.194 Sum_probs=20.7
Q ss_pred HhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 5 FKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 5 F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
+..+. +....++.+|+..++. -|...++.+++.+
T Consensus 10 ~~~~~-~~~~~vtl~elA~~l~-----cS~Rn~r~lLkkm 43 (115)
T PF12793_consen 10 WQHYG-GQPVEVTLDELAELLF-----CSRRNARTLLKKM 43 (115)
T ss_pred HHHcC-CCCcceeHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 33444 5566788899888775 3444455555554
No 284
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=26.95 E-value=2e+02 Score=19.38 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=26.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
..-.++.++++++-+.....++++|.+++..++
T Consensus 385 ~k~~ItkEeVkKLAkLARLeLSEEElEkl~~dL 417 (477)
T PRK12821 385 KKQQLNKDELKKLARLVMFDLDDAELEKLQVEF 417 (477)
T ss_pred ccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 346799999999988888899999887765544
No 285
>PTZ00315 2'-phosphotransferase; Provisional
Probab=26.83 E-value=2.1e+02 Score=19.94 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=26.2
Q ss_pred ccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 034995 9 DKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRL 43 (76)
Q Consensus 9 d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 43 (76)
..+.+|.++.++|......-+..++.+.+..++..
T Consensus 399 ~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ 433 (582)
T PTZ00315 399 PITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRD 433 (582)
T ss_pred CcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHc
Confidence 35678999999988887765666787877777654
No 286
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=26.81 E-value=57 Score=14.93 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=11.6
Q ss_pred CCCC-ccHHHHHHHHHh
Q 034995 48 ENDG-VSSPSFSNSLLI 63 (76)
Q Consensus 48 ~~~~-i~~~ef~~~l~~ 63 (76)
++++ |+|.+++.+|..
T Consensus 14 ~~~WlvtyaDlmTLLl~ 30 (58)
T PF13677_consen 14 SPRWLVTYADLMTLLLA 30 (58)
T ss_pred CccHHHHHHHHHHHHHH
Confidence 3444 899999888765
No 287
>PF02188 GoLoco: GoLoco motif; InterPro: IPR003109 In heterotrimeric G-protein signalling, cell surface receptors (GPCRs) are coupled to membrane-associated heterotrimers comprising a GTP-hydrolysing subunit G-alpha and a G-beta/G-gamma dimer. The inactive form contains the alpha subunit bound to GDP and complexes with the beta and gamma subunit. When the ligand is associated to the receptor, GDP is displaced from G-alpha and GTP is bound. GTP/G-alpha complex dissociates from the trimer and associates to an effector until the intrinsic GTPase activity of G-alpha returns the protein to GDP bound form. Reassociation of GDP bound G-alpha with G-beta/G-gamma dimer terminates the signal. Several mechanisms regulate the signal output at different stage of the G-protein cascade. Two classes of intracellular proteins act as inhibitors of G protein activation: GTPase activating proteins (GAPs), which enhance GTP hydrolysis (see PDOC50132 from PROSITEDOC), and guanine dissociation inhibitors (GDIs), which inhibit GDP dissociation. The GoLoco or G-protein regulatory (GPR) motif found in various G-protein regulators [, ] acts as a GDI on G-alpha(i) [, ]. The crystal structure of the GoLoco motif in complex with G-alpha(i) has been solved []. It consists of three small alpha helices. The highly conserved Asp-Gln-Arg triad within the GoLoco motif participates directly in GDP binding by extending the arginine side chain into the nucleotide binding pocket, highly reminiscent of the catalytic arginine finger employed in GTPase-activating protein (see PDOC50238 from PROSITEDOC). This addition of an arginine in the binding pocket affects the interaction of GDP with G-alpha and therefore is certainly important for the GoLoco GDI activity []. Some proteins known to contain a GoLoco motif are listed below: Mammalian regulators of G-protein signalling 12 and 14 (RGS12 and RGS14), multifaceted signal transduction regulators. Loco, the drosophila RGS12 homologue. Mammalian Purkinje-cell protein-2 (Pcp2). It may function as a cell-type specific modulator for G protein-mediated cell signalling. It is uniquely expressed in cerebellar Purkinje cells and in retinal bipolar neurons. Eukaryotic Rap1GAP. A GTPase activator for the nuclear ras-related regulatory protein RAP-1A. Drosophila protein Rapsynoid (also known as Partner of Inscuteable, Pins) and its mammalian homologues AGS3 and LGN. They form a G-protein regulator family that also contains TPR repeats. ; GO: 0005096 GTPase activator activity, 0007165 signal transduction; PDB: 1KJY_D 3ONW_D 2XNS_D 3QI2_C 2OM2_D.
Probab=26.49 E-value=22 Score=13.32 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=6.6
Q ss_pred HHHHHHHHhhcc
Q 034995 55 PSFSNSLLIATS 66 (76)
Q Consensus 55 ~ef~~~l~~~~~ 66 (76)
++|+.++.+..+
T Consensus 2 e~f~~li~~~Q~ 13 (23)
T PF02188_consen 2 EDFFDLIARVQS 13 (23)
T ss_dssp HHHHHHHHCCCC
T ss_pred hHHHHHHHHHHh
Confidence 456666655543
No 288
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=26.26 E-value=1e+02 Score=15.75 Aligned_cols=50 Identities=10% Similarity=0.180 Sum_probs=26.2
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHH---HHHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIK---AMIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~---~~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
...++.++|..++..+|. +.-+. ..++....+....++-++.+.+|...+
T Consensus 33 ~~p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p 85 (105)
T cd03035 33 KDGLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHP 85 (105)
T ss_pred cCCCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCc
Confidence 345677788887777651 11111 123333322123466677777776654
No 289
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=26.17 E-value=77 Score=14.19 Aligned_cols=21 Identities=14% Similarity=0.267 Sum_probs=14.3
Q ss_pred hccCCCCcccHHHHHHHHHHc
Q 034995 8 MDKDGDGRLSHDDLKSYMNCA 28 (76)
Q Consensus 8 ~d~~~~g~i~~~el~~~l~~~ 28 (76)
|+..+.-.++.++++..|..+
T Consensus 24 YnShNT~rL~ve~~k~lLl~L 44 (48)
T PF08485_consen 24 YNSHNTERLDVEEMKELLLKL 44 (48)
T ss_pred cCCCCccccCHHHHHHHHHhC
Confidence 445566777788877777654
No 290
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.78 E-value=2e+02 Score=18.82 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=31.6
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC-CCCCCCccHHHHHHHHHhh
Q 034995 14 GRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG-EDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 14 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d-~~~~~~i~~~ef~~~l~~~ 64 (76)
..++.+||+..|.. +.. +.+.|..-|.+.. .==.-++-|-||+.+|...
T Consensus 6 ~~~~LeeLe~kLa~-~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~I 55 (379)
T PF11593_consen 6 PNLKLEELEEKLAS-NDN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANI 55 (379)
T ss_pred CCCcHHHHHHHHhc-CCc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 46788999988873 444 5565655555442 1122356799999998765
No 291
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=25.78 E-value=1.8e+02 Score=18.34 Aligned_cols=16 Identities=6% Similarity=0.221 Sum_probs=8.6
Q ss_pred CCCCCHHHHHHHHHhh
Q 034995 29 GFAATDDDIKAMIRLG 44 (76)
Q Consensus 29 ~~~~~~~~~~~~~~~~ 44 (76)
|.+++.+|...++..+
T Consensus 13 g~~Lt~~Ea~~~~~~i 28 (339)
T PRK00188 13 GEDLSEEEAEELMDAI 28 (339)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4455555555555544
No 292
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=25.78 E-value=2.2e+02 Score=19.30 Aligned_cols=43 Identities=9% Similarity=0.129 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhccCCHHHH
Q 034995 29 GFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATSSSKSKL 72 (76)
Q Consensus 29 ~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~el 72 (76)
|..++.+|+..++..+-...=..+....|+..++ ....+.+||
T Consensus 205 g~~Lt~~ea~~~~~~il~g~~~~~q~~AfL~alr-~kget~~El 247 (534)
T PRK14607 205 GEDLSFEEAEDVMEDITDGNATDAQIAGFLTALR-MKGETADEL 247 (534)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCCCHHHH
Confidence 6678888888877776311111233445555553 233344444
No 293
>PHA02142 putative RNA ligase
Probab=25.77 E-value=43 Score=21.59 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=23.3
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCC
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCAGFAA 32 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~~~~~ 32 (76)
+|..++.+..+.++..++..++..+|...
T Consensus 274 vF~v~~i~~~~yl~~~e~~~~~~~~gl~~ 302 (366)
T PHA02142 274 AFRAWFIDEQRFATDEEFQDLCRTLGMEI 302 (366)
T ss_pred EEEEEEeccceeCCHHHHHHHHHHcCCce
Confidence 45666667888999999999999888753
No 294
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=25.77 E-value=90 Score=14.84 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=30.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
.|.++..|...+.. ...+...+..++..... .|.-.|..|+..+...
T Consensus 28 ~~vlt~~e~e~I~~---~~t~~~k~~~LLd~l~~--kg~~a~~~F~~~L~~~ 74 (85)
T PF00619_consen 28 RGVLTEEEYEEIRS---EPTRQDKARKLLDILKR--KGPEAFDIFCQALREN 74 (85)
T ss_dssp TTSSSHHHHHHHHT---SSSHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHc---cCChHHHHHHHHHHHHH--HCHHHHHHHHHHHHhh
Confidence 67788888776554 23344557777777643 4445678888888763
No 295
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=25.49 E-value=60 Score=15.05 Aligned_cols=20 Identities=5% Similarity=-0.105 Sum_probs=10.6
Q ss_pred HHhhCCCCCCCccHHHHHHH
Q 034995 41 IRLGGEDENDGVSSPSFSNS 60 (76)
Q Consensus 41 ~~~~d~~~~~~i~~~ef~~~ 60 (76)
...++.+++|.|....+..+
T Consensus 21 ~~~~~~~~~g~Vpi~~i~~F 40 (61)
T PF05383_consen 21 RSQMDSNPDGWVPISTILSF 40 (61)
T ss_dssp HHHHCTTTTTBEEHHHHTTS
T ss_pred HHHHHhcCCCcEeHHHHHch
Confidence 33445555666665544433
No 296
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.42 E-value=1.1e+02 Score=15.83 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=22.5
Q ss_pred HHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 24 YMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 24 ~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
.++.+|+ +-.++..++...+.++ .-....+..++.....
T Consensus 51 ~lr~~G~--sl~eI~~~l~~~~~~~--~~~~~~~~~~l~~~~~ 89 (116)
T cd04769 51 EARQLGF--TLAELKAIFAGHEGRA--VLPWPHLQQALEDKKQ 89 (116)
T ss_pred HHHHcCC--CHHHHHHHHhccccCC--cCcHHHHHHHHHHHHH
Confidence 3455564 4477888888776443 2334555566655443
No 297
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=25.31 E-value=1.3e+02 Score=16.38 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=29.9
Q ss_pred CCCcccHHHHHHHHHHcCC---------CCCHHHHHHHHHhhCCCCCC-CccHHHHHHH
Q 034995 12 GDGRLSHDDLKSYMNCAGF---------AATDDDIKAMIRLGGEDEND-GVSSPSFSNS 60 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~---------~~~~~~~~~~~~~~d~~~~~-~i~~~ef~~~ 60 (76)
++..|+.+||..++..-.. ....++++++...+...+.+ .++..|-+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 4567778888777765211 24566777777776654444 3777666544
No 298
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=25.23 E-value=2.2e+02 Score=19.13 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhC--CCCCCCccHHHHHHHHHhhc
Q 034995 19 DDLKSYMNCAGFAATDDDIKAMIRLGG--EDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 19 ~el~~~l~~~~~~~~~~~~~~~~~~~d--~~~~~~i~~~ef~~~l~~~~ 65 (76)
.-+...++.+|..++++++..++..+- .+..+.++-+++..++....
T Consensus 332 ~~i~~~l~~~g~~l~~~~~~~~~~~vk~~~~~~~~~~~~~l~~l~~~~~ 380 (494)
T TIGR00973 332 HAFKDRLEELGFKLDDEELDKLFEKFKELADKKKEVTDEDLEALVFEEK 380 (494)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHh
Confidence 446677888899999887877665532 12234799999998886643
No 299
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=24.87 E-value=1.4e+02 Score=16.82 Aligned_cols=27 Identities=11% Similarity=0.327 Sum_probs=23.0
Q ss_pred HhhhccCCCCcccHHHHHHHHHHcCCC
Q 034995 5 FKVMDKDGDGRLSHDDLKSYMNCAGFA 31 (76)
Q Consensus 5 F~~~d~~~~g~i~~~el~~~l~~~~~~ 31 (76)
=..++++....|+.+.+..+|..+|+.
T Consensus 56 neic~~e~KKTIa~EHV~KALe~LgF~ 82 (156)
T KOG0871|consen 56 NEICNKEAKKTIAPEHVIKALENLGFG 82 (156)
T ss_pred HHHHhHHhcccCCHHHHHHHHHHcchH
Confidence 345677888999999999999999886
No 300
>PLN02321 2-isopropylmalate synthase
Probab=24.85 E-value=2.2e+02 Score=19.97 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhCC--CCCCCccHHHHHHHHHhhc
Q 034995 19 DDLKSYMNCAGFAATDDDIKAMIRLGGE--DENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 19 ~el~~~l~~~~~~~~~~~~~~~~~~~d~--~~~~~i~~~ef~~~l~~~~ 65 (76)
.-+...|+.+|..++++++..++..+-. +..+.|+-+++..++....
T Consensus 431 ~~v~~~L~~lG~~l~~~~~~~~~~~vk~la~~~~~v~d~dl~~l~~~~~ 479 (632)
T PLN02321 431 HALKSRLKELGYELDDDELDDVFKRFKAVAEKKKGVTDEDLIALVSDEV 479 (632)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence 4466778888999998888877665421 2335889999999886543
No 301
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=24.66 E-value=1.8e+02 Score=18.50 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhC---CCCCCCccHHHHHHH
Q 034995 19 DDLKSYMNCAGFAATDDDIKAMIRLGG---EDENDGVSSPSFSNS 60 (76)
Q Consensus 19 ~el~~~l~~~~~~~~~~~~~~~~~~~d---~~~~~~i~~~ef~~~ 60 (76)
.-+...++.+|..++++++.++...+- ......|+.+++..+
T Consensus 320 ~~i~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~ 364 (365)
T TIGR02660 320 AALINALAQLGIPLSEEEAAALLPAVRAFATRLKRPLSDAELIAL 364 (365)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHh
Confidence 335666778899999888777655532 222347777776553
No 302
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.51 E-value=1.5e+02 Score=19.92 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 18 HDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 18 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
..++..++++......+++.+++...+- .|..++++|+..+...
T Consensus 296 MGDv~sLvEk~~~~~d~e~a~~~~~kl~---~g~FtL~Df~~Ql~~m 339 (451)
T COG0541 296 MGDVLSLIEKAEEVVDEEEAEKLAEKLK---KGKFTLEDFLEQLEQM 339 (451)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 3455555555544455556666666653 4558888888877654
No 303
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=24.48 E-value=1.2e+02 Score=16.02 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=24.3
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
..|.++.+++..-+..-+-.++..++...+..+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 368889999988776557778888876665544
No 304
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=24.17 E-value=81 Score=13.76 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=8.0
Q ss_pred ccHHHHHHHHHHcCC
Q 034995 16 LSHDDLKSYMNCAGF 30 (76)
Q Consensus 16 i~~~el~~~l~~~~~ 30 (76)
++-.||+.-|...|.
T Consensus 6 LSd~eL~~~L~~~G~ 20 (44)
T smart00540 6 LSDAELRAELKQYGL 20 (44)
T ss_pred cCHHHHHHHHHHcCC
Confidence 445555555555544
No 305
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=24.06 E-value=1.2e+02 Score=15.60 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=18.7
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 034995 14 GRLSHDDLKSYMNCAGFAATDDDIKAMIRL 43 (76)
Q Consensus 14 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 43 (76)
..++..+++.+.+.+| +++.+++.+-..
T Consensus 16 ~~~~~~~wK~faR~lg--lse~~Id~I~~~ 43 (97)
T cd08316 16 DVMTLKDVKKFVRKSG--LSEPKIDEIKLD 43 (97)
T ss_pred HHcCHHHHHHHHHHcC--CCHHHHHHHHHc
Confidence 3566788888888877 555556655433
No 306
>smart00390 GoLoco LGN motif, putative GEFs specific for G-alpha GTPases. GEF specific for Galpha_i proteins
Probab=23.95 E-value=63 Score=12.48 Aligned_cols=14 Identities=29% Similarity=0.202 Sum_probs=8.8
Q ss_pred HHHHHHHHhhccCC
Q 034995 55 PSFSNSLLIATSSS 68 (76)
Q Consensus 55 ~ef~~~l~~~~~~~ 68 (76)
++|+.++.+..+..
T Consensus 2 e~ffelL~r~Qs~R 15 (26)
T smart00390 2 EDLFDLLLRMQSSR 15 (26)
T ss_pred cHHHHHHHHHHhhh
Confidence 46777777765444
No 307
>PHA02102 hypothetical protein
Probab=23.91 E-value=44 Score=15.92 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=11.4
Q ss_pred CCCCCCccHHHHHH
Q 034995 46 EDENDGVSSPSFSN 59 (76)
Q Consensus 46 ~~~~~~i~~~ef~~ 59 (76)
.++++.|.|++|++
T Consensus 34 in~~nev~f~DWLs 47 (72)
T PHA02102 34 INDDNEVRFEDWLS 47 (72)
T ss_pred eCCCCcEeHHHhhc
Confidence 46778999999875
No 308
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=23.76 E-value=1.7e+02 Score=17.44 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=25.5
Q ss_pred cCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 034995 10 KDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRL 43 (76)
Q Consensus 10 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 43 (76)
.|.+|..+..++...+++.+..++.+.+..+...
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~ 87 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVAT 87 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhc
Confidence 4677888888888888887778887766665443
No 309
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=23.64 E-value=1.6e+02 Score=16.89 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=17.3
Q ss_pred HHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 35 DDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 35 ~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
.++..++..+... +.++|++|..++...
T Consensus 4 ~D~~~Ll~~F~~~--~~~~F~~F~~~W~~~ 31 (194)
T PF09808_consen 4 EDIDELLQRFQQA--ESVRFEDFKRLWREM 31 (194)
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHC
Confidence 3456666666432 557778887777653
No 310
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.57 E-value=1.5e+02 Score=16.63 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 20 DLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 20 el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
.+..+++..|...|..-. .++..+.. .+++++-++....+..
T Consensus 12 ~~~~~L~~~GlR~T~qR~-~IL~~l~~-~~~hlSa~eI~~~L~~ 53 (169)
T PRK11639 12 QAEKLCAQRNVRLTPQRL-EVLRLMSL-QPGAISAYDLLDLLRE 53 (169)
T ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHh-cCCCCCHHHHHHHHHh
Confidence 344455555555554321 22222221 2345555555555543
No 311
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=23.26 E-value=97 Score=14.38 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=29.8
Q ss_pred HhhhccCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 5 FKVMDKDGDGRLSHDDLKSYMNCAG-FAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 5 F~~~d~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
|..+.....|.++..+...+-..+. ...+.+-+..++...-.. +..++.=...++..+
T Consensus 2 ~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~~--~~~~~~Yi~~Il~~W 60 (77)
T PF07261_consen 2 FEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYALEN--NKRSFNYIEKILNNW 60 (77)
T ss_dssp HHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC--T--SHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 5556666678888888776655543 245555566666555422 333344333444443
No 312
>PRK13696 hypothetical protein; Provisional
Probab=23.15 E-value=1e+02 Score=14.59 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=10.3
Q ss_pred CCccHHHHHHHHHh
Q 034995 50 DGVSSPSFSNSLLI 63 (76)
Q Consensus 50 ~~i~~~ef~~~l~~ 63 (76)
+..+|.+++.-|..
T Consensus 21 ~~~SFSevi~~L~~ 34 (62)
T PRK13696 21 GDKSFSEVIRELIE 34 (62)
T ss_pred CCCCHHHHHHHHHH
Confidence 44688888887773
No 313
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=23.10 E-value=77 Score=13.18 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHhhCCCCCCCc
Q 034995 32 ATDDDIKAMIRLGGEDENDGV 52 (76)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~~i 52 (76)
.+++++..++...-.+.+|..
T Consensus 13 cs~edL~~L~~~Lt~dkdG~~ 33 (35)
T PF13099_consen 13 CSNEDLKDLVDILTHDKDGKK 33 (35)
T ss_pred CCHHHHHHHHHHHhcCCCCCc
Confidence 456677777766655666653
No 314
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=22.99 E-value=1.9e+02 Score=17.57 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=34.4
Q ss_pred CCCcccHHHHHHHHHHcCC------CCCHHHHHHHHHhhCCCCC-CCccHHHHHHH
Q 034995 12 GDGRLSHDDLKSYMNCAGF------AATDDDIKAMIRLGGEDEN-DGVSSPSFSNS 60 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~------~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~ 60 (76)
+.|.+-...+..++..++. .+...+-..+++.+..+-| +.|+..+-+.+
T Consensus 167 ~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~L 222 (237)
T TIGR03849 167 EKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISL 222 (237)
T ss_pred CCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHH
Confidence 4567777778888877654 2345555668888988888 78888876654
No 315
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=22.84 E-value=1e+02 Score=14.35 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=25.4
Q ss_pred HhhhccCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCCccHH
Q 034995 5 FKVMDKDGDGRLSHDDLKSYMNCA-GFAATDDDIKAMIRLGGEDENDGVSSP 55 (76)
Q Consensus 5 F~~~d~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ 55 (76)
|..+.+...+.++..++..+...+ ....+.+.+...+...-. .+..++.
T Consensus 2 ~~~~e~~~gr~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a~~--~~~~~~~ 51 (73)
T TIGR01446 2 YDFFEENFGRMLSPFEMEDLKYWLDEFGNSPELIKEALKEAVS--NNKANYK 51 (73)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCHH
Confidence 445555555577777765544332 122445556666655432 2445554
No 316
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=22.66 E-value=2.4e+02 Score=18.63 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=31.1
Q ss_pred HhhhccCCCCcccHHHHHHHHHHc----------------CCCCCHHHHHHHHHhhCCCCCCCcc
Q 034995 5 FKVMDKDGDGRLSHDDLKSYMNCA----------------GFAATDDDIKAMIRLGGEDENDGVS 53 (76)
Q Consensus 5 F~~~d~~~~g~i~~~el~~~l~~~----------------~~~~~~~~~~~~~~~~d~~~~~~i~ 53 (76)
+..||..+.+ ++.+.+...|..+ |..++.++++.++..+- ..+.|.
T Consensus 147 Y~Yyd~~~~~-~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~--~r~lip 208 (396)
T COG1448 147 YPYYDAETKG-LDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIK--ERGLIP 208 (396)
T ss_pred eecccccccc-ccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHH--HcCCee
Confidence 4556776555 8888887777753 66788888888776653 344443
No 317
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=22.47 E-value=1.6e+02 Score=19.40 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 32 ATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 32 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
..+++.+++...+- .|..++.+|+..+...
T Consensus 310 ~~~~~~~~~~~~~~---~~~f~l~d~~~q~~~~ 339 (428)
T TIGR00959 310 VDEEEAKKLAEKMK---KGQFDLEDFLEQLRQI 339 (428)
T ss_pred hCHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 34444555555553 4668888888777653
No 318
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=22.38 E-value=74 Score=12.67 Aligned_cols=8 Identities=13% Similarity=0.538 Sum_probs=2.4
Q ss_pred CCHHHHHH
Q 034995 32 ATDDDIKA 39 (76)
Q Consensus 32 ~~~~~~~~ 39 (76)
++.++++.
T Consensus 17 ls~eeir~ 24 (30)
T PF08671_consen 17 LSKEEIRE 24 (30)
T ss_dssp --HHHHHH
T ss_pred CCHHHHHH
Confidence 33344433
No 319
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=22.33 E-value=90 Score=16.56 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=13.6
Q ss_pred CCCCcccHHHHHHHHHH
Q 034995 11 DGDGRLSHDDLKSYMNC 27 (76)
Q Consensus 11 ~~~g~i~~~el~~~l~~ 27 (76)
|.+|.++.++|..++..
T Consensus 6 DtSGSis~~~l~~fl~e 22 (126)
T PF09967_consen 6 DTSGSISDEELRRFLSE 22 (126)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 56789999888887764
No 320
>PRK08136 glycosyl transferase family protein; Provisional
Probab=22.26 E-value=2.2e+02 Score=18.00 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=13.2
Q ss_pred CcccHHHHHHHHHHc-CCCCCHHHHHHHH
Q 034995 14 GRLSHDDLKSYMNCA-GFAATDDDIKAMI 41 (76)
Q Consensus 14 g~i~~~el~~~l~~~-~~~~~~~~~~~~~ 41 (76)
..++.+|-..++..+ ....++.++-.++
T Consensus 18 ~~Lt~eEA~~~~~~il~g~~~~~qi~AfL 46 (317)
T PRK08136 18 RDLDRDTARALYGAMLDGRVPDLELGAIL 46 (317)
T ss_pred CCcCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455555555555543 2334444444433
No 321
>PRK04280 arginine repressor; Provisional
Probab=22.18 E-value=1.6e+02 Score=16.35 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhC----CCCCCC
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAMIRLGG----EDENDG 51 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d----~~~~~~ 51 (76)
.=+.+||...|...|+..++.-+-.-++++. .+++|.
T Consensus 18 I~tQeeL~~~L~~~Gi~vTQATiSRDikeL~lvKv~~~~G~ 58 (148)
T PRK04280 18 IETQDELVDRLREEGFNVTQATVSRDIKELHLVKVPLPDGR 58 (148)
T ss_pred CCCHHHHHHHHHHcCCCeehHHHHHHHHHcCCEEeecCCCc
Confidence 4467899999999999999887766665543 245554
No 322
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=22.18 E-value=1.3e+02 Score=15.54 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=21.2
Q ss_pred HHHHHHHhhCCCCCCCccHHHHHHHHHhhccCC
Q 034995 36 DIKAMIRLGGEDENDGVSSPSFSNSLLIATSSS 68 (76)
Q Consensus 36 ~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~ 68 (76)
.++.++...- +|.|+-+||..-+....+.+
T Consensus 28 ~Vr~LV~~L~---~~~i~~EeF~~~Lq~~lns~ 57 (96)
T PF07531_consen 28 NVRELVQNLV---DGKIEAEEFTSKLQEELNSS 57 (96)
T ss_dssp HHHHHHHHHH---TTSS-HHHHHHHHHHHCTSS
T ss_pred HHHHHHHHHH---cCCCCHHHHHHHHHHHhcCC
Confidence 4566666653 67799999999998876654
No 323
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.17 E-value=1.3e+02 Score=19.86 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=16.8
Q ss_pred HHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 35 DDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 35 ~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
++.+++.+.+- .|..++++|+..+...
T Consensus 313 ~~~~~~~~k~~---~~~f~l~D~~~q~~~i 339 (429)
T TIGR01425 313 DNEKALIEKLK---EGTFTLRDMYEQFQNL 339 (429)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 33444555442 4678888888877653
No 324
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=22.14 E-value=72 Score=18.02 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=15.1
Q ss_pred CHHHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 33 TDDDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 33 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
+..++.+.++.+..++...++.++|-.-+.-.
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVG 114 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACGVG 114 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCC
Confidence 45556655555543334456666665555433
No 325
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=22.12 E-value=1.4e+02 Score=16.45 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=9.5
Q ss_pred CCccHHHHHHHHHhhcc
Q 034995 50 DGVSSPSFSNSLLIATS 66 (76)
Q Consensus 50 ~~i~~~ef~~~l~~~~~ 66 (76)
|.|+...|...+.+...
T Consensus 4 GeLd~kpF~~Ack~k~~ 20 (132)
T PF03469_consen 4 GELDEKPFLNACKRKYP 20 (132)
T ss_pred cccChHHHHHHHHHhcC
Confidence 44555666666655544
No 326
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=22.09 E-value=38 Score=16.87 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=18.6
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 034995 13 DGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGG 45 (76)
Q Consensus 13 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 45 (76)
.|.-+..++-.++..+|-.+-+..++-+++.+.
T Consensus 38 S~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt 70 (88)
T PF15144_consen 38 SGKNPEPDFPKFLNLLGTEIIENAVEFILRSMT 70 (88)
T ss_pred cCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 344445567777777665555544554555543
No 327
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=22.08 E-value=1.3e+02 Score=15.25 Aligned_cols=16 Identities=6% Similarity=0.210 Sum_probs=8.5
Q ss_pred CCCCCHHHHHHHHHhh
Q 034995 29 GFAATDDDIKAMIRLG 44 (76)
Q Consensus 29 ~~~~~~~~~~~~~~~~ 44 (76)
|.++...+++.++..+
T Consensus 51 g~~p~s~evq~l~~~~ 66 (118)
T PF07739_consen 51 GVDPDSPEVQELAERW 66 (118)
T ss_dssp T--TT-HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHH
Confidence 6677777777665543
No 328
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.95 E-value=1.8e+02 Score=16.83 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=34.1
Q ss_pred hhhccCCCCcccHHHHHHHHHHc----------CCCCCHHHHHHHHHhh-CCCCCCCccHHHHHHHHHhhc
Q 034995 6 KVMDKDGDGRLSHDDLKSYMNCA----------GFAATDDDIKAMIRLG-GEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 6 ~~~d~~~~g~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~~-d~~~~~~i~~~ef~~~l~~~~ 65 (76)
+.||...+-+|+.++|..++..- |..++...+-.++-+- ...+...+.- .|+.-+.+.+
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~gedF~V~DAKsgeDiT~sVLtQIIfEeE~k~G~~llpi-~fLrQlI~fY 88 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKEGEDFRVQDAKSGEDITHSVLTQIIFEEENKGGQNLLPI-SFLRQLISFY 88 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhcCCceEEeeccccchhhHHHHHHHHHHHhccCCCccccH-HHHHHHHHHH
Confidence 45778888899999999888752 4455665555554333 3333333332 3444444433
No 329
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=21.93 E-value=1.1e+02 Score=24.51 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=22.6
Q ss_pred HHHhhCCCCCCCccHHHHHHHHHhhc
Q 034995 40 MIRLGGEDENDGVSSPSFSNSLLIAT 65 (76)
Q Consensus 40 ~~~~~d~~~~~~i~~~ef~~~l~~~~ 65 (76)
.+++||+++.|.|+..+|...|....
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k 4087 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK 4087 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc
Confidence 47789999999999999999987754
No 330
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=21.83 E-value=1.6e+02 Score=17.91 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=14.3
Q ss_pred CCCcccHHHHHHHHHHcCCC---CCHHHHHHH
Q 034995 12 GDGRLSHDDLKSYMNCAGFA---ATDDDIKAM 40 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~---~~~~~~~~~ 40 (76)
|-..++.+||+.++..-|.. .+.++++..
T Consensus 216 Gv~~Ls~~EL~~Ac~~RGl~~~~~s~~~lr~~ 247 (268)
T PF07766_consen 216 GVDSLSEEELQDACYERGLRSTGLSEEELREW 247 (268)
T ss_dssp -GGGS-HHHHHHHHHHTT---TT--HHHHHHH
T ss_pred ccccCCHHHHHHHHHHhCCCcCCCCHHHHHHH
Confidence 44567777777777766553 344444443
No 331
>PF09966 DUF2200: Uncharacterized protein conserved in bacteria (DUF2200); InterPro: IPR014580 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3C9P_A.
Probab=21.77 E-value=1.4e+02 Score=15.91 Aligned_cols=35 Identities=14% Similarity=0.357 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHc-CCCCCHHHHHHHHHhhCCCCCCCccHHHHHHH
Q 034995 17 SHDDLKSYMNCA-GFAATDDDIKAMIRLGGEDENDGVSSPSFSNS 60 (76)
Q Consensus 17 ~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 60 (76)
+.+|+.+++..+ | .+.++++..+ +..++|++|..-
T Consensus 24 t~~Evd~vi~WLTG--y~~~~l~~~~-------~~~~~~~~FF~~ 59 (111)
T PF09966_consen 24 TKEEVDQVIRWLTG--YDQEELQAQI-------ESKVTFETFFAQ 59 (111)
T ss_dssp -HHHHHHHHHHHH-----HHHHHHHT-------TS--BHHHHHHT
T ss_pred CHHHHHHHHHHHhc--CCHHHHHHHH-------HcCCCHHHHHHH
Confidence 356666666654 4 3444455442 234788888654
No 332
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=21.76 E-value=87 Score=13.28 Aligned_cols=14 Identities=14% Similarity=-0.071 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhccC
Q 034995 54 SPSFSNSLLIATSS 67 (76)
Q Consensus 54 ~~ef~~~l~~~~~~ 67 (76)
|.+|+.+|.....+
T Consensus 4 Y~~FL~il~~y~~~ 17 (47)
T PF02671_consen 4 YNEFLKILNDYKKG 17 (47)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhc
Confidence 77888888876543
No 333
>PRK11911 flgD flagellar basal body rod modification protein; Provisional
Probab=21.70 E-value=1.2e+02 Score=16.85 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=5.9
Q ss_pred CccHHHHHHHHHh
Q 034995 51 GVSSPSFSNSLLI 63 (76)
Q Consensus 51 ~i~~~ef~~~l~~ 63 (76)
.++.++|+++|..
T Consensus 25 ~L~~d~FLkLLva 37 (140)
T PRK11911 25 TLGKDDFMKLFLT 37 (140)
T ss_pred ccCHHHHHHHHHH
Confidence 3444444444444
No 334
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=21.59 E-value=1.4e+02 Score=15.68 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHH
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSN 59 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 59 (76)
.|+.+.+..+|...|..+....+..+++.+.. ++.++.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G-----kdIeElI~ 55 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED-----VNIEEAIK 55 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 79999999999999998888877777777632 44555543
No 335
>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]
Probab=21.52 E-value=1.4e+02 Score=20.78 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=37.4
Q ss_pred HHhhhccCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCC--CccHHHHHHHHHh
Q 034995 4 VFKVMDKDGDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDEND--GVSSPSFSNSLLI 63 (76)
Q Consensus 4 ~F~~~d~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~--~i~~~ef~~~l~~ 63 (76)
+|+..|.|+.-.++...+.+.|.++.....+ -+.....|+.. .|+|.|...++..
T Consensus 591 lFHqvtedg~p~lDlaHvl~CLNKLDAG~~E-----kI~LvSrDE~t~IIvSY~ELK~~le~ 647 (655)
T KOG3741|consen 591 LFHQVTEDGKPWLDLAHVLQCLNKLDAGIQE-----KILLVSRDELTCIIVSYKELKTILEK 647 (655)
T ss_pred hheEeccCCChhhhHHHHHHHhhhccccchh-----heeEeccCCCcEEEEEHHHHHHHHHH
Confidence 5777888999899999988888887544432 23334333333 5689998887654
No 336
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.52 E-value=1.2e+02 Score=14.70 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=16.8
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHH
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAM 40 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~ 40 (76)
.++..+.+.+.+.+| +++.++..+
T Consensus 8 ~v~~~~Wk~laR~LG--ls~~~I~~i 31 (79)
T cd08784 8 EVPFDQHKRFFRKLG--LSDNEIKVA 31 (79)
T ss_pred HCCHHHHHHHHHHcC--CCHHHHHHH
Confidence 467788888888887 555555554
No 337
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=21.44 E-value=86 Score=13.24 Aligned_cols=19 Identities=16% Similarity=0.452 Sum_probs=11.8
Q ss_pred ccCCCCcccHHHHHHHHHH
Q 034995 9 DKDGDGRLSHDDLKSYMNC 27 (76)
Q Consensus 9 d~~~~g~i~~~el~~~l~~ 27 (76)
|....|-++.++|+.+++.
T Consensus 7 ~g~~~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLISS 25 (45)
T ss_pred CCeEECCcCHHHHHHHHHc
Confidence 4445566777777766654
No 338
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.25 E-value=2.3e+02 Score=17.99 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=22.0
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
.+|...+...|...|..++..-+..++...
T Consensus 24 ~~S~~~la~~L~~~G~~vS~~tV~~lL~~l 53 (311)
T PF07592_consen 24 RKSTRKLAEELRRQGHPVSARTVARLLNRL 53 (311)
T ss_pred eccHHHHHHHHHHcCCCccHHHHHHHHHHc
Confidence 356677777777778888877777777664
No 339
>PLN02641 anthranilate phosphoribosyltransferase
Probab=21.12 E-value=2.4e+02 Score=18.04 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=8.4
Q ss_pred CCCCCHHHHHHHHHhh
Q 034995 29 GFAATDDDIKAMIRLG 44 (76)
Q Consensus 29 ~~~~~~~~~~~~~~~~ 44 (76)
|.+++.+|....+..+
T Consensus 14 g~~Lt~eEa~~~~~~i 29 (343)
T PLN02641 14 GTDLTEEEAEAALDFL 29 (343)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4455555555555444
No 340
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=20.75 E-value=1.6e+02 Score=17.94 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHhhcc
Q 034995 31 AATDDDIKAMIRLGGEDENDGVSSPSFSNSLLIATS 66 (76)
Q Consensus 31 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~ 66 (76)
..|++|++.++..+-.+.....+.++...-+..+.+
T Consensus 224 GFT~~Ev~~ll~~~~~~~~~~~~~~~~~~~lk~wYd 259 (284)
T PF09820_consen 224 GFTEEEVETLLKYYIENLAEEQDREELLEELKEWYD 259 (284)
T ss_pred CcCHHHHHHHHHHHHHHhhhccchHHHHHHHHHHcC
Confidence 467788888887773332222356666666666543
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=20.74 E-value=1.7e+02 Score=19.34 Aligned_cols=27 Identities=4% Similarity=-0.065 Sum_probs=16.1
Q ss_pred HHHHHHHHhhCCCCCCCccHHHHHHHHHhh
Q 034995 35 DDIKAMIRLGGEDENDGVSSPSFSNSLLIA 64 (76)
Q Consensus 35 ~~~~~~~~~~d~~~~~~i~~~ef~~~l~~~ 64 (76)
++.+++.+.+. .|..++++|+..+...
T Consensus 306 ~~~~~~~~~~~---~~~f~l~d~~~q~~~~ 332 (437)
T PRK00771 306 EEEEKDVEKMM---KGKFTLKDMYKQLEAM 332 (437)
T ss_pred HHHHHHHHHHH---cCCcCHHHHHHHHHHH
Confidence 33444554442 4677888888777653
No 342
>PRK10867 signal recognition particle protein; Provisional
Probab=20.63 E-value=1.7e+02 Score=19.31 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=15.5
Q ss_pred CHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 33 TDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 33 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
.+++.+++.+.+- .|..++++|+..+..
T Consensus 312 ~~~~~~~~~~~~~---~g~f~l~d~~~q~~~ 339 (433)
T PRK10867 312 DEEKAEKLAKKLK---KGKFDLEDFLEQLQQ 339 (433)
T ss_pred CHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 3344444554442 356777777776655
No 343
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.56 E-value=1.7e+02 Score=16.02 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 18 HDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 18 ~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
..++...++..|..+|..-.. ++..+. ..+++++-++....+..
T Consensus 5 ~~~~~~~lk~~glr~T~qR~~-vl~~L~-~~~~~~sAeei~~~l~~ 48 (145)
T COG0735 5 LEDAIERLKEAGLRLTPQRLA-VLELLL-EADGHLSAEELYEELRE 48 (145)
T ss_pred HHHHHHHHHHcCCCcCHHHHH-HHHHHH-hcCCCCCHHHHHHHHHH
Confidence 344555555555555544221 222221 22333555555555543
No 344
>KOG4776 consensus Uncharacterized conserved protein BCNT [Function unknown]
Probab=20.51 E-value=1.4e+02 Score=18.08 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=23.9
Q ss_pred HHHHHHhhCCCCCCCccHHHHHHHHHhhccCCHHHHhh
Q 034995 37 IKAMIRLGGEDENDGVSSPSFSNSLLIATSSSKSKLRN 74 (76)
Q Consensus 37 ~~~~~~~~d~~~~~~i~~~ef~~~l~~~~~~~~~el~~ 74 (76)
+..-+..+....+|+|...+|+.-.....-.-.+++|.
T Consensus 190 i~dEL~ihNrgKdGYlerqeFL~R~d~rqfEkeRe~R~ 227 (235)
T KOG4776|consen 190 IEDELDIHNRGKDGYLERQEFLERADYRQFEKERELRL 227 (235)
T ss_pred hHHHHHHhcccccchhHHHHHHHHhhhhHHHHHHHHHH
Confidence 34445566667899999999987664433333345543
No 345
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=20.41 E-value=1.4e+02 Score=15.26 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=14.0
Q ss_pred CccHHHHHHHHHhhccCCHHHHhhh
Q 034995 51 GVSSPSFSNSLLIATSSSKSKLRNS 75 (76)
Q Consensus 51 ~i~~~ef~~~l~~~~~~~~~el~~~ 75 (76)
.++-..|..++.+.+.++.++|.+.
T Consensus 49 ~~t~~sfr~m~~~lt~~ek~eliee 73 (91)
T PF09010_consen 49 EFTQMSFRQMFKRLTQEEKEELIEE 73 (91)
T ss_dssp E--HHHHHHHHHTS-HHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCHHHHHHHHHH
Confidence 5666777777766666655666543
No 346
>PF09687 PRESAN: Plasmodium RESA N-terminal; InterPro: IPR019111 The short, four-helical domain first identified in the Plasmodium export proteins PHISTa and PHISTc [] has been extended to become this six-helical PRESAC domain identified in the P. falciparum-specific RESA-type (Ring-infected erythrocyte surface antigen) proteins in association with the DnaJ domain. Overall, at least 67 proteins have been detected in P. falciparum with complete copies of the PRESAC domain. No versions of this domain were detected in other apicomplexan genera, suggesting that the domain was 'invented' after the divergence of the lineage leading to the genus Plasmodium undergoing a dramatic proliferation only in P. falciparum. A secondary structure-prediction derived from the multiple alignment of the PRESAC family reveals that it is composed of an all-helical fold with six conserved helical segments. There is some evidence it might localise to membranes [].
Probab=20.16 E-value=1.4e+02 Score=15.15 Aligned_cols=30 Identities=13% Similarity=0.250 Sum_probs=22.1
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 034995 15 RLSHDDLKSYMNCAGFAATDDDIKAMIRLG 44 (76)
Q Consensus 15 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 44 (76)
.++..|+...+..++..++..++..++..+
T Consensus 5 ~lt~~ei~~~i~~l~~~~~k~~m~~iw~~~ 34 (129)
T PF09687_consen 5 NLTDEEINKKINSLGEFVSKKDMYNIWNQV 34 (129)
T ss_pred HhhHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 456778888888888778877777666554
No 347
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=20.11 E-value=1.1e+02 Score=14.01 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=10.1
Q ss_pred CCCCCHHHHHHHHHhhC
Q 034995 29 GFAATDDDIKAMIRLGG 45 (76)
Q Consensus 29 ~~~~~~~~~~~~~~~~d 45 (76)
|..++.+++..++..+.
T Consensus 16 G~~i~~~ei~~~L~~lg 32 (71)
T smart00874 16 GLDLSAEEIEEILKRLG 32 (71)
T ss_pred CCCCCHHHHHHHHHHCC
Confidence 55666666666665543
No 348
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=20.11 E-value=1.5e+02 Score=15.44 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHHh
Q 034995 16 LSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLLI 63 (76)
Q Consensus 16 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~~ 63 (76)
++..++..+|...|..+...-+..+++.+.. .+.++.+.-...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-----k~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-----KNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-----CCHHHHHHHHHh
Confidence 9999999999999999998888888877632 455666655443
No 349
>PRK05849 hypothetical protein; Provisional
Probab=20.07 E-value=2.4e+02 Score=20.36 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=24.2
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCccHHHHHHHHH
Q 034995 12 GDGRLSHDDLKSYMNCAGFAATDDDIKAMIRLGGEDENDGVSSPSFSNSLL 62 (76)
Q Consensus 12 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~l~ 62 (76)
..|.++..++..+|+.+ .+++.+....+... |.+++++|+.-+.
T Consensus 471 ~~g~~s~~~~~~f~~s~-~Tv~~~~~~D~~~l------g~l~~~~FL~~YG 514 (783)
T PRK05849 471 EIGALSQEELDAFLNSL-NTVSKELSKDLNSL------GELSKDEFLKRYG 514 (783)
T ss_pred HcCCCCHHHHHHHHHHh-hHhHHHHHHHHHHH------hccCHHHHHHHhC
Confidence 35778888877777764 23333322223222 4466777666554
No 350
>PRK06009 flgD flagellar basal body rod modification protein; Reviewed
Probab=20.01 E-value=1.2e+02 Score=16.76 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=7.8
Q ss_pred CccHHHHHHHHHhhc
Q 034995 51 GVSSPSFSNSLLIAT 65 (76)
Q Consensus 51 ~i~~~ef~~~l~~~~ 65 (76)
.++.++|+++|....
T Consensus 32 ~L~~d~FLkLLvaQL 46 (140)
T PRK06009 32 SVNYDSFLQLLIAQM 46 (140)
T ss_pred ccCHHHHHHHHHHHH
Confidence 355555555555443
No 351
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=20.00 E-value=1.1e+02 Score=16.72 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=12.1
Q ss_pred CCCCccHHHHHHHHHh
Q 034995 48 ENDGVSSPSFSNSLLI 63 (76)
Q Consensus 48 ~~~~i~~~ef~~~l~~ 63 (76)
.+|.|+..+|+..+..
T Consensus 41 rng~IsVreFVr~La~ 56 (131)
T PF00427_consen 41 RNGQISVREFVRALAK 56 (131)
T ss_dssp HTTSS-HHHHHHHHHT
T ss_pred HcCCCcHHHHHHHHHc
Confidence 3788999999988764
Done!