Query 034996
Match_columns 76
No_of_seqs 35 out of 37
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 08:20:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05782 ECM1: Extracellular m 70.7 3.3 7.1E-05 35.5 2.2 27 1-27 1-27 (544)
2 COG4399 Uncharacterized protei 56.3 11 0.00023 31.2 2.6 29 1-29 1-34 (376)
3 COG4291 Predicted membrane pro 54.1 12 0.00025 29.2 2.4 20 7-26 118-137 (228)
4 PF10958 DUF2759: Protein of u 52.5 13 0.00029 23.0 2.0 15 10-24 29-43 (52)
5 KOG3970 Predicted E3 ubiquitin 52.1 24 0.00052 28.3 3.9 42 3-48 249-290 (299)
6 PF10771 DUF2582: Protein of u 50.1 11 0.00023 23.6 1.4 11 12-22 39-49 (65)
7 PF03302 VSP: Giardia variant- 43.3 15 0.00032 29.0 1.5 16 5-21 374-389 (397)
8 KOG4304 Transcriptional repres 42.3 9.4 0.0002 29.0 0.3 18 24-41 34-52 (250)
9 PF03672 UPF0154: Uncharacteri 41.2 50 0.0011 21.0 3.4 24 8-31 5-28 (64)
10 PHA00979 putative major coat p 40.3 21 0.00045 23.8 1.6 23 2-27 44-66 (77)
11 PRK14474 F0F1 ATP synthase sub 38.6 44 0.00095 24.8 3.3 24 9-32 11-34 (250)
12 PRK09272 hypothetical protein; 38.4 27 0.00058 23.8 2.0 25 2-26 28-52 (109)
13 CHL00118 atpG ATP synthase CF0 36.7 53 0.0011 22.3 3.2 32 8-39 27-61 (156)
14 PF07077 DUF1345: Protein of u 36.0 54 0.0012 23.5 3.3 22 5-26 83-104 (180)
15 PRK09835 sensor kinase CusS; P 34.3 1E+02 0.0022 22.6 4.6 30 8-38 193-222 (482)
16 PF04186 FxsA: FxsA cytoplasmi 34.2 89 0.0019 20.9 4.0 41 2-42 23-63 (119)
17 PF11833 DUF3353: Protein of u 34.0 43 0.00092 24.5 2.6 17 4-20 140-156 (194)
18 PF00430 ATP-synt_B: ATP synth 33.9 71 0.0015 20.1 3.3 24 8-31 4-27 (132)
19 PF04834 Adeno_E3_14_5: Early 33.0 1.3E+02 0.0027 20.7 4.6 47 13-65 31-77 (97)
20 TIGR01144 ATP_synt_b ATP synth 33.0 57 0.0012 21.4 2.8 21 11-31 3-23 (147)
21 PF02093 Gag_p30: Gag P30 core 32.7 28 0.00061 26.5 1.5 21 28-50 143-163 (211)
22 PF01102 Glycophorin_A: Glycop 32.2 74 0.0016 22.0 3.4 39 7-46 67-105 (122)
23 PRK11367 hypothetical protein; 32.0 57 0.0012 26.9 3.2 43 4-47 3-53 (476)
24 PF06295 DUF1043: Protein of u 31.8 57 0.0012 22.0 2.7 20 8-27 4-23 (128)
25 PF04612 T2SM: Type II secreti 31.4 16 0.00034 24.0 0.0 27 8-34 19-45 (160)
26 PF00672 HAMP: HAMP domain; I 30.8 65 0.0014 17.8 2.5 33 5-38 4-36 (70)
27 PF06097 DUF945: Bacterial pro 30.7 55 0.0012 24.6 2.8 21 1-21 1-21 (460)
28 COG3748 Predicted membrane pro 30.7 65 0.0014 27.0 3.4 22 8-29 121-142 (407)
29 PF06103 DUF948: Bacterial pro 30.5 1.3E+02 0.0029 18.4 4.1 29 10-38 4-37 (90)
30 PF10883 DUF2681: Protein of u 30.3 81 0.0018 20.9 3.2 19 5-23 7-25 (87)
31 PRK14471 F0F1 ATP synthase sub 29.9 1.1E+02 0.0023 20.7 3.8 23 9-31 14-36 (164)
32 TIGR01386 cztS_silS_copS heavy 29.7 1.4E+02 0.003 21.5 4.6 29 9-38 173-201 (457)
33 PRK10893 lipopolysaccharide ex 29.6 43 0.00093 24.0 2.0 24 1-24 1-25 (192)
34 PF06181 DUF989: Protein of un 29.5 58 0.0013 26.2 2.8 21 7-27 123-143 (300)
35 PRK08475 F0F1 ATP synthase sub 28.9 1.1E+02 0.0024 21.2 3.8 23 10-32 29-51 (167)
36 PRK13461 F0F1 ATP synthase sub 28.6 1.2E+02 0.0025 20.4 3.8 24 9-32 11-34 (159)
37 PF14155 DUF4307: Domain of un 28.3 64 0.0014 21.4 2.5 18 5-22 10-27 (112)
38 PRK14473 F0F1 ATP synthase sub 28.1 1.2E+02 0.0026 20.5 3.9 23 10-32 15-37 (164)
39 COG3771 Predicted membrane pro 27.9 79 0.0017 21.9 2.9 18 7-24 46-63 (97)
40 PRK02898 cobalt transport prot 27.7 1.2E+02 0.0027 20.7 3.8 18 30-48 38-55 (100)
41 PRK07353 F0F1 ATP synthase sub 27.6 1.3E+02 0.0028 19.5 3.9 25 8-32 10-34 (140)
42 PF14990 DUF4516: Domain of un 27.0 84 0.0018 19.0 2.6 27 4-30 11-37 (47)
43 PF12072 DUF3552: Domain of un 27.0 1.9E+02 0.0041 20.6 4.9 30 5-34 5-34 (201)
44 PF09849 DUF2076: Uncharacteri 26.9 52 0.0011 25.1 2.1 23 2-25 140-162 (247)
45 CHL00019 atpF ATP synthase CF0 26.7 1.1E+02 0.0023 21.3 3.5 30 10-39 31-63 (184)
46 PRK13453 F0F1 ATP synthase sub 26.0 1.3E+02 0.0029 20.7 3.8 23 9-31 24-46 (173)
47 PF08041 PetM: PetM family of 26.0 1.2E+02 0.0026 17.0 2.9 20 3-22 7-26 (31)
48 PF10999 DUF2839: Protein of u 25.7 55 0.0012 20.9 1.7 19 5-23 42-60 (68)
49 PF09650 PHA_gran_rgn: Putativ 25.4 39 0.00083 21.6 1.0 21 16-41 64-84 (87)
50 PRK09467 envZ osmolarity senso 25.0 1.9E+02 0.0041 21.0 4.6 30 8-38 161-190 (435)
51 PF15103 G0-G1_switch_2: G0/G1 24.9 76 0.0016 22.0 2.4 22 7-30 31-52 (102)
52 PRK05346 Na(+)-translocating N 24.8 78 0.0017 24.1 2.7 17 17-34 236-252 (256)
53 PRK05759 F0F1 ATP synthase sub 24.6 1.5E+02 0.0034 19.4 3.8 24 9-32 10-33 (156)
54 PF10518 TAT_signal: TAT (twin 24.5 54 0.0012 17.0 1.3 17 4-20 8-24 (26)
55 PRK14475 F0F1 ATP synthase sub 24.5 1.1E+02 0.0024 20.9 3.2 20 21-40 28-50 (167)
56 PRK07352 F0F1 ATP synthase sub 24.2 95 0.0021 21.3 2.8 31 10-40 26-59 (174)
57 PF05795 Plasmodium_Vir: Plasm 24.2 64 0.0014 23.0 2.0 40 4-45 285-324 (354)
58 PF11286 DUF3087: Protein of u 24.0 1.1E+02 0.0023 22.6 3.2 25 9-33 56-80 (165)
59 PF12406 DUF3664: Surface prot 23.9 52 0.0011 22.8 1.5 22 37-63 1-23 (100)
60 COG0711 AtpF F0F1-type ATP syn 23.7 1.8E+02 0.004 20.0 4.2 24 9-32 12-35 (161)
61 PRK13460 F0F1 ATP synthase sub 23.6 1.2E+02 0.0027 20.8 3.3 31 9-39 22-55 (173)
62 PF06305 DUF1049: Protein of u 23.5 1.6E+02 0.0034 16.8 4.4 13 12-24 30-42 (68)
63 PF07297 DPM2: Dolichol phosph 23.5 1.2E+02 0.0025 19.9 3.0 28 4-31 6-33 (78)
64 PRK14472 F0F1 ATP synthase sub 23.4 1.6E+02 0.0034 20.2 3.8 23 9-31 24-46 (175)
65 PF00067 p450: Cytochrome P450 23.4 2.2E+02 0.0047 19.7 4.4 30 11-40 277-307 (463)
66 PF10130 PIN_2: PIN domain; I 22.9 60 0.0013 22.2 1.6 24 22-50 73-96 (133)
67 PF06951 PLA2G12: Group XII se 22.4 73 0.0016 23.7 2.1 24 13-36 151-174 (184)
68 PF05440 MtrB: Tetrahydrometha 21.8 81 0.0018 21.5 2.1 20 29-48 42-61 (97)
69 COG0772 FtsW Bacterial cell di 21.7 2.2E+02 0.0047 22.7 4.7 25 22-49 210-234 (381)
70 PRK07234 putative monovalent c 21.5 83 0.0018 25.2 2.4 26 11-36 430-455 (470)
71 PF11712 Vma12: Endoplasmic re 21.3 1.1E+02 0.0025 20.5 2.7 18 8-25 87-104 (142)
72 KOG4007 Uncharacterized conser 21.1 1.9E+02 0.0041 22.7 4.1 32 9-41 141-172 (229)
73 COG1766 fliF Flagellar basal b 21.0 1.4E+02 0.0031 25.2 3.8 45 3-48 444-488 (545)
74 PRK11677 hypothetical protein; 21.0 1.4E+02 0.003 21.0 3.2 20 4-23 4-23 (134)
75 PRK00965 tetrahydromethanopter 20.7 84 0.0018 21.4 2.0 20 29-48 43-62 (96)
76 PF13991 BssS: BssS protein fa 20.3 55 0.0012 21.3 0.9 23 16-39 39-61 (73)
77 PF11189 DUF2973: Protein of u 20.2 1.5E+02 0.0033 18.4 2.9 11 13-23 20-30 (65)
78 PF05434 Tmemb_9: TMEM9; Inte 20.2 3.5E+02 0.0075 19.7 5.1 25 8-32 61-85 (149)
No 1
>PF05782 ECM1: Extracellular matrix protein 1 (ECM1); InterPro: IPR008605 This family consists of several eukaryotic extracellular matrix protein 1 (ECM1) sequences. ECM1 has been shown to regulate endochondral bone formation, stimulate the proliferation of endothelial cells and induce angiogenesis. Mutations in the ECM1 gene can cause lipoid proteinosis, a disorder which causes generalised thickening of skin, mucosae and certain viscera. Classical features include beaded eyelid papules and laryngeal infiltration leading to hoarseness [].; GO: 0005576 extracellular region
Probab=70.69 E-value=3.3 Score=35.48 Aligned_cols=27 Identities=22% Similarity=0.237 Sum_probs=26.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhhh
Q 034996 1 MAAITVAIIAIAGVVLGWIAIEMACKP 27 (76)
Q Consensus 1 MgAiksavVVvgaLAlGWlaIElAfKP 27 (76)
||++..|++|++-||||=.|-|=+|||
T Consensus 1 MGt~srAALvLacLAvaSaASeGg~k~ 27 (544)
T PF05782_consen 1 MGTMSRAALVLACLAVASAASEGGFKA 27 (544)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999997
No 2
>COG4399 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.32 E-value=11 Score=31.17 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=19.6
Q ss_pred CchhhHH--HHHHHHHHH---HHHHHHHhhhhhH
Q 034996 1 MAAITVA--IIAIAGVVL---GWIAIEMACKPCL 29 (76)
Q Consensus 1 MgAiksa--vVVvgaLAl---GWlaIElAfKP~L 29 (76)
|+++.+= .+|+||.+= -|+||.|-|+||=
T Consensus 1 ms~l~~~l~MiViGgiIG~iTN~lAIkMLFRPyk 34 (376)
T COG4399 1 MSALFTLLFMIVIGGIIGGITNDLAIKMLFRPYK 34 (376)
T ss_pred CcHHHHHHHHHHHHHHHHHHhHHHHHHHHhccch
Confidence 5555553 456676543 3788999999984
No 3
>COG4291 Predicted membrane protein [Function unknown]
Probab=54.09 E-value=12 Score=29.17 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 034996 7 AIIAIAGVVLGWIAIEMACK 26 (76)
Q Consensus 7 avVVvgaLAlGWlaIElAfK 26 (76)
-.+.+..+++||++|.+-+-
T Consensus 118 l~~a~~sV~lgWltIh~m~a 137 (228)
T COG4291 118 LGFALASVALGWLTIHMMTA 137 (228)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45778889999999998764
No 4
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=52.48 E-value=13 Score=23.02 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHh
Q 034996 10 AIAGVVLGWIAIEMA 24 (76)
Q Consensus 10 VvgaLAlGWlaIElA 24 (76)
++..++|||++|-.-
T Consensus 29 ~~t~~VFGwFtimTi 43 (52)
T PF10958_consen 29 LVTVAVFGWFTIMTI 43 (52)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455678999998754
No 5
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.08 E-value=24 Score=28.26 Aligned_cols=42 Identities=38% Similarity=0.481 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHhhhcCCCCCCCCC
Q 034996 3 AITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDG 48 (76)
Q Consensus 3 AiksavVVvgaLAlGWlaIElAfKP~Ldk~R~AidrSldP~~DPDd 48 (76)
+.|.+.+++-.-+|+.++|-+..|= -+|.+-|.| ||+.||--
T Consensus 249 ~~~ra~fli~lgvLafi~~i~lM~r---lGr~g~ds~-Dpn~dP~~ 290 (299)
T KOG3970|consen 249 AKKRALFLIFLGVLAFITIIMLMKR---LGRSGEDSS-DPNFDPMA 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hcccccccC-CCCCCCCC
Confidence 3455666655556666666554441 245555555 89888853
No 6
>PF10771 DUF2582: Protein of unknown function (DUF2582); InterPro: IPR019707 This entry represents conserved proteins found in bacteria and archaea. The function is not known. ; PDB: 2L02_B 2L01_A.
Probab=50.14 E-value=11 Score=23.61 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q 034996 12 AGVVLGWIAIE 22 (76)
Q Consensus 12 gaLAlGWlaIE 22 (76)
..+|+|||+=|
T Consensus 39 ~~~AiGWLarE 49 (65)
T PF10771_consen 39 VYLAIGWLARE 49 (65)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhcc
Confidence 46899999743
No 7
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=43.32 E-value=15 Score=28.98 Aligned_cols=16 Identities=19% Similarity=0.700 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 034996 5 TVAIIAIAGVVLGWIAI 21 (76)
Q Consensus 5 ksavVVvgaLAlGWlaI 21 (76)
..+|||||+|+ |.|-.
T Consensus 374 vavvvvVgglv-GfLcW 389 (397)
T PF03302_consen 374 VAVVVVVGGLV-GFLCW 389 (397)
T ss_pred ehhHHHHHHHH-HHHhh
Confidence 34567888775 54443
No 8
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=42.26 E-value=9.4 Score=28.98 Aligned_cols=18 Identities=44% Similarity=0.648 Sum_probs=14.0
Q ss_pred hhhhhHHHhH-HHhhhcCC
Q 034996 24 ACKPCLEKGR-EAIDQSLN 41 (76)
Q Consensus 24 AfKP~Ldk~R-~AidrSld 41 (76)
..||.|||-| +-|+++||
T Consensus 34 ~~Kpl~EKkRRaRIN~~L~ 52 (250)
T KOG4304|consen 34 VRKPLLEKKRRARINRCLD 52 (250)
T ss_pred hcchhHHHHHHHHHHHHHH
Confidence 5789999887 55888876
No 9
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=41.16 E-value=50 Score=20.96 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH
Q 034996 8 IIAIAGVVLGWIAIEMACKPCLEK 31 (76)
Q Consensus 8 vVVvgaLAlGWlaIElAfKP~Ldk 31 (76)
+..++|++.||+...--||=+|.+
T Consensus 5 lali~G~~~Gff~ar~~~~k~l~~ 28 (64)
T PF03672_consen 5 LALIVGAVIGFFIARKYMEKQLKE 28 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999888777777754
No 10
>PHA00979 putative major coat protein
Probab=40.31 E-value=21 Score=23.77 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=16.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhh
Q 034996 2 AAITVAIIAIAGVVLGWIAIEMACKP 27 (76)
Q Consensus 2 gAiksavVVvgaLAlGWlaIElAfKP 27 (76)
+.+++.++++|+++.| |-+|||=
T Consensus 44 sGvaa~V~a~Gv~iIG---Ia~Afk~ 66 (77)
T PHA00979 44 SGVATKIGAAGLVIVG---ITMAYKS 66 (77)
T ss_pred hhHHHHHHHhhhHhhh---hhhhhee
Confidence 3567778888888776 7788873
No 11
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=38.60 E-value=44 Score=24.82 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHh
Q 034996 9 IAIAGVVLGWIAIEMACKPCLEKG 32 (76)
Q Consensus 9 VVvgaLAlGWlaIElAfKP~Ldk~ 32 (76)
-++--++|.||..-+.|||.++-.
T Consensus 11 qiInFlILv~lL~~fl~kPi~~~l 34 (250)
T PRK14474 11 QIINFLILVYLLRRFLYKPIIQVM 34 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999987543
No 12
>PRK09272 hypothetical protein; Provisional
Probab=38.37 E-value=27 Score=23.81 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhh
Q 034996 2 AAITVAIIAIAGVVLGWIAIEMACK 26 (76)
Q Consensus 2 gAiksavVVvgaLAlGWlaIElAfK 26 (76)
|++--++=++..+++.|+.+|-.=.
T Consensus 28 ggliAaLPLvs~l~liwl~~e~~~~ 52 (109)
T PRK09272 28 GGLIAALPLVSLLSLIWLYVEGQDD 52 (109)
T ss_pred HHHHHHhHHHHHHHHHHHHhccCCh
Confidence 5666677788999999999986433
No 13
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=36.75 E-value=53 Score=22.29 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH---HHhHHHhhhc
Q 034996 8 IIAIAGVVLGWIAIEMACKPCL---EKGREAIDQS 39 (76)
Q Consensus 8 vVVvgaLAlGWlaIElAfKP~L---dk~R~AidrS 39 (76)
+.++.-++|-|+.--+.|||+. ++=++.|.++
T Consensus 27 ~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~ 61 (156)
T CHL00118 27 LMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKN 61 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999984 4444555544
No 14
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=36.00 E-value=54 Score=23.47 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 034996 5 TVAIIAIAGVVLGWIAIEMACK 26 (76)
Q Consensus 5 ksavVVvgaLAlGWlaIElAfK 26 (76)
...++.++++++.|+.+.+.|-
T Consensus 83 ~~~~la~~tv~~sW~~ih~~FA 104 (180)
T PF07077_consen 83 LHIALALATVVLSWLLIHTVFA 104 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888999999999995
No 15
>PRK09835 sensor kinase CusS; Provisional
Probab=34.27 E-value=1e+02 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhHHHhhh
Q 034996 8 IIAIAGVVLGWIAIEMACKPCLEKGREAIDQ 38 (76)
Q Consensus 8 vVVvgaLAlGWlaIElAfKP~Ldk~R~Aidr 38 (76)
++++..++++|+.+....||+ .+..+++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~pl-~~l~~~~~~ 222 (482)
T PRK09835 193 VISLLIVFIVLLAVHKGHAPI-RSVSRQIQN 222 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 344456778899999999998 455555554
No 16
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=34.18 E-value=89 Score=20.95 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=30.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHhhhcCCC
Q 034996 2 AAITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNP 42 (76)
Q Consensus 2 gAiksavVVvgaLAlGWlaIElAfKP~Ldk~R~AidrSldP 42 (76)
|..-+-+++++..++|+..+.-...=.+.+.|+++.+--.|
T Consensus 23 G~~~tll~vi~t~~lG~~llr~~g~~~~~~~~~~~~~g~~p 63 (119)
T PF04186_consen 23 GFLWTLLLVILTAVLGIWLLRRQGRRALRRLQQSLRQGEMP 63 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 34455667888888898888887777888888888765344
No 17
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=33.97 E-value=43 Score=24.45 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 034996 4 ITVAIIAIAGVVLGWIA 20 (76)
Q Consensus 4 iksavVVvgaLAlGWla 20 (76)
.|+..+.+|+|++||+.
T Consensus 140 ~rA~~~~~~~L~~G~~l 156 (194)
T PF11833_consen 140 GRAFLWTLGGLVVGLIL 156 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778889999999975
No 18
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=33.90 E-value=71 Score=20.06 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHH
Q 034996 8 IIAIAGVVLGWIAIEMACKPCLEK 31 (76)
Q Consensus 8 vVVvgaLAlGWlaIElAfKP~Ldk 31 (76)
+.++.-++|.|+..-+.|||...-
T Consensus 4 ~~~i~Flil~~~l~~~~~~pi~~~ 27 (132)
T PF00430_consen 4 WQLINFLILFFLLNKFLYKPIKKF 27 (132)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999998754
No 19
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=32.95 E-value=1.3e+02 Score=20.68 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhhhHHHhHHHhhhcCCCCCCCCCCcccccccCCCCCCCCC
Q 034996 13 GVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDGDADTNIRAPLYPHHPAA 65 (76)
Q Consensus 13 aLAlGWlaIElAfKP~Ldk~R~AidrSldP~~DPDd~~~~~~~~p~~~~~p~~ 65 (76)
+++|.--.+-++--|+|+-+=.+.+.+ |-..+|+. .+-|+++..|.+
T Consensus 31 ~~v~~~t~~~l~iYp~f~~gWn~~~~~-d~P~~P~~-----~~~p~~~~~p~P 77 (97)
T PF04834_consen 31 VLVFCSTFFSLAIYPCFDFGWNHPFAF-DLPVYPSP-----ASIPLQPPIPQP 77 (97)
T ss_pred HHHHHHHHHHHhhhheeeccccCcccc-cCCCCCCc-----ccCCCCCCCCCC
Confidence 444444445566679999998888776 66677772 234565444444
No 20
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=32.95 E-value=57 Score=21.38 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHH
Q 034996 11 IAGVVLGWIAIEMACKPCLEK 31 (76)
Q Consensus 11 vgaLAlGWlaIElAfKP~Ldk 31 (76)
+.-++|-|+..-++|||..+-
T Consensus 3 i~Flil~~il~~~~~~pi~~~ 23 (147)
T TIGR01144 3 ISFILLVWFCMKYVWPPLAKA 23 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 445788899999999997653
No 21
>PF02093 Gag_p30: Gag P30 core shell protein; InterPro: IPR003036 P30 is essential for viral assembly []. Cleavage of P70 in vitro can be accompanied by a shift from a concentrically coiled internal strand ("immature") to a collapsed ("mature") form of the virus core [].; GO: 0019068 virion assembly; PDB: 3BP9_U 1U7K_D 2Y4Z_A 1BM4_A.
Probab=32.71 E-value=28 Score=26.54 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=11.7
Q ss_pred hHHHhHHHhhhcCCCCCCCCCCc
Q 034996 28 CLEKGREAIDQSLNPDYDPDGDA 50 (76)
Q Consensus 28 ~Ldk~R~AidrSldP~~DPDd~~ 50 (76)
|||+.++|+.+. ..+||++++
T Consensus 143 FLeRL~ea~r~y--Tp~dP~~~~ 163 (211)
T PF02093_consen 143 FLERLREAYRKY--TPFDPESPE 163 (211)
T ss_dssp HHHHHHHHHHHT--S--------
T ss_pred HHHHHHHHHHhc--CCCCCCCCc
Confidence 899999999987 468999876
No 22
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.17 E-value=74 Score=22.04 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHHHhhhcCCCCCCC
Q 034996 7 AIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDP 46 (76)
Q Consensus 7 avVVvgaLAlGWlaIElAfKP~Ldk~R~AidrSldP~~DP 46 (76)
+.|++|++|=.=+.| +..-=|+.|.|..-....+|...+
T Consensus 67 ~~Ii~gv~aGvIg~I-lli~y~irR~~Kk~~~~~~p~P~~ 105 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII-LLISYCIRRLRKKSSSDVQPLPEE 105 (122)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHS-------------
T ss_pred eehhHHHHHHHHHHH-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 556666655443333 222224555555433344453444
No 23
>PRK11367 hypothetical protein; Provisional
Probab=31.98 E-value=57 Score=26.86 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHH--------HHHhhhhhHHHhHHHhhhcCCCCCCCC
Q 034996 4 ITVAIIAIAGVVLGWIA--------IEMACKPCLEKGREAIDQSLNPDYDPD 47 (76)
Q Consensus 4 iksavVVvgaLAlGWla--------IElAfKP~Ldk~R~AidrSldP~~DPD 47 (76)
-|||+-|+.+|+.+|.. ||--+.-.++++-+.+.++ -|.++-.
T Consensus 3 kKsa~gVIVaLga~wtGgsWYTGk~iE~~~~~~v~~~N~~l~~~-~p~~~~~ 53 (476)
T PRK11367 3 RKSATGVIVALAVIWGGGTWYTGTQIQPGVEKFIKDFNDAKKKG-EHAYDMT 53 (476)
T ss_pred ccchhhhhhhhhhhhccccceechHHHHHHHHHHHHHHHHHHhc-CCCcCce
Confidence 36688888888888874 8999999999999988887 6776644
No 24
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=31.77 E-value=57 Score=21.99 Aligned_cols=20 Identities=15% Similarity=0.444 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 034996 8 IIAIAGVVLGWIAIEMACKP 27 (76)
Q Consensus 8 vVVvgaLAlGWlaIElAfKP 27 (76)
+..+.|+++||+...+..+-
T Consensus 4 i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 45667789999998886655
No 25
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=31.35 E-value=16 Score=24.04 Aligned_cols=27 Identities=19% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhHH
Q 034996 8 IIAIAGVVLGWIAIEMACKPCLEKGRE 34 (76)
Q Consensus 8 vVVvgaLAlGWlaIElAfKP~Ldk~R~ 34 (76)
+++.|++++..+...+.+.|.+++..+
T Consensus 19 l~~~~~~l~~~l~~~~~~~P~~~~~~~ 45 (160)
T PF04612_consen 19 LLVLGVVLLLALLYLLLWQPLLERRDQ 45 (160)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666667779999877654
No 26
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=30.77 E-value=65 Score=17.83 Aligned_cols=33 Identities=18% Similarity=0.447 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHhhh
Q 034996 5 TVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQ 38 (76)
Q Consensus 5 ksavVVvgaLAlGWlaIElAfKP~Ldk~R~Aidr 38 (76)
-..++++.+++++|+...-..+|. .+.++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~i~~pl-~~l~~~~~~ 36 (70)
T PF00672_consen 4 LFLIILLLSLLLAWLLARRITRPL-RRLSDAMQR 36 (70)
T ss_dssp HHHHHHHHHHHHHHH--HTTCCCH-HHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 346677788889999999999995 444444444
No 27
>PF06097 DUF945: Bacterial protein of unknown function (DUF945); InterPro: IPR010352 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.73 E-value=55 Score=24.61 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=12.1
Q ss_pred CchhhHHHHHHHHHHHHHHHH
Q 034996 1 MAAITVAIIAIAGVVLGWIAI 21 (76)
Q Consensus 1 MgAiksavVVvgaLAlGWlaI 21 (76)
|-+++-+++|+++|+.+|+..
T Consensus 1 MKK~~~~~~~v~~l~~~~~g~ 21 (460)
T PF06097_consen 1 MKKSTIALGVVVALVAAWLGA 21 (460)
T ss_pred CCchHHHHHHHHHHHHHHHHH
Confidence 555445566666666666554
No 28
>COG3748 Predicted membrane protein [Function unknown]
Probab=30.72 E-value=65 Score=26.96 Aligned_cols=22 Identities=36% Similarity=0.825 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q 034996 8 IIAIAGVVLGWIAIEMACKPCL 29 (76)
Q Consensus 8 vVVvgaLAlGWlaIElAfKP~L 29 (76)
.+-++.|++||+.-++-||--|
T Consensus 121 ~~~iAsl~~GW~vYd~lC~s~l 142 (407)
T COG3748 121 AISIASLALGWFVYDALCRSPL 142 (407)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 4567899999999999999333
No 29
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=30.54 E-value=1.3e+02 Score=18.36 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHh-----hhhhHHHhHHHhhh
Q 034996 10 AIAGVVLGWIAIEMA-----CKPCLEKGREAIDQ 38 (76)
Q Consensus 10 VvgaLAlGWlaIElA-----fKP~Ldk~R~Aidr 38 (76)
++.|++|..|.|-++ .++-|++.++.+++
T Consensus 4 lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~ 37 (90)
T PF06103_consen 4 LIAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDT 37 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555443 24455555544443
No 30
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=30.33 E-value=81 Score=20.88 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 034996 5 TVAIIAIAGVVLGWIAIEM 23 (76)
Q Consensus 5 ksavVVvgaLAlGWlaIEl 23 (76)
..+++++.++++||+.+.+
T Consensus 7 v~~~~~v~~~i~~y~~~k~ 25 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKV 25 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466667777788877654
No 31
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=29.95 E-value=1.1e+02 Score=20.73 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHH
Q 034996 9 IAIAGVVLGWIAIEMACKPCLEK 31 (76)
Q Consensus 9 VVvgaLAlGWlaIElAfKP~Ldk 31 (76)
.++.-++|-|+.--+.|||..+-
T Consensus 14 ~~i~Flil~~ll~~~l~~pi~~~ 36 (164)
T PRK14471 14 QTILFLILLLLLAKFAWKPILGA 36 (164)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34566788899999999997653
No 32
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=29.73 E-value=1.4e+02 Score=21.48 Aligned_cols=29 Identities=14% Similarity=0.408 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhHHHhhh
Q 034996 9 IAIAGVVLGWIAIEMACKPCLEKGREAIDQ 38 (76)
Q Consensus 9 VVvgaLAlGWlaIElAfKP~Ldk~R~Aidr 38 (76)
+++.+++++|+....-.||. .+..+.+.+
T Consensus 173 ~~~~~~~~~~~~~r~i~~pl-~~l~~~~~~ 201 (457)
T TIGR01386 173 LVLLTALLGWWITRLGLEPL-RRLSAVAAR 201 (457)
T ss_pred HHHHHHHHHHHHHHHHhhHH-HHHHHHHHH
Confidence 44455667777777778884 445555554
No 33
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=29.57 E-value=43 Score=24.05 Aligned_cols=24 Identities=29% Similarity=0.255 Sum_probs=14.9
Q ss_pred CchhhHH-HHHHHHHHHHHHHHHHh
Q 034996 1 MAAITVA-IIAIAGVVLGWIAIEMA 24 (76)
Q Consensus 1 MgAiksa-vVVvgaLAlGWlaIElA 24 (76)
|..++.- .++++.++++|++..+.
T Consensus 1 m~~~~~~~~~il~~~~l~l~~W~l~ 25 (192)
T PRK10893 1 MSKTRRWVIILLALIALVLIGWNLA 25 (192)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhcc
Confidence 4545554 56666677777776655
No 34
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.47 E-value=58 Score=26.16 Aligned_cols=21 Identities=29% Similarity=0.825 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 034996 7 AIIAIAGVVLGWIAIEMACKP 27 (76)
Q Consensus 7 avVVvgaLAlGWlaIElAfKP 27 (76)
-.+.+|.|++||+.-+..||-
T Consensus 123 i~isl~~l~~gWlvYd~lCrs 143 (300)
T PF06181_consen 123 IAISLGSLVLGWLVYDGLCRS 143 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 457789999999999999985
No 35
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=28.85 E-value=1.1e+02 Score=21.20 Aligned_cols=23 Identities=22% Similarity=0.036 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHh
Q 034996 10 AIAGVVLGWIAIEMACKPCLEKG 32 (76)
Q Consensus 10 VvgaLAlGWlaIElAfKP~Ldk~ 32 (76)
++.-++|-|+..-++|||..+-.
T Consensus 29 ~inflil~~lL~~fl~kPi~~~l 51 (167)
T PRK08475 29 TINFLIFVGILWYFAAKPLKNFY 51 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888999999999986543
No 36
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=28.57 E-value=1.2e+02 Score=20.42 Aligned_cols=24 Identities=13% Similarity=-0.104 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHh
Q 034996 9 IAIAGVVLGWIAIEMACKPCLEKG 32 (76)
Q Consensus 9 VVvgaLAlGWlaIElAfKP~Ldk~ 32 (76)
.++.-++|-|+..-++|||..+-.
T Consensus 11 ~~inF~il~~iL~~f~~kpi~~~l 34 (159)
T PRK13461 11 TIINFIILLLILKHFFFDKIKAVI 34 (159)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345667888999999999976543
No 37
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=28.35 E-value=64 Score=21.39 Aligned_cols=18 Identities=22% Similarity=0.708 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 034996 5 TVAIIAIAGVVLGWIAIE 22 (76)
Q Consensus 5 ksavVVvgaLAlGWlaIE 22 (76)
-..++++++++++|+...
T Consensus 10 ~~v~~vv~~~~~~w~~~~ 27 (112)
T PF14155_consen 10 GAVLVVVAGAVVAWFGYS 27 (112)
T ss_pred HHHHHHHHHHHHhHhhhh
Confidence 345677777788886554
No 38
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=28.10 E-value=1.2e+02 Score=20.45 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHh
Q 034996 10 AIAGVVLGWIAIEMACKPCLEKG 32 (76)
Q Consensus 10 VvgaLAlGWlaIElAfKP~Ldk~ 32 (76)
++.-++|-|+..-+.|||..+-.
T Consensus 15 ~inflil~~lL~~fl~kpi~~~l 37 (164)
T PRK14473 15 LINFLLLIFLLRTFLYRPVLNLL 37 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668889999999999986543
No 39
>COG3771 Predicted membrane protein [Function unknown]
Probab=27.87 E-value=79 Score=21.86 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 034996 7 AIIAIAGVVLGWIAIEMA 24 (76)
Q Consensus 7 avVVvgaLAlGWlaIElA 24 (76)
|++...|+++||+..-+-
T Consensus 46 a~lF~~G~~lgwli~g~f 63 (97)
T COG3771 46 ATLFAAGFALGWLICGLF 63 (97)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456678999999976543
No 40
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=27.69 E-value=1.2e+02 Score=20.67 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=13.9
Q ss_pred HHhHHHhhhcCCCCCCCCC
Q 034996 30 EKGREAIDQSLNPDYDPDG 48 (76)
Q Consensus 30 dk~R~AidrSldP~~DPDd 48 (76)
+++.+.|... +|+|.|==
T Consensus 38 ~~A~~~I~ei-~p~Y~PWf 55 (100)
T PRK02898 38 GQAEEAITEI-APDYEPWF 55 (100)
T ss_pred HHHHHHHHHh-CCCCcccc
Confidence 6788888875 99988854
No 41
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=27.59 E-value=1.3e+02 Score=19.48 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHh
Q 034996 8 IIAIAGVVLGWIAIEMACKPCLEKG 32 (76)
Q Consensus 8 vVVvgaLAlGWlaIElAfKP~Ldk~ 32 (76)
+.++--++|.|+.--+.|||..+-.
T Consensus 10 ~~~i~flil~~ll~~~l~~pi~~~l 34 (140)
T PRK07353 10 LMAVQFVLLTFILNALFYKPVGKVV 34 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677899999999999976533
No 42
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=27.04 E-value=84 Score=19.00 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHH
Q 034996 4 ITVAIIAIAGVVLGWIAIEMACKPCLE 30 (76)
Q Consensus 4 iksavVVvgaLAlGWlaIElAfKP~Ld 30 (76)
++..++++.++..|=-.+-.-|||-|.
T Consensus 11 l~~~~~s~~sM~aGA~vVH~~ykPdlt 37 (47)
T PF14990_consen 11 LKSLVASLLSMLAGASVVHNIYKPDLT 37 (47)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhCccCC
Confidence 467788899999999999999999764
No 43
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.00 E-value=1.9e+02 Score=20.55 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHhHH
Q 034996 5 TVAIIAIAGVVLGWIAIEMACKPCLEKGRE 34 (76)
Q Consensus 5 ksavVVvgaLAlGWlaIElAfKP~Ldk~R~ 34 (76)
-..+.++.|+++||+....-++--+..++.
T Consensus 5 ~~i~~~~vG~~~G~~~~~~~~~~~~~~A~~ 34 (201)
T PF12072_consen 5 IAIVALIVGIGIGYLVRKKINRKKLEQAEK 34 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777766655555555543
No 44
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=26.88 E-value=52 Score=25.10 Aligned_cols=23 Identities=26% Similarity=0.214 Sum_probs=16.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh
Q 034996 2 AAITVAIIAIAGVVLGWIAIEMAC 25 (76)
Q Consensus 2 gAiksavVVvgaLAlGWlaIElAf 25 (76)
||++||+=|+|++.|+= .|+--|
T Consensus 140 ~A~~TAAGVAGG~lL~n-~i~~lF 162 (247)
T PF09849_consen 140 GAAQTAAGVAGGMLLAN-GIESLF 162 (247)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHh
Confidence 68889999998887764 344333
No 45
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=26.75 E-value=1.1e+02 Score=21.28 Aligned_cols=30 Identities=13% Similarity=-0.072 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHh---HHHhhhc
Q 034996 10 AIAGVVLGWIAIEMACKPCLEKG---REAIDQS 39 (76)
Q Consensus 10 VvgaLAlGWlaIElAfKP~Ldk~---R~AidrS 39 (76)
++.-++|-|+..-++|||..+-. ++.|.++
T Consensus 31 ~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~ 63 (184)
T CHL00019 31 LINLSVVLGVLIYFGKGVLSDLLDNRKQTILNT 63 (184)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 66778899999999999976533 3444444
No 46
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=26.01 E-value=1.3e+02 Score=20.72 Aligned_cols=23 Identities=17% Similarity=0.115 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHH
Q 034996 9 IAIAGVVLGWIAIEMACKPCLEK 31 (76)
Q Consensus 9 VVvgaLAlGWlaIElAfKP~Ldk 31 (76)
.++.-++|-|+..-+.|||..+-
T Consensus 24 ~iInFliL~~lL~~~l~~pi~~~ 46 (173)
T PRK13453 24 TVLTFIVLLALLKKFAWGPLKDV 46 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788899999999998653
No 47
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=25.95 E-value=1.2e+02 Score=16.98 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 034996 3 AITVAIIAIAGVVLGWIAIE 22 (76)
Q Consensus 3 AiksavVVvgaLAlGWlaIE 22 (76)
|+..-+.++.+|++|++...
T Consensus 7 a~i~~~lvlvGla~Gf~LLk 26 (31)
T PF08041_consen 7 AVICFGLVLVGLALGFVLLK 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhe
Confidence 44455667788888887654
No 48
>PF10999 DUF2839: Protein of unknown function (DUF2839); InterPro: IPR021262 This bacterial family of unknown function appear to be restricted to Cyanobacteria.
Probab=25.71 E-value=55 Score=20.93 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 034996 5 TVAIIAIAGVVLGWIAIEM 23 (76)
Q Consensus 5 ksavVVvgaLAlGWlaIEl 23 (76)
|.+-+-+|.|++.|++|.+
T Consensus 42 kg~w~gig~l~~~wi~vrf 60 (68)
T PF10999_consen 42 KGPWIGIGILVLIWIIVRF 60 (68)
T ss_pred cccchhHHHHHHHHHHHHh
Confidence 4456778999999999875
No 49
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=25.36 E-value=39 Score=21.61 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=16.4
Q ss_pred HHHHHHHHhhhhhHHHhHHHhhhcCC
Q 034996 16 LGWIAIEMACKPCLEKGREAIDQSLN 41 (76)
Q Consensus 16 lGWlaIElAfKP~Ldk~R~AidrSld 41 (76)
|||| ++||=.+.++.|.+.||
T Consensus 64 Lg~L-----l~~f~~~Ie~~I~~~Ld 84 (87)
T PF09650_consen 64 LGFL-----LSPFKGKIEQEIEKNLD 84 (87)
T ss_pred cHHH-----HHHHHHHHHHHHHHHHH
Confidence 5665 47888889999988776
No 50
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=25.03 E-value=1.9e+02 Score=21.02 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhHHHhhh
Q 034996 8 IIAIAGVVLGWIAIEMACKPCLEKGREAIDQ 38 (76)
Q Consensus 8 vVVvgaLAlGWlaIElAfKP~Ldk~R~Aidr 38 (76)
++++.+++++|+.+....||. .+.++++.+
T Consensus 161 ~~~l~~~~~~~~~~r~~~~pl-~~l~~~~~~ 190 (435)
T PRK09467 161 AIGLLSVAGGWLFIRIQNRPL-VALEHAALQ 190 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhHH-HHHHHHHHH
Confidence 344556677888888889995 445555544
No 51
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=24.93 E-value=76 Score=21.99 Aligned_cols=22 Identities=36% Similarity=0.798 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHH
Q 034996 7 AIIAIAGVVLGWIAIEMACKPCLE 30 (76)
Q Consensus 7 avVVvgaLAlGWlaIElAfKP~Ld 30 (76)
+++++-|+++|| +|..|-||-.
T Consensus 31 SvLA~~Gvv~GL--VEtVCsPFs~ 52 (102)
T PF15103_consen 31 SVLAFFGVVIGL--VETVCSPFSA 52 (102)
T ss_pred hHHHHHHHHHHH--HHHHhCcccc
Confidence 455555666666 6999999954
No 52
>PRK05346 Na(+)-translocating NADH-quinone reductase subunit C; Provisional
Probab=24.82 E-value=78 Score=24.08 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=13.0
Q ss_pred HHHHHHHhhhhhHHHhHH
Q 034996 17 GWIAIEMACKPCLEKGRE 34 (76)
Q Consensus 17 GWlaIElAfKP~Ldk~R~ 34 (76)
-||.-. +|+|||.+.|+
T Consensus 236 ~al~~~-G~~~fL~~~~~ 252 (256)
T PRK05346 236 FWLGEE-GYGPFLKKLRA 252 (256)
T ss_pred HHHHhc-CcHHHHHHHHh
Confidence 365544 89999999875
No 53
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=24.58 E-value=1.5e+02 Score=19.43 Aligned_cols=24 Identities=21% Similarity=0.384 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHh
Q 034996 9 IAIAGVVLGWIAIEMACKPCLEKG 32 (76)
Q Consensus 9 VVvgaLAlGWlaIElAfKP~Ldk~ 32 (76)
.++.-++|-|+.--+.|||..+-.
T Consensus 10 ~~i~Flil~~il~~~~~~pi~~~l 33 (156)
T PRK05759 10 QLIAFLILVWFIMKFVWPPIMKAL 33 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455567888999999999976543
No 54
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=24.46 E-value=54 Score=16.96 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 034996 4 ITVAIIAIAGVVLGWIA 20 (76)
Q Consensus 4 iksavVVvgaLAlGWla 20 (76)
+|.+..+.++.+++|.+
T Consensus 8 Lk~~~a~~a~~~~~~~~ 24 (26)
T PF10518_consen 8 LKGGAAAAAAAALGGCA 24 (26)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 57778888888888753
No 55
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=24.46 E-value=1.1e+02 Score=20.94 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=12.1
Q ss_pred HHHhhhhh---HHHhHHHhhhcC
Q 034996 21 IEMACKPC---LEKGREAIDQSL 40 (76)
Q Consensus 21 IElAfKP~---Ldk~R~AidrSl 40 (76)
.-++|||. |++=++.|.+++
T Consensus 28 ~k~l~~pi~~~le~R~~~I~~~l 50 (167)
T PRK14475 28 LKVLPKALAGALDAYAAKIQAEL 50 (167)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 47788995 444455555543
No 56
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=24.24 E-value=95 Score=21.28 Aligned_cols=31 Identities=23% Similarity=0.022 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHH---HhHHHhhhcC
Q 034996 10 AIAGVVLGWIAIEMACKPCLE---KGREAIDQSL 40 (76)
Q Consensus 10 VvgaLAlGWlaIElAfKP~Ld---k~R~AidrSl 40 (76)
++--++|-|+..-+.|||..+ +=++.|.+++
T Consensus 26 iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l 59 (174)
T PRK07352 26 LINLAIVIGLLYYFGRGFLGKILEERREAILQAL 59 (174)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 466678888999999999643 3334444443
No 57
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=24.24 E-value=64 Score=22.95 Aligned_cols=40 Identities=5% Similarity=0.199 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHhhhcCCCCCC
Q 034996 4 ITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYD 45 (76)
Q Consensus 4 iksavVVvgaLAlGWlaIElAfKP~Ldk~R~AidrSldP~~D 45 (76)
+..++.|+|.++++.+..- |--++.+.|....|.....++
T Consensus 285 v~~~~~~~G~~~~~f~LYK--~g~~~~~~~~r~~~~~~~~~~ 324 (354)
T PF05795_consen 285 VSPVLSVLGIPLIFFLLYK--FGSWFNRRRGRRRRIINNNFN 324 (354)
T ss_pred hhhhhhhHHHHHHHHHHhc--cchhhcccccccccccccccc
Confidence 3445667777777777766 557777777665554333333
No 58
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.02 E-value=1.1e+02 Score=22.58 Aligned_cols=25 Identities=4% Similarity=0.126 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhH
Q 034996 9 IAIAGVVLGWIAIEMACKPCLEKGR 33 (76)
Q Consensus 9 VVvgaLAlGWlaIElAfKP~Ldk~R 33 (76)
|++|+++.+|+...+==||||..+.
T Consensus 56 Vil~~~~~~~~l~~~k~~p~m~Ev~ 80 (165)
T PF11286_consen 56 VILGLLLTSALLRQLKTHPFMTEVY 80 (165)
T ss_pred HHHHHHHHHHHHHHHccChHHHHHH
Confidence 6788888899988888889987653
No 59
>PF12406 DUF3664: Surface protein ; InterPro: IPR022131 This family of proteins is found in eukaryotes. Proteins in this family are typically between 131 and 312 amino acids in length.
Probab=23.94 E-value=52 Score=22.78 Aligned_cols=22 Identities=50% Similarity=1.040 Sum_probs=13.8
Q ss_pred hhcCCC-CCCCCCCcccccccCCCCCCC
Q 034996 37 DQSLNP-DYDPDGDADTNIRAPLYPHHP 63 (76)
Q Consensus 37 drSldP-~~DPDd~~~~~~~~p~~~~~p 63 (76)
||-||| ++||.|+ ..||.||-+
T Consensus 1 DRQLNPIDFDPNdd-----QQPldPnQl 23 (100)
T PF12406_consen 1 DRQLNPIDFDPNDD-----QQPLDPNQL 23 (100)
T ss_pred CCccCccccCcccc-----cCcCCcchh
Confidence 455666 6788775 356666644
No 60
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=23.66 E-value=1.8e+02 Score=20.03 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHh
Q 034996 9 IAIAGVVLGWIAIEMACKPCLEKG 32 (76)
Q Consensus 9 VVvgaLAlGWlaIElAfKP~Ldk~ 32 (76)
..+.-++|-|+..-+.+||+++-.
T Consensus 12 ~~i~F~ill~ll~~~~~~pi~~~l 35 (161)
T COG0711 12 QLIAFVILLWLLKKFVWKPILKAL 35 (161)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345667888999999999987644
No 61
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=23.56 E-value=1.2e+02 Score=20.76 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHH---hHHHhhhc
Q 034996 9 IAIAGVVLGWIAIEMACKPCLEK---GREAIDQS 39 (76)
Q Consensus 9 VVvgaLAlGWlaIElAfKP~Ldk---~R~AidrS 39 (76)
.++.-++|-|+..-++|||..+- =++.|.++
T Consensus 22 ~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~ 55 (173)
T PRK13460 22 TLVTFLVVVLVLKKFAWDVILKALDERASGVQND 55 (173)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35667788899999999997543 33444444
No 62
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.51 E-value=1.6e+02 Score=16.85 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 034996 12 AGVVLGWIAIEMA 24 (76)
Q Consensus 12 gaLAlGWlaIElA 24 (76)
.|+.+||+..-..
T Consensus 30 ~G~llg~l~~~~~ 42 (68)
T PF06305_consen 30 LGALLGWLLSLPS 42 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555544433
No 63
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=23.49 E-value=1.2e+02 Score=19.86 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 034996 4 ITVAIIAIAGVVLGWIAIEMACKPCLEK 31 (76)
Q Consensus 4 iksavVVvgaLAlGWlaIElAfKP~Ldk 31 (76)
+-.++++++..+|.|-++=+..-||+|.
T Consensus 6 vG~~~l~~a~~vF~YYt~WvlllPFvd~ 33 (78)
T PF07297_consen 6 VGLLMLAVALSVFTYYTIWVLLLPFVDE 33 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4567888999999999999999999864
No 64
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.45 E-value=1.6e+02 Score=20.19 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHH
Q 034996 9 IAIAGVVLGWIAIEMACKPCLEK 31 (76)
Q Consensus 9 VVvgaLAlGWlaIElAfKP~Ldk 31 (76)
.++.-++|-|+..-++|||..+-
T Consensus 24 ~~i~Flil~~lL~~~l~kpi~~~ 46 (175)
T PRK14472 24 TAVTFVIVLLILKKIAWGPILSA 46 (175)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34566788899999999997643
No 65
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=23.40 E-value=2.2e+02 Score=19.73 Aligned_cols=30 Identities=40% Similarity=0.567 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhhh-hHHHhHHHhhhcC
Q 034996 11 IAGVVLGWIAIEMACKP-CLEKGREAIDQSL 40 (76)
Q Consensus 11 vgaLAlGWlaIElAfKP-~Ldk~R~AidrSl 40 (76)
..+.++.|+..+++--| +++|.|+.|++..
T Consensus 277 tt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~ 307 (463)
T PF00067_consen 277 TTASTLSWTLYELAKNPEVQEKLREEIDSVL 307 (463)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 34678999999999888 4899999998875
No 66
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=22.92 E-value=60 Score=22.19 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=16.8
Q ss_pred HHhhhhhHHHhHHHhhhcCCCCCCCCCCc
Q 034996 22 EMACKPCLEKGREAIDQSLNPDYDPDGDA 50 (76)
Q Consensus 22 ElAfKP~Ldk~R~AidrSldP~~DPDd~~ 50 (76)
|-.|++++++|++-+ .++||||-+
T Consensus 73 ~~~~~~~~~~A~~~~-----~~~D~~D~p 96 (133)
T PF10130_consen 73 EEIYSENIEEAREII-----RDRDPDDWP 96 (133)
T ss_pred HHHhHHHHHHHHHHh-----cCCCcchHH
Confidence 345678888888844 446899875
No 67
>PF06951 PLA2G12: Group XII secretory phospholipase A2 precursor (PLA2G12); InterPro: IPR010711 This family consists of several group XII secretory phospholipase A2 precursor (PLA2G12) (3.1.1.4 from EC) proteins. Group XII and group V PLA(2)s are thought to participate in helper T cell immune response through release of immediate second signals and generation of downstream eicosanoids [].; GO: 0004623 phospholipase A2 activity, 0005509 calcium ion binding, 0016042 lipid catabolic process, 0005576 extracellular region
Probab=22.43 E-value=73 Score=23.68 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhhHHHhHHHh
Q 034996 13 GVVLGWIAIEMACKPCLEKGREAI 36 (76)
Q Consensus 13 aLAlGWlaIElAfKP~Ldk~R~Ai 36 (76)
|=.+-+-+..++||||++.-|+|=
T Consensus 151 A~~~~~~v~~lGCk~y~~sQr~AC 174 (184)
T PF06951_consen 151 ADLLYNGVWTLGCKPYLNSQRAAC 174 (184)
T ss_pred HHHHHHHHhccCcHHHHHHHHhhc
Confidence 345667778899999999888763
No 68
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=21.80 E-value=81 Score=21.46 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=15.0
Q ss_pred HHHhHHHhhhcCCCCCCCCC
Q 034996 29 LEKGREAIDQSLNPDYDPDG 48 (76)
Q Consensus 29 Ldk~R~AidrSldP~~DPDd 48 (76)
|||.-+++-+||||+.-|-.
T Consensus 42 Le~~addl~nsLdP~~~~l~ 61 (97)
T PF05440_consen 42 LEKAADDLVNSLDPRTPPLN 61 (97)
T ss_pred HHHHHHHHHhccCCCCCccc
Confidence 56666889999999876643
No 69
>COG0772 FtsW Bacterial cell division membrane protein [Cell division and chromosome partitioning]
Probab=21.75 E-value=2.2e+02 Score=22.67 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=19.5
Q ss_pred HHhhhhhHHHhHHHhhhcCCCCCCCCCC
Q 034996 22 EMACKPCLEKGREAIDQSLNPDYDPDGD 49 (76)
Q Consensus 22 ElAfKP~Ldk~R~AidrSldP~~DPDd~ 49 (76)
+.-.||| -++-+..-+||.-||.++
T Consensus 210 ~~~~~~y---~~~Ri~~fl~P~~d~~g~ 234 (381)
T COG0772 210 FIFLKPY---QKKRVTSFLDPEADPLGS 234 (381)
T ss_pred HHHccHH---HHHHHHHhcCcccCCCCC
Confidence 6778888 344588899999999765
No 70
>PRK07234 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=21.53 E-value=83 Score=25.20 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhHHHh
Q 034996 11 IAGVVLGWIAIEMACKPCLEKGREAI 36 (76)
Q Consensus 11 vgaLAlGWlaIElAfKP~Ldk~R~Ai 36 (76)
+..+++||+...+.||+...|.+...
T Consensus 430 ~~~~~~g~~~~~~~~~~~~~~~~~~~ 455 (470)
T PRK07234 430 LLTIGLGWLPYFLVFRRLILKLPRVL 455 (470)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccH
Confidence 34567899999999999876666543
No 71
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=21.33 E-value=1.1e+02 Score=20.51 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 034996 8 IIAIAGVVLGWIAIEMAC 25 (76)
Q Consensus 8 vVVvgaLAlGWlaIElAf 25 (76)
+.|+++.++||...+..|
T Consensus 87 vsv~~~~~~~~~~~~~~~ 104 (142)
T PF11712_consen 87 VSVFAVFFAGWYWAGYSF 104 (142)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 457888899998888776
No 72
>KOG4007 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.12 E-value=1.9e+02 Score=22.65 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhHHHhhhcCC
Q 034996 9 IAIAGVVLGWIAIEMACKPCLEKGREAIDQSLN 41 (76)
Q Consensus 9 VVvgaLAlGWlaIElAfKP~Ldk~R~AidrSld 41 (76)
|-+-|+.++|..+-|-.-|.|.| |-+++.-.+
T Consensus 141 i~ii~iL~lYMvfLmcldPlLrK-r~~~~yq~h 172 (229)
T KOG4007|consen 141 ISIIGILLLYMVFLMCLDPLLRK-RVKANYQEH 172 (229)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhh-hhhhhHHHh
Confidence 33456678888888888999999 876666533
No 73
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=21.04 E-value=1.4e+02 Score=25.21 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHhhhcCCCCCCCCC
Q 034996 3 AITVAIIAIAGVVLGWIAIEMACKPCLEKGREAIDQSLNPDYDPDG 48 (76)
Q Consensus 3 AiksavVVvgaLAlGWlaIElAfKP~Ldk~R~AidrSldP~~DPDd 48 (76)
.+...++++.++++.|+.+....+|+..|+.++...- +..+.+..
T Consensus 444 ~~~~~~~~l~~~lv~~~~~r~~i~~~~~~~~e~~~~~-~~~~~~~~ 488 (545)
T COG1766 444 SLIPVALYLVVFLVLFIIVRPVIRPRRRRGAEALEAA-EEERQGPE 488 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhh-cccccccc
Confidence 4556677777888888888888888888876655443 44444443
No 74
>PRK11677 hypothetical protein; Provisional
Probab=20.98 E-value=1.4e+02 Score=20.96 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 034996 4 ITVAIIAIAGVVLGWIAIEM 23 (76)
Q Consensus 4 iksavVVvgaLAlGWlaIEl 23 (76)
+-..+.++.|+++||+...+
T Consensus 4 ~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33456677888999999886
No 75
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=20.70 E-value=84 Score=21.36 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=14.7
Q ss_pred HHHhHHHhhhcCCCCCCCCC
Q 034996 29 LEKGREAIDQSLNPDYDPDG 48 (76)
Q Consensus 29 Ldk~R~AidrSldP~~DPDd 48 (76)
|||.-+++-+||||..-|-.
T Consensus 43 Le~~addL~nsLdP~~~~l~ 62 (96)
T PRK00965 43 LEALADDLENSLDPRNPPLN 62 (96)
T ss_pred HHHHHHHHHhccCCCCChhh
Confidence 55666888999999866543
No 76
>PF13991 BssS: BssS protein family
Probab=20.28 E-value=55 Score=21.27 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhhhHHHhHHHhhhc
Q 034996 16 LGWIAIEMACKPCLEKGREAIDQS 39 (76)
Q Consensus 16 lGWlaIElAfKP~Ldk~R~AidrS 39 (76)
+-||++|+| |=+++..++.|++-
T Consensus 39 ~~~lT~e~A-r~Li~~L~~~I~ki 61 (73)
T PF13991_consen 39 TYWLTTEMA-RQLISILEAGIDKI 61 (73)
T ss_pred eeEecHHHH-HHHHHHHHHHHHHH
Confidence 348999998 66888888888874
No 77
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=20.24 E-value=1.5e+02 Score=18.41 Aligned_cols=11 Identities=36% Similarity=0.909 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 034996 13 GVVLGWIAIEM 23 (76)
Q Consensus 13 aLAlGWlaIEl 23 (76)
.++-||++.+.
T Consensus 20 ~m~~g~~~~~~ 30 (65)
T PF11189_consen 20 NMIRGWIANSI 30 (65)
T ss_pred HHHhhhhhccc
Confidence 45555555444
No 78
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=20.17 E-value=3.5e+02 Score=19.71 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHh
Q 034996 8 IIAIAGVVLGWIAIEMACKPCLEKG 32 (76)
Q Consensus 8 vVVvgaLAlGWlaIElAfKP~Ldk~ 32 (76)
++++-+|.++|..+-+-.-|+|.|-
T Consensus 61 vl~Vi~lLvlYM~fL~~ldPllrk~ 85 (149)
T PF05434_consen 61 VLWVIGLLVLYMLFLMCLDPLLRKR 85 (149)
T ss_pred eHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 3567778889999999999999443
Done!