Query 034996
Match_columns 76
No_of_seqs 35 out of 37
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 13:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034996.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034996hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3czha1 a.104.1.1 (A:40-502) V 60.3 9.3 0.00068 23.8 5.0 39 12-50 276-315 (463)
2 d1po5a_ a.104.1.1 (A:) Mammali 46.0 21 0.0015 22.4 5.1 35 13-47 277-312 (465)
3 d1r9oa_ a.104.1.1 (A:) Mammali 43.7 25 0.0018 22.0 5.1 38 12-49 277-315 (467)
4 d1tqna_ a.104.1.1 (A:) Mammali 43.6 26 0.0019 22.0 5.3 39 10-48 281-320 (472)
5 d1q90d_ f.32.1.1 (D:) Subunit 25.7 26 0.0019 22.3 2.9 23 4-27 125-147 (156)
6 d2e74h1 f.23.27.1 (H:3-29) Pet 20.2 31 0.0022 16.9 1.9 13 14-26 2-14 (27)
7 d1xmeb2 f.17.2.1 (B:3-36) Bact 17.3 27 0.0019 17.9 1.3 13 13-25 11-23 (34)
8 d2in1a1 d.20.1.4 (A:3-164) Ufm 17.2 24 0.0017 23.5 1.3 11 13-23 135-148 (162)
9 d2hz5a1 d.110.7.1 (A:5-94) Dyn 15.8 39 0.0028 19.5 1.9 15 25-39 42-56 (90)
10 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 13.8 26 0.0019 19.7 0.7 22 24-47 54-75 (76)
No 1
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.28 E-value=9.3 Score=23.76 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhh-hHHHhHHHhhhcCCCCCCCCCCc
Q 034996 12 AGVVLGWIAIEMACKP-CLEKGREAIDQSLNPDYDPDGDA 50 (76)
Q Consensus 12 gaLAlGWlaIElAfKP-~Ldk~R~AidrSldP~~DPDd~~ 50 (76)
.+-++.|...+++=.| +++|.|+.|+....+..+|+.++
T Consensus 276 t~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~ 315 (463)
T d3czha1 276 TTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKPSWDD 315 (463)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCSSSCCCGGG
T ss_pred chhhhhhHHHhhccCcHHHHHHHHHHHhhcCCCCCCCHHH
Confidence 4567889999999988 88999999999888887777553
No 2
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=45.97 E-value=21 Score=22.45 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhhh-hHHHhHHHhhhcCCCCCCCC
Q 034996 13 GVVLGWIAIEMACKP-CLEKGREAIDQSLNPDYDPD 47 (76)
Q Consensus 13 aLAlGWlaIElAfKP-~Ldk~R~AidrSldP~~DPD 47 (76)
+.++.|+..+++--| ..+|.|+.|+........+.
T Consensus 277 a~~l~~~l~~l~~~p~~~~kl~~ei~~~~~~~~~~~ 312 (465)
T d1po5a_ 277 STTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPA 312 (465)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHTCSSSCCC
T ss_pred hhhhHHHHHHHhhhhhHHHHHHHHHHHHcCcccCcc
Confidence 668889999999998 77889999998866554443
No 3
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.66 E-value=25 Score=21.98 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhhh-hHHHhHHHhhhcCCCCCCCCCC
Q 034996 12 AGVVLGWIAIEMACKP-CLEKGREAIDQSLNPDYDPDGD 49 (76)
Q Consensus 12 gaLAlGWlaIElAfKP-~Ldk~R~AidrSldP~~DPDd~ 49 (76)
-+.++.|...+++-.| .++|.|+.++.....+.++..+
T Consensus 277 Ta~~l~~~l~~L~~~p~~~~~l~~Ei~~~~~~~~~~~~~ 315 (467)
T d1r9oa_ 277 TSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQ 315 (467)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCSSSCCCGG
T ss_pred chhHHHHHHHHhhcCchHHHHHHhhhhhhcCCCCCCcHH
Confidence 3677899999999988 6899999999876655555543
No 4
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.57 E-value=26 Score=22.04 Aligned_cols=39 Identities=31% Similarity=0.384 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhhh-hHHHhHHHhhhcCCCCCCCCC
Q 034996 10 AIAGVVLGWIAIEMACKP-CLEKGREAIDQSLNPDYDPDG 48 (76)
Q Consensus 10 VvgaLAlGWlaIElAfKP-~Ldk~R~AidrSldP~~DPDd 48 (76)
-..+.++.|+..+++-.| .++|.|+.|++.+.+...+..
T Consensus 281 ~tta~~l~~~l~~L~~~Pe~~~klr~Ei~~~~~~~~~~~~ 320 (472)
T d1tqna_ 281 ETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTY 320 (472)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTCCCCH
T ss_pred ccccccceeeccccccCccccccccceeheeccccccchH
Confidence 345678899999999999 569999999998765555543
No 5
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=25.67 E-value=26 Score=22.30 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q 034996 4 ITVAIIAIAGVVLGWIAIEMACKP 27 (76)
Q Consensus 4 iksavVVvgaLAlGWlaIElAfKP 27 (76)
+.+.+.+++.+.+.||.| .+.+|
T Consensus 125 ~~~~~f~~~~~~l~~Lgi-~~~~P 147 (156)
T d1q90d_ 125 IATILFLLGTLVAVWLGI-GSTFP 147 (156)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTSC
T ss_pred HHHHHHHHHHHHHHHHHh-ccCcC
Confidence 345667888899999998 67777
No 6
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.16 E-value=31 Score=16.92 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhh
Q 034996 14 VVLGWIAIEMACK 26 (76)
Q Consensus 14 LAlGWlaIElAfK 26 (76)
+.+||.+.-+.|.
T Consensus 2 ~~lgwv~llvvft 14 (27)
T d2e74h1 2 DVLGWVALLVVFT 14 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchhHhHHHHHhh
Confidence 4678887776664
No 7
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=17.28 E-value=27 Score=17.91 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhh
Q 034996 13 GVVLGWIAIEMAC 25 (76)
Q Consensus 13 aLAlGWlaIElAf 25 (76)
+---|||++.+|.
T Consensus 11 ayekgwlafslam 23 (34)
T d1xmeb2 11 AYEKGWLAFSLAM 23 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHH
Confidence 4446999988764
No 8
>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.23 E-value=24 Score=23.54 Aligned_cols=11 Identities=45% Similarity=1.105 Sum_probs=8.1
Q ss_pred HHHHH---HHHHHH
Q 034996 13 GVVLG---WIAIEM 23 (76)
Q Consensus 13 aLAlG---WlaIEl 23 (76)
+|||| ||++|+
T Consensus 135 alaLGL~PWLA~Ei 148 (162)
T d2in1a1 135 LMALGLGPWLAVEI 148 (162)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred HHHhccchhhhhhh
Confidence 45554 999998
No 9
>d2hz5a1 d.110.7.1 (A:5-94) Dynein light chain 2A, cytoplasmic {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.81 E-value=39 Score=19.48 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=11.9
Q ss_pred hhhhHHHhHHHhhhc
Q 034996 25 CKPCLEKGREAIDQS 39 (76)
Q Consensus 25 fKP~Ldk~R~AidrS 39 (76)
+.++.+++|..+..-
T Consensus 42 ~~~l~~~A~~~vrdl 56 (90)
T d2hz5a1 42 MHSFILKARSTVRDI 56 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 568999999988654
No 10
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=13.80 E-value=26 Score=19.73 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=12.9
Q ss_pred hhhhhHHHhHHHhhhcCCCCCCCC
Q 034996 24 ACKPCLEKGREAIDQSLNPDYDPD 47 (76)
Q Consensus 24 AfKP~Ldk~R~AidrSldP~~DPD 47 (76)
+|.|=...-.+.+-|+ |+|||+
T Consensus 54 v~~~~I~~~~~~L~k~--p~y~~~ 75 (76)
T d1gyxa_ 54 IWDAEIAPQMEALIKK--PGYSMN 75 (76)
T ss_dssp HHHHTTTTTTTTCSBC--CSSCCC
T ss_pred hcCcccccChhhhccC--CCCCCC
Confidence 4444444444555565 888876
Done!