BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034996
         (76 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5D1G6|MTAD_PELTS 5-methylthioadenosine/S-adenosylhomocysteine deaminase
           OS=Pelotomaculum thermopropionicum (strain DSM 13744 /
           JCM 10971 / SI) GN=mtaD PE=3 SV=1
          Length = 433

 Score = 32.7 bits (73), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 22  EMACKPCLEKG--------REAIDQSLNPDYDPDGDADTNIRAPLYPHHPAAAP 67
           E   + CL +G        R+AID+SL+   + +G AD  I A   PH P   P
Sbjct: 139 ESGMRACLSRGMIGVGSGARKAIDESLSFVREWNGGADGRITAMFGPHAPYTCP 192


>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y OS=Homo sapiens
            GN=USP9Y PE=1 SV=2
          Length = 2555

 Score = 31.6 bits (70), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 19   IAIEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRAPLYPHHPAA 65
            + +  AC+ C E+  E  DQ    +++P    D    APLYPH PA+
Sbjct: 2466 MTLAKACELCPEE--EPDDQDAPDEHEPSPSED----APLYPHSPAS 2506


>sp|Q7XJ98|KATAM_ARATH Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana
           GN=KAM1 PE=1 SV=1
          Length = 619

 Score = 28.9 bits (63), Expect = 9.8,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 32  GREAIDQSLN--PDYDPDGDADTNIRAPLYPHHPAAAPS-PSPSDPAV 76
           G   ID+ L   P Y     +  ++R   +P  P AAPS P P +P V
Sbjct: 55  GTSNIDKQLQLQPSYAQSQPSSVSLRVDKFPIEPHAAPSKPPPKEPLV 102


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,635,881
Number of Sequences: 539616
Number of extensions: 1270731
Number of successful extensions: 5325
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5319
Number of HSP's gapped (non-prelim): 13
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)