BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034998
(76 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJF3|DCP1_ARATH mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana
GN=At1g08370 PE=1 SV=2
Length = 367
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/76 (88%), Positives = 75/76 (98%)
Query: 1 MSQNGKLMPNLDQQSTKLLNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG 60
MSQNGK++PNLDQ ST+LLNLTVLQRI+P+IEEILITAAHVTFYEFNI+LSQWSRKDVEG
Sbjct: 1 MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEG 60
Query: 61 SLFVVKRNTQPRFQFV 76
SLFVVKR+TQPRFQF+
Sbjct: 61 SLFVVKRSTQPRFQFI 76
>sp|Q5R413|DCP1B_PONAB mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1
Length = 609
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 19 LNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFV 76
++L LQR +P+I I+ A+ V Y F ++W + DVEG+LFV R+ P+ F
Sbjct: 16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFT 73
>sp|Q8IZD4|DCP1B_HUMAN mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=2
Length = 617
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 19 LNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFV 76
++L LQR +P+I I+ A+ V Y F ++W + DVEG+LFV R+ P+ F
Sbjct: 16 ISLAALQRHDPYINRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYTRSASPKHGFT 73
>sp|Q3SZL6|DCP1B_BOVIN mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE=2 SV=1
Length = 581
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 19 LNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQF 75
++L L+R +P+I I+ A+ V Y F ++W + DVEG+LFV R+ P+ F
Sbjct: 14 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTDVEGTLFVYSRSASPKHGF 70
>sp|Q91YD3|DCP1A_MOUSE mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a PE=1 SV=1
Length = 602
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 19 LNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFV 76
++L L++ +P+I I V Y F +QW + D+EG+LFV +R+ P F
Sbjct: 31 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGFT 88
>sp|Q9NPI6|DCP1A_HUMAN mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A PE=1 SV=2
Length = 582
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 19 LNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFV 76
++L L++ +P+I I V Y F +QW + D+EG+LFV +R+ P F
Sbjct: 11 MSLAALKQHDPYITSIADLTGQVALYTFCPKANQWEKTDIEGTLFVYRRSASPYHGFT 68
>sp|Q3U564|DCP1B_MOUSE mRNA-decapping enzyme 1B OS=Mus musculus GN=Dcp1b PE=2 SV=1
Length = 578
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 19 LNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQF 75
++L L+R +P+I I+ A+ V Y F ++W + VEG+LFV R+ P+ F
Sbjct: 16 ISLAALRRHDPYISRIVDVASQVALYTFGHRANEWEKTGVEGTLFVYTRSASPKHGF 72
>sp|Q9P805|DCP1_SCHPO mRNA-decapping enzyme subunit 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dcp1 PE=1 SV=1
Length = 127
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 19 LNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVK 66
+NL VL+ P IE I+ A+HV Y+F++ +W + +EG+ F+VK
Sbjct: 11 VNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVK 58
>sp|Q74Z05|DCP1_ASHGO mRNA-decapping enzyme subunit 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DCP1
PE=3 SV=1
Length = 193
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 17 KLLNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQ 70
K LN V+ R +P I+++L H T Y++ ++W++ + +G L + R+ +
Sbjct: 17 KTLNFNVIGRYDPKIKQLLFHTPHATVYKWEAGENKWNKLEYQGVLAIYLRDVR 70
>sp|A8AY51|EZRA_STRGC Septation ring formation regulator EzrA OS=Streptococcus gordonii
(strain Challis / ATCC 35105 / CH1 / DL1 / V288)
GN=ezrA PE=3 SV=1
Length = 574
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 3 QNGKLMPNLDQQSTKLLNLTVLQRINPFIEEILITAAHVTFYEFN---IDLSQWSRKDVE 59
+N L+ +L+++ KL NL V + LI + VTF E+N +DLS S D+E
Sbjct: 29 RNETLLDSLEERKEKLYNLPVNDEVEAIKNMHLIGQSQVTFREWNQKWVDLSLNSFADIE 88
Query: 60 GSLF 63
++F
Sbjct: 89 NNIF 92
>sp|A3CMA0|EZRA_STRSV Septation ring formation regulator EzrA OS=Streptococcus
sanguinis (strain SK36) GN=ezrA PE=3 SV=1
Length = 574
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 3 QNGKLMPNLDQQSTKLLNLTVLQRINPFIEEI----LITAAHVTFYEFN---IDLSQWSR 55
+N L+ NL+++ L NL V N +EE+ LI + V F E+N +DLS S
Sbjct: 29 RNEALLQNLEERKEALYNLPV----NDEVEEVKNMHLIGQSQVAFREWNQKWVDLSLNSF 84
Query: 56 KDVEGSLF 63
D+E +LF
Sbjct: 85 ADIENNLF 92
>sp|A4W2T8|EZRA_STRS2 Septation ring formation regulator EzrA OS=Streptococcus suis
(strain 98HAH33) GN=ezrA PE=3 SV=1
Length = 574
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 3 QNGKLMPNLDQQSTKLLNLTVLQRINPFIEEILITAAHVTFYEFN---IDLSQWSRKDVE 59
+N L+ L+++ +L NL V + + LI + V+F E+N +DLS S D+E
Sbjct: 29 RNDNLLVALEERKEELFNLPVNEEVETVKALHLIGQSQVSFREWNQKWVDLSLNSFADIE 88
Query: 60 GSLF 63
+F
Sbjct: 89 NHIF 92
>sp|A4VWI6|EZRA_STRSY Septation ring formation regulator EzrA OS=Streptococcus suis
(strain 05ZYH33) GN=ezrA PE=3 SV=1
Length = 574
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 3 QNGKLMPNLDQQSTKLLNLTVLQRINPFIEEILITAAHVTFYEFN---IDLSQWSRKDVE 59
+N L+ L+++ +L NL V + + LI + V+F E+N +DLS S D+E
Sbjct: 29 RNDNLLVALEERKEELFNLPVNEEVETVKALHLIGQSQVSFREWNQKWVDLSLNSFADIE 88
Query: 60 GSLF 63
+F
Sbjct: 89 NHIF 92
>sp|Q8DTQ3|EZRA_STRMU Septation ring formation regulator EzrA OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ezrA PE=3
SV=1
Length = 574
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 3 QNGKLMPNLDQQSTKLLNLTVLQRINPFIEEI----LITAAHVTFYEFN---IDLSQWSR 55
+N L+ L+++ L +L V N IEE+ LI + TF E+N +DLS S
Sbjct: 29 RNDSLITKLEERKQNLFDLPV----NDEIEEVKKLHLIGQSQTTFREWNQKWVDLSLNSF 84
Query: 56 KDVEGSLFVVKRNTQPRFQFV 76
D+E +F + N F F+
Sbjct: 85 SDIENHIFEAE-NLNDTFNFI 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,320,480
Number of Sequences: 539616
Number of extensions: 804105
Number of successful extensions: 1551
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1541
Number of HSP's gapped (non-prelim): 18
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)