Query 034998
Match_columns 76
No_of_seqs 100 out of 176
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:21:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06058 DCP1: Dcp1-like decap 100.0 7.5E-31 1.6E-35 175.5 0.9 63 14-76 2-64 (122)
2 KOG2868 Decapping enzyme compl 99.9 1.7E-26 3.7E-31 175.8 4.9 71 6-76 2-72 (335)
3 cd00837 EVH1 EVH1 (Enabled, Va 93.0 0.19 4.1E-06 32.2 3.9 36 38-73 6-42 (104)
4 KOG4693 Uncharacterized conser 93.0 0.058 1.3E-06 42.2 1.7 22 41-62 105-126 (392)
5 smart00160 RanBD Ran-binding d 91.1 0.31 6.8E-06 32.5 3.4 32 38-70 24-55 (130)
6 PF00568 WH1: WH1 domain; Int 90.2 0.51 1.1E-05 30.4 3.6 36 38-73 13-49 (111)
7 cd00835 RanBD Ran-binding doma 89.7 0.51 1.1E-05 30.7 3.4 31 38-69 15-45 (122)
8 PF09951 DUF2185: Protein of u 83.9 1.7 3.7E-05 27.8 3.3 37 18-56 50-86 (89)
9 PF13415 Kelch_3: Galactose ox 83.4 1.5 3.3E-05 23.8 2.6 17 40-56 18-34 (49)
10 PF00638 Ran_BP1: RanBP1 domai 83.0 1.7 3.8E-05 27.8 3.2 29 39-68 15-43 (122)
11 PF13964 Kelch_6: Kelch motif 82.4 1.3 2.9E-05 24.0 2.1 19 38-56 25-43 (50)
12 PF01344 Kelch_1: Kelch motif; 81.4 1.9 4.1E-05 22.7 2.5 20 37-56 24-43 (47)
13 PF13418 Kelch_4: Galactose ox 79.2 1.7 3.7E-05 23.3 1.8 18 39-56 27-44 (49)
14 smart00612 Kelch Kelch domain. 77.7 2.4 5.2E-05 21.5 2.1 19 39-57 13-31 (47)
15 PF07646 Kelch_2: Kelch motif; 74.1 2.9 6.2E-05 22.7 1.8 22 38-59 27-48 (49)
16 cd01205 WASP WASP-type EVH1 do 67.2 9.8 0.00021 25.1 3.5 31 37-68 8-38 (105)
17 KOG3671 Actin regulatory prote 62.4 3 6.5E-05 34.6 0.4 64 5-69 10-73 (569)
18 smart00461 WH1 WASP homology r 60.7 21 0.00046 22.8 4.1 26 41-66 11-36 (106)
19 PF14598 PAS_11: PAS domain; P 60.5 21 0.00044 22.7 4.0 44 30-73 54-98 (111)
20 COG3055 Uncharacterized protei 59.0 5.5 0.00012 31.8 1.4 20 41-60 113-132 (381)
21 KOG2715 Uncharacterized conser 51.3 11 0.00023 27.8 1.7 23 51-73 20-42 (210)
22 KOG1747 Protein tyrosine kinas 49.2 21 0.00045 28.2 3.1 27 38-67 231-257 (342)
23 PRK13511 6-phospho-beta-galact 43.5 12 0.00027 29.6 1.1 39 6-48 79-119 (469)
24 PHA03092 semaphorin-like prote 42.6 24 0.00052 24.3 2.3 32 31-64 32-63 (134)
25 PLN02814 beta-glucosidase 41.8 17 0.00036 29.4 1.6 39 6-48 102-142 (504)
26 COG2723 BglB Beta-glucosidase/ 40.5 14 0.00031 30.0 1.1 40 6-48 84-125 (460)
27 PRK10708 hypothetical protein; 40.5 23 0.00049 21.6 1.7 14 59-72 29-42 (62)
28 PRK09593 arb 6-phospho-beta-gl 40.4 13 0.00028 29.8 0.8 40 6-48 98-139 (478)
29 PLN02772 guanylate kinase 40.3 23 0.00049 28.3 2.1 21 41-61 51-71 (398)
30 cd02989 Phd_like_TxnDC9 Phosdu 38.7 43 0.00093 21.1 2.9 42 25-66 38-83 (113)
31 TIGR01233 lacG 6-phospho-beta- 38.2 15 0.00032 29.3 0.8 40 5-48 77-118 (467)
32 PF10781 DSRB: Dextransucrase 38.1 26 0.00057 21.3 1.7 14 59-72 29-42 (62)
33 PLN02998 beta-glucosidase 37.3 21 0.00045 28.9 1.5 39 6-48 107-147 (497)
34 PLN02849 beta-glucosidase 37.2 18 0.00039 29.2 1.2 39 6-48 104-144 (503)
35 PF07193 DUF1408: Protein of u 36.9 28 0.00061 21.7 1.8 16 52-69 38-53 (75)
36 PF07669 Eco57I: Eco57I restri 35.0 95 0.002 19.5 4.1 37 33-69 68-104 (106)
37 PF08077 Cm_res_leader: Chlora 34.0 35 0.00075 15.8 1.4 14 56-69 2-15 (17)
38 PLN02153 epithiospecifier prot 33.5 31 0.00067 25.3 1.8 17 42-58 218-234 (341)
39 cd02984 TRX_PICOT TRX domain, 32.6 85 0.0018 18.1 3.4 43 25-67 30-77 (97)
40 PF10813 DUF2733: Protein of u 32.2 32 0.00069 18.4 1.3 13 60-72 2-15 (32)
41 PLN02153 epithiospecifier prot 31.7 34 0.00073 25.1 1.8 17 42-58 277-293 (341)
42 KOG4693 Uncharacterized conser 31.4 22 0.00047 28.2 0.7 22 40-61 267-288 (392)
43 PRK09589 celA 6-phospho-beta-g 31.4 25 0.00054 28.1 1.1 40 6-48 92-133 (476)
44 PF12673 DUF3794: Domain of un 31.0 33 0.00071 20.0 1.4 32 29-63 1-32 (87)
45 PRK10557 hypothetical protein; 30.3 81 0.0017 22.3 3.4 31 38-68 87-119 (192)
46 PHA03098 kelch-like protein; P 29.8 61 0.0013 25.2 3.0 17 41-57 406-422 (534)
47 PRK15014 6-phospho-beta-glucos 29.6 35 0.00076 27.3 1.7 40 6-48 94-135 (477)
48 TIGR03548 mutarot_permut cycli 25.8 60 0.0013 23.5 2.2 16 42-57 272-287 (323)
49 cd01207 Ena-Vasp Enabled-VASP- 25.6 1.3E+02 0.0027 20.0 3.5 31 39-69 7-41 (111)
50 cd02957 Phd_like Phosducin (Ph 25.2 83 0.0018 19.4 2.5 42 25-66 40-84 (113)
51 PF07893 DUF1668: Protein of u 25.1 50 0.0011 25.0 1.7 16 42-57 200-215 (342)
52 PF14157 YmzC: YmzC-like prote 23.9 67 0.0014 19.6 1.8 18 36-53 36-53 (63)
53 PF06355 Aegerolysin: Aegeroly 23.9 81 0.0018 21.2 2.4 26 41-66 52-77 (131)
54 PF00085 Thioredoxin: Thioredo 23.8 86 0.0019 18.0 2.3 43 25-67 33-80 (103)
55 KOG0379 Kelch repeat-containin 23.5 48 0.001 26.3 1.4 22 40-61 189-210 (482)
56 PRK09852 cryptic 6-phospho-bet 23.1 44 0.00096 26.8 1.2 31 18-48 105-137 (474)
57 cd03600 CLECT_thrombomodulin_l 22.7 87 0.0019 20.0 2.3 30 38-67 105-139 (141)
58 PRK11408 hypothetical protein; 22.6 62 0.0013 22.7 1.7 18 42-59 48-65 (145)
59 TIGR01068 thioredoxin thioredo 21.3 1.7E+02 0.0037 16.5 3.5 40 27-66 32-76 (101)
60 PF14066 DUF4256: Protein of u 20.8 37 0.0008 24.5 0.3 16 43-58 118-133 (173)
61 KOG4441 Proteins containing BT 20.6 84 0.0018 25.7 2.3 18 38-55 346-363 (571)
62 cd01206 Homer Homer type EVH1 20.6 1.7E+02 0.0037 19.7 3.4 37 38-74 8-46 (111)
63 PF11679 DUF3275: Protein of u 20.0 51 0.0011 24.5 0.9 13 44-56 202-214 (214)
No 1
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=99.96 E-value=7.5e-31 Score=175.55 Aligned_cols=63 Identities=46% Similarity=0.862 Sum_probs=59.2
Q ss_pred HhhhhhcHHHHHhhCcchHHHhhhCCcEEEEEeeCCCCCeeeCCceeeEEEEecCCCCCcccC
Q 034998 14 QSTKLLNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFV 76 (76)
Q Consensus 14 ~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~~P~~~fi 76 (76)
+++++|||+||||+||+|++||++|+||+||+||+++++|+|+||||+||||+|+.+|+|+|+
T Consensus 2 ~~~~~lnl~vL~r~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~ 64 (122)
T PF06058_consen 2 RTRNELNLRVLQRYDPSIESILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLI 64 (122)
T ss_dssp HHHHHHHHHHHHHC-TTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEE
T ss_pred chHHHHhHHHHhhhCchHHHHHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEE
Confidence 678999999999999999999999999999999999999999999999999999999999985
No 2
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=99.93 E-value=1.7e-26 Score=175.75 Aligned_cols=71 Identities=41% Similarity=0.770 Sum_probs=65.4
Q ss_pred CCCCCCchHhhhhhcHHHHHhhCcchHHHhhhCCcEEEEEeeCCCCCeeeCCceeeEEEEecCCCCCcccC
Q 034998 6 KLMPNLDQQSTKLLNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFV 76 (76)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~~P~~~fi 76 (76)
..+++.....++++||+||+|+||+|++||++++||+||+||...++|+|+|||||||||+|+.+|+|||+
T Consensus 2 ~~~~~~~~~~~~a~nla~l~r~DP~ik~Ild~ashva~Y~fd~~~~eWnKtdiEGtffvY~R~~~p~~gf~ 72 (335)
T KOG2868|consen 2 ENMADELIFRGRALNLAVLQRIDPYIKSILDVASHVALYTFDFGANEWNKTDIEGTFFVYKRDASPRHGFL 72 (335)
T ss_pred cchhHHHHHhhhhhhHHHHhhhCHHHHHHHhhccceeEEEeccccchhhhccceeEEEEEEccCCCccceE
Confidence 34555566667899999999999999999999999999999999999999999999999999999999985
No 3
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=92.98 E-value=0.19 Score=32.23 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=28.8
Q ss_pred CCcEEEEEeeCCCCCeeeC-CceeeEEEEecCCCCCc
Q 034998 38 AAHVTFYEFNIDLSQWSRK-DVEGSLFVVKRNTQPRF 73 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~-~vEGtLFv~~R~~~P~~ 73 (76)
++-|.||.+|+++++|.+. +..|.+-+++-...-.|
T Consensus 6 ~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y 42 (104)
T cd00837 6 TAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTY 42 (104)
T ss_pred EEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEE
Confidence 4678999999999999998 78888888876544333
No 4
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=92.97 E-value=0.058 Score=42.20 Aligned_cols=22 Identities=32% Similarity=0.742 Sum_probs=20.1
Q ss_pred EEEEEeeCCCCCeeeCCceeeE
Q 034998 41 VTFYEFNIDLSQWSRKDVEGSL 62 (76)
Q Consensus 41 v~lY~f~~~~~~W~K~~vEGtL 62 (76)
-+||.||+++++|.|..|||++
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~v 126 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFV 126 (392)
T ss_pred ceeeeeccccccccccceeeec
Confidence 4799999999999999999973
No 5
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=91.14 E-value=0.31 Score=32.47 Aligned_cols=32 Identities=28% Similarity=0.635 Sum_probs=27.3
Q ss_pred CCcEEEEEeeCCCCCeeeCCceeeEEEEecCCC
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQ 70 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~~ 70 (76)
...|-||.|+..+++|.-.|+ |.|.|......
T Consensus 24 ~~r~KL~~~~~~~~~WkerG~-G~lki~~~~~~ 55 (130)
T smart00160 24 SARAKLYRFANDKKEWKERGV-GDLKILKSKDN 55 (130)
T ss_pred EEEeEEEEEcCCCCCCeeccE-EEEEEEEcCCC
Confidence 357899999998999999998 99999886654
No 6
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=90.15 E-value=0.51 Score=30.36 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=28.8
Q ss_pred CCcEEEEEeeCCCCC-eeeCCceeeEEEEecCCCCCc
Q 034998 38 AAHVTFYEFNIDLSQ-WSRKDVEGSLFVVKRNTQPRF 73 (76)
Q Consensus 38 as~v~lY~f~~~~~~-W~K~~vEGtLFv~~R~~~P~~ 73 (76)
++-|-||..|+.+++ |.+....|.+-+++....-.|
T Consensus 13 ~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y 49 (111)
T PF00568_consen 13 TAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSY 49 (111)
T ss_dssp EEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEE
T ss_pred EEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEE
Confidence 467889999998888 999999999988876554333
No 7
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=89.68 E-value=0.51 Score=30.72 Aligned_cols=31 Identities=23% Similarity=0.632 Sum_probs=25.7
Q ss_pred CCcEEEEEeeCCCCCeeeCCceeeEEEEecCC
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT 69 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~ 69 (76)
...|-||.|+.++++|...|+ |+|-|.....
T Consensus 15 ~~r~KLy~~~~~~~~WkerG~-G~lki~~~k~ 45 (122)
T cd00835 15 SVRAKLYRFDDETKEWKERGV-GELKILKHKD 45 (122)
T ss_pred EEEeEEEEEcCCCCCCeeceE-EEEEEEEcCC
Confidence 456899999999999999886 8888877654
No 8
>PF09951 DUF2185: Protein of unknown function (DUF2185); InterPro: IPR018689 This domain has no known function.
Probab=83.87 E-value=1.7 Score=27.77 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=30.4
Q ss_pred hhcHHHHHhhCcchHHHhhhCCcEEEEEeeCCCCCeeeC
Q 034998 18 LLNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRK 56 (76)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~W~K~ 56 (76)
-..|+.+-++||.|..|++. +.-+.|..+.+.+ |.+-
T Consensus 50 i~~ln~i~~idp~i~~ll~~-p~Gt~~er~e~g~-~~~v 86 (89)
T PF09951_consen 50 IVDLNTILNIDPSIIPLLDA-PYGTAFERDEDGE-FYEV 86 (89)
T ss_pred EEeHHHHHhhChHHHHHhcC-CCCceEEECCCCC-EEEe
Confidence 35789999999999999985 6777888888655 9874
No 9
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=83.41 E-value=1.5 Score=23.78 Aligned_cols=17 Identities=24% Similarity=0.643 Sum_probs=14.7
Q ss_pred cEEEEEeeCCCCCeeeC
Q 034998 40 HVTFYEFNIDLSQWSRK 56 (76)
Q Consensus 40 ~v~lY~f~~~~~~W~K~ 56 (76)
.--+|.||.++++|++.
T Consensus 18 ~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRI 34 (49)
T ss_pred ecCEEEEECCCCEEEEC
Confidence 35689999999999987
No 10
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=82.99 E-value=1.7 Score=27.78 Aligned_cols=29 Identities=24% Similarity=0.666 Sum_probs=22.7
Q ss_pred CcEEEEEeeCCCCCeeeCCceeeEEEEecC
Q 034998 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRN 68 (76)
Q Consensus 39 s~v~lY~f~~~~~~W~K~~vEGtLFv~~R~ 68 (76)
..|-||.|+..+++|...|+ |.|-|.+..
T Consensus 15 ~r~Kl~~~~~~~~~W~erG~-G~l~i~~~k 43 (122)
T PF00638_consen 15 VRAKLYRFDKEDKEWKERGV-GTLKILKHK 43 (122)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEET
T ss_pred EEEEEEEEeCCCCCccccce-eEEEEEEcc
Confidence 45899999998899987775 777766543
No 11
>PF13964 Kelch_6: Kelch motif
Probab=82.44 E-value=1.3 Score=23.97 Aligned_cols=19 Identities=5% Similarity=0.240 Sum_probs=15.9
Q ss_pred CCcEEEEEeeCCCCCeeeC
Q 034998 38 AAHVTFYEFNIDLSQWSRK 56 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~ 56 (76)
...-.++.||.++++|++.
T Consensus 25 ~~~~~v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 25 KYSNDVERYDPETNTWEQL 43 (50)
T ss_pred CccccEEEEcCCCCcEEEC
Confidence 3456789999999999986
No 12
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=81.42 E-value=1.9 Score=22.67 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=16.8
Q ss_pred hCCcEEEEEeeCCCCCeeeC
Q 034998 37 TAAHVTFYEFNIDLSQWSRK 56 (76)
Q Consensus 37 ~as~v~lY~f~~~~~~W~K~ 56 (76)
......++.||..+++|++.
T Consensus 24 ~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 24 NQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp SSBEEEEEEEETTTTEEEEE
T ss_pred CceeeeEEEEeCCCCEEEEc
Confidence 45677899999999999974
No 13
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=79.18 E-value=1.7 Score=23.25 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=12.6
Q ss_pred CcEEEEEeeCCCCCeeeC
Q 034998 39 AHVTFYEFNIDLSQWSRK 56 (76)
Q Consensus 39 s~v~lY~f~~~~~~W~K~ 56 (76)
.+--+|.||.++++|++.
T Consensus 27 ~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 27 PLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E---EEEEETTTTEEEE-
T ss_pred ccCCEEEEECCCCEEEEC
Confidence 445689999999999986
No 14
>smart00612 Kelch Kelch domain.
Probab=77.72 E-value=2.4 Score=21.54 Aligned_cols=19 Identities=5% Similarity=0.235 Sum_probs=15.6
Q ss_pred CcEEEEEeeCCCCCeeeCC
Q 034998 39 AHVTFYEFNIDLSQWSRKD 57 (76)
Q Consensus 39 s~v~lY~f~~~~~~W~K~~ 57 (76)
....++.||+.+++|++..
T Consensus 13 ~~~~v~~yd~~~~~W~~~~ 31 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLP 31 (47)
T ss_pred eeeeEEEECCCCCeEccCC
Confidence 4567899999999998754
No 15
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=74.13 E-value=2.9 Score=22.67 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=17.2
Q ss_pred CCcEEEEEeeCCCCCeeeCCce
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVE 59 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vE 59 (76)
...-.++.||.++++|++...-
T Consensus 27 ~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 27 SSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred cccceeEEEECCCCEEeecCCC
Confidence 4456789999999999987643
No 16
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=67.22 E-value=9.8 Score=25.06 Aligned_cols=31 Identities=29% Similarity=0.590 Sum_probs=25.5
Q ss_pred hCCcEEEEEeeCCCCCeeeCCceeeEEEEecC
Q 034998 37 TAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRN 68 (76)
Q Consensus 37 ~as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~ 68 (76)
.++-|-||.=.++.++|.++ .+|.+-+++-.
T Consensus 8 ~~aVvqlY~a~p~~~~W~~~-~~Gvl~~vkD~ 38 (105)
T cd01205 8 ATAVVQLYKAYPDPGRWTKT-LTGAVCLVKDN 38 (105)
T ss_pred EEEEEEEEEecCCCCeeEEE-eEEEEEEEEEC
Confidence 35567899998778999999 99999888754
No 17
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=62.38 E-value=3 Score=34.64 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=41.2
Q ss_pred CCCCCCCchHhhhhhcHHHHHhhCcchHHHhhhCCcEEEEEeeCCCCCeeeCCceeeEEEEecCC
Q 034998 5 GKLMPNLDQQSTKLLNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT 69 (76)
Q Consensus 5 ~~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~ 69 (76)
.+..||+.....+.-.=..|+++-+. +...-.++-|-||.=+.+.+.|.|++.-|.|.+++-..
T Consensus 10 ~~~~~n~~S~lLt~~ene~lf~~lgk-~~~~l~aAVVqLY~a~p~~~~W~~~~~~Gal~lVkD~~ 73 (569)
T KOG3671|consen 10 PRRPPNVPSTLLTSEENETLFKLLGK-KCKTLAAAVVQLYKAYPDPNHWNKTGLCGALCLVKDNA 73 (569)
T ss_pred CCCCCCCcccccchhHHHHHHHHhcc-chhhHHHHHHHHHhhcCChhhhccccCceeEEEeeccc
Confidence 45556643332222222345555555 33334455678999998889999999999999888654
No 18
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=60.69 E-value=21 Score=22.78 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=17.9
Q ss_pred EEEEEeeCCCCCeeeCCceeeEEEEe
Q 034998 41 VTFYEFNIDLSQWSRKDVEGSLFVVK 66 (76)
Q Consensus 41 v~lY~f~~~~~~W~K~~vEGtLFv~~ 66 (76)
+++-.|+..++.|.+.+..|.+-+..
T Consensus 11 avV~~y~~~~~~W~~~~~gg~~~~~~ 36 (106)
T smart00461 11 AVVQLYDADTKKWVPTGEGGAANLVI 36 (106)
T ss_pred EEEEEEeCCCCCeEECCCCCEEEEEE
Confidence 44455566667899999988555544
No 19
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=60.45 E-value=21 Score=22.69 Aligned_cols=44 Identities=20% Similarity=0.421 Sum_probs=32.8
Q ss_pred chHHHhhhCCcE-EEEEeeCCCCCeeeCCceeeEEEEecCCCCCc
Q 034998 30 FIEEILITAAHV-TFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRF 73 (76)
Q Consensus 30 ~I~~Il~~as~v-~lY~f~~~~~~W~K~~vEGtLFv~~R~~~P~~ 73 (76)
..++++....-+ ..|.|-...++|.....++++|.-..+..|.|
T Consensus 54 ~~~~~~~~g~~~~~~yR~~~k~g~~vwvqt~~~~~~n~~~~~~~~ 98 (111)
T PF14598_consen 54 HHREVLQKGQSVSPYYRFRTKNGGYVWVQTKATLFYNPWTSKPEF 98 (111)
T ss_dssp HHHHHHHHSSEEEEEEEEE-TTSSEEEEEEEEEEEEETTTTCEEE
T ss_pred HHHHHhhCCCcCcceEEEEecCCcEEEEEEEEEEEECCCCCCccE
Confidence 345556665444 48999999999999999999999777766644
No 20
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.97 E-value=5.5 Score=31.76 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=17.2
Q ss_pred EEEEEeeCCCCCeeeCCcee
Q 034998 41 VTFYEFNIDLSQWSRKDVEG 60 (76)
Q Consensus 41 v~lY~f~~~~~~W~K~~vEG 60 (76)
-.+|.||+.+++|+|.+..-
T Consensus 113 nd~Y~y~p~~nsW~kl~t~s 132 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRS 132 (381)
T ss_pred eeeEEecCCCChhheecccc
Confidence 46899999999999998654
No 21
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=51.32 E-value=11 Score=27.78 Aligned_cols=23 Identities=39% Similarity=0.752 Sum_probs=20.7
Q ss_pred CCeeeCCceeeEEEEecCCCCCc
Q 034998 51 SQWSRKDVEGSLFVVKRNTQPRF 73 (76)
Q Consensus 51 ~~W~K~~vEGtLFv~~R~~~P~~ 73 (76)
..|.|.+|-|+.|+-.|++-|+-
T Consensus 20 s~wVRlNVGGt~f~TtktTl~rd 42 (210)
T KOG2715|consen 20 SLWVRLNVGGTVFLTTKTTLPRD 42 (210)
T ss_pred eEEEEEecCCEEEEeeeeccccC
Confidence 58999999999999999987764
No 22
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=49.19 E-value=21 Score=28.16 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCcEEEEEeeCCCCCeeeCCceeeEEEEec
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKR 67 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vEGtLFv~~R 67 (76)
.+.=++|.|++ .|++-..|-++|||+.
T Consensus 231 ~prY~ff~~~h---t~eGD~~es~~FIYS~ 257 (342)
T KOG1747|consen 231 GPRYHFFLFKH---THEGDPLESIVFIYSM 257 (342)
T ss_pred CCceEEEeccc---ccCCCCceeEEEEEEC
Confidence 44557888885 8999999999999985
No 23
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=43.53 E-value=12 Score=29.61 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=32.6
Q ss_pred CCCCCCchHhhhhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 6 KLMPNLDQQSTKLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
++.|+=+ .+.|-..|+.||--|.+++.. -+.|+||+||.
T Consensus 79 RI~P~G~----g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dl 119 (469)
T PRK13511 79 RIFPDGY----GEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDT 119 (469)
T ss_pred hcCcCCC----CCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 5666522 358999999999999999987 78999999995
No 24
>PHA03092 semaphorin-like protein; Provisional
Probab=42.56 E-value=24 Score=24.29 Aligned_cols=32 Identities=16% Similarity=0.467 Sum_probs=25.4
Q ss_pred hHHHhhhCCcEEEEEeeCCCCCeeeCCceeeEEE
Q 034998 31 IEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFV 64 (76)
Q Consensus 31 I~~Il~~as~v~lY~f~~~~~~W~K~~vEGtLFv 64 (76)
|.++|++...-+||+|+. ++-.|++.-.+=+|
T Consensus 32 iddvlytgvngavytfsn--n~lnktglan~nyi 63 (134)
T PHA03092 32 IDDVLYTGVNGAVYTFSN--NKLNKTGLANTNYI 63 (134)
T ss_pred hhhhhccccCceEEEecC--CccccccccccceE
Confidence 678999999999999997 77788776554443
No 25
>PLN02814 beta-glucosidase
Probab=41.79 E-value=17 Score=29.43 Aligned_cols=39 Identities=31% Similarity=0.514 Sum_probs=32.7
Q ss_pred CCCCCCchHhhhhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 6 KLMPNLDQQSTKLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
++.|+=+ .+.|-..|+.|+--|.+++.. -+.|+||+||.
T Consensus 102 RI~P~G~----g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl 142 (504)
T PLN02814 102 RLIPNGR----GLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL 142 (504)
T ss_pred hcCcCCC----CCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 4566422 368999999999999999987 89999999995
No 26
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=40.50 E-value=14 Score=29.99 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=33.6
Q ss_pred CCCCCCchHhhhhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 6 KLMPNLDQQSTKLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
++.|+-+.. +.|-..|+-||.-|.+++.. -+.|+||+||.
T Consensus 84 RIfP~g~~~---e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~ 125 (460)
T COG2723 84 RIFPNGDGG---EVNEKGLRFYDRLFDELKARGIEPFVTLYHFDL 125 (460)
T ss_pred EeecCCCCC---CcCHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 455655543 88999999999999999986 79999999995
No 27
>PRK10708 hypothetical protein; Provisional
Probab=40.45 E-value=23 Score=21.58 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=12.3
Q ss_pred eeeEEEEecCCCCC
Q 034998 59 EGSLFVVKRNTQPR 72 (76)
Q Consensus 59 EGtLFv~~R~~~P~ 72 (76)
||++|++....+|.
T Consensus 29 EG~MyLvaL~dYP~ 42 (62)
T PRK10708 29 EGTMYLVSLEDYPL 42 (62)
T ss_pred CcEEEEEEcCcCCC
Confidence 79999999988884
No 28
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=40.43 E-value=13 Score=29.76 Aligned_cols=40 Identities=23% Similarity=0.181 Sum_probs=32.5
Q ss_pred CCCCCCchHhhhhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 6 KLMPNLDQQSTKLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
++.|+=+ ....|-..|+.|+--|.+++.. .+.|+||+||.
T Consensus 98 RI~P~G~---~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dl 139 (478)
T PRK09593 98 RIFPKGD---ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDC 139 (478)
T ss_pred hcccCCC---CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 5666422 1248999999999999999987 68999999995
No 29
>PLN02772 guanylate kinase
Probab=40.26 E-value=23 Score=28.32 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.3
Q ss_pred EEEEEeeCCCCCeeeCCceee
Q 034998 41 VTFYEFNIDLSQWSRKDVEGS 61 (76)
Q Consensus 41 v~lY~f~~~~~~W~K~~vEGt 61 (76)
-.||-||..++.|.+..|.|+
T Consensus 51 ~~v~i~D~~t~~W~~P~V~G~ 71 (398)
T PLN02772 51 IGVQILDKITNNWVSPIVLGT 71 (398)
T ss_pred ceEEEEECCCCcEecccccCC
Confidence 479999999999999999986
No 30
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=38.74 E-value=43 Score=21.10 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=31.4
Q ss_pred HhhCcchHHHhhhCCcEEEEEeeCCCCC--eeeCCcee--eEEEEe
Q 034998 25 QRINPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG--SLFVVK 66 (76)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~lY~f~~~~~~--W~K~~vEG--tLFv~~ 66 (76)
+.++|.++++....+.+.+|+-|.+.+. |++-+|.+ ++.+|+
T Consensus 38 ~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk 83 (113)
T cd02989 38 KIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFK 83 (113)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEE
Confidence 5667888888877777899999987764 77778877 455554
No 31
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=38.18 E-value=15 Score=29.30 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=32.9
Q ss_pred CCCCCCCchHhhhhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 5 GKLMPNLDQQSTKLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 5 ~~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
.++.|+=+ .+.|-..|+.||--|.+++.. -+.|+||+||.
T Consensus 77 sRI~P~g~----~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dl 118 (467)
T TIGR01233 77 SRIFPTGY----GEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDT 118 (467)
T ss_pred hhccCCCC----CCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCC
Confidence 35666522 358999999999999999986 69999999995
No 32
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=38.07 E-value=26 Score=21.32 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=12.3
Q ss_pred eeeEEEEecCCCCC
Q 034998 59 EGSLFVVKRNTQPR 72 (76)
Q Consensus 59 EGtLFv~~R~~~P~ 72 (76)
||++|++....+|.
T Consensus 29 EG~MYLvaL~dYP~ 42 (62)
T PF10781_consen 29 EGTMYLVALEDYPA 42 (62)
T ss_pred CcEEEEEEcCcCCc
Confidence 89999999988884
No 33
>PLN02998 beta-glucosidase
Probab=37.27 E-value=21 Score=28.87 Aligned_cols=39 Identities=31% Similarity=0.508 Sum_probs=32.6
Q ss_pred CCCCCCchHhhhhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 6 KLMPNLDQQSTKLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
++.|+=+ .+.|-..|+.|+--|.+++.. -+.|+||+||.
T Consensus 107 RI~P~G~----g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dl 147 (497)
T PLN02998 107 RLLPSGR----GPINPKGLQYYNNLIDELITHGIQPHVTLHHFDL 147 (497)
T ss_pred hcCcCCC----CCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 5666522 358999999999999999987 88999999985
No 34
>PLN02849 beta-glucosidase
Probab=37.24 E-value=18 Score=29.23 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=32.8
Q ss_pred CCCCCCchHhhhhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 6 KLMPNLDQQSTKLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
++.|+-+ .+.|-..|+.|+--|.+++.. .+.|+||+||.
T Consensus 104 RI~P~G~----g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dl 144 (503)
T PLN02849 104 RLIPNGR----GSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDH 144 (503)
T ss_pred hcCcCCC----CCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCC
Confidence 4666532 368999999999999999987 89999999985
No 35
>PF07193 DUF1408: Protein of unknown function (DUF1408); InterPro: IPR009848 This entry is represented by Bacteriophage bIL285, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Lactococcus lactis and related phage proteins of around 75 residues in length. The function of this family is unknown.
Probab=36.89 E-value=28 Score=21.74 Aligned_cols=16 Identities=38% Similarity=0.983 Sum_probs=13.8
Q ss_pred CeeeCCceeeEEEEecCC
Q 034998 52 QWSRKDVEGSLFVVKRNT 69 (76)
Q Consensus 52 ~W~K~~vEGtLFv~~R~~ 69 (76)
.|++.| |+||+.+|+.
T Consensus 38 t~~r~d--gs~y~~~r~~ 53 (75)
T PF07193_consen 38 TWERPD--GSMYMTSRKK 53 (75)
T ss_pred EEEcCC--CeEEEEEccc
Confidence 799876 9999999975
No 36
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=35.03 E-value=95 Score=19.45 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=29.8
Q ss_pred HHhhhCCcEEEEEeeCCCCCeeeCCceeeEEEEecCC
Q 034998 33 EILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT 69 (76)
Q Consensus 33 ~Il~~as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~ 69 (76)
.|+....-..++.|.....-++...+.+.+++++++.
T Consensus 68 ~l~~~~~i~~i~~f~~~~~vF~~a~v~t~I~~~~k~~ 104 (106)
T PF07669_consen 68 FLLNNTNIKKIIDFGERKKVFEDASVYTCIIIFKKSK 104 (106)
T ss_pred HHhcCCCeeEEEECCCcccCCCCCCcceeEEEEEecC
Confidence 3556677789999998655799999999999988764
No 37
>PF08077 Cm_res_leader: Chloramphenicol resistance gene leader peptide; InterPro: IPR012537 This family consists of chloramphenicol (Cm) resistance gene leader peptides. Inducible resistance to Cm in both Gram-positive and Gram-negative bacteria is controlled by translation attenuation. In translation attenuation, the ribosome-binding-site (RBS) for the resistance determinant is sequestered in a secondary structure domain within the mRNA. Preceding the secondary structure is a short, translated ORF termed the leader. Ribosome stalling in the leader causes the destabilisation of the downstream secondary structure, allowing initiation of translation of the Cm resistance gene [].
Probab=34.01 E-value=35 Score=15.77 Aligned_cols=14 Identities=50% Similarity=0.641 Sum_probs=11.4
Q ss_pred CCceeeEEEEecCC
Q 034998 56 KDVEGSLFVVKRNT 69 (76)
Q Consensus 56 ~~vEGtLFv~~R~~ 69 (76)
.++-|.|-|+.|.+
T Consensus 2 sgvpgalavvtrrt 15 (17)
T PF08077_consen 2 SGVPGALAVVTRRT 15 (17)
T ss_pred CCCCceEEEEEEee
Confidence 47889999998864
No 38
>PLN02153 epithiospecifier protein
Probab=33.45 E-value=31 Score=25.32 Aligned_cols=17 Identities=12% Similarity=0.360 Sum_probs=14.5
Q ss_pred EEEEeeCCCCCeeeCCc
Q 034998 42 TFYEFNIDLSQWSRKDV 58 (76)
Q Consensus 42 ~lY~f~~~~~~W~K~~v 58 (76)
.||.||.++++|++...
T Consensus 218 ~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 218 AVQFFDPASGKWTEVET 234 (341)
T ss_pred ceEEEEcCCCcEEeccc
Confidence 58999999999998754
No 39
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=32.61 E-value=85 Score=18.13 Aligned_cols=43 Identities=12% Similarity=0.249 Sum_probs=28.1
Q ss_pred HhhCcchHHHhhh-CCcEEEEEeeCCCCC--eeeCCcee--eEEEEec
Q 034998 25 QRINPFIEEILIT-AAHVTFYEFNIDLSQ--WSRKDVEG--SLFVVKR 67 (76)
Q Consensus 25 ~R~Dp~I~~Il~~-as~v~lY~f~~~~~~--W~K~~vEG--tLFv~~R 67 (76)
++.+|.++++... ...+.+|..|.+... +.+-++.| ++.+++.
T Consensus 30 ~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 30 KQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRN 77 (97)
T ss_pred HHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEEC
Confidence 4556666776666 678999999865332 35567777 4566653
No 40
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=32.22 E-value=32 Score=18.44 Aligned_cols=13 Identities=46% Similarity=0.779 Sum_probs=9.3
Q ss_pred eeEE-EEecCCCCC
Q 034998 60 GSLF-VVKRNTQPR 72 (76)
Q Consensus 60 GtLF-v~~R~~~P~ 72 (76)
|++| +|+|...|-
T Consensus 2 G~~~s~Ckrr~n~l 15 (32)
T PF10813_consen 2 GSLLSMCKRRHNPL 15 (32)
T ss_pred cceeeeeeccCCcc
Confidence 6666 788877774
No 41
>PLN02153 epithiospecifier protein
Probab=31.72 E-value=34 Score=25.12 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=14.7
Q ss_pred EEEEeeCCCCCeeeCCc
Q 034998 42 TFYEFNIDLSQWSRKDV 58 (76)
Q Consensus 42 ~lY~f~~~~~~W~K~~v 58 (76)
.||.||.++++|++...
T Consensus 277 ~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 277 EGYALDTETLVWEKLGE 293 (341)
T ss_pred cEEEEEcCccEEEeccC
Confidence 68999999999998754
No 42
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=31.40 E-value=22 Score=28.18 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=18.7
Q ss_pred cEEEEEeeCCCCCeeeCCceee
Q 034998 40 HVTFYEFNIDLSQWSRKDVEGS 61 (76)
Q Consensus 40 ~v~lY~f~~~~~~W~K~~vEGt 61 (76)
|--||.||+.+.-|.+-.+.|.
T Consensus 267 fndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 267 FNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred hcceeecccccchheeeeccCC
Confidence 3458999999999999888775
No 43
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=31.38 E-value=25 Score=28.13 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=32.3
Q ss_pred CCCCCCchHhhhhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 6 KLMPNLDQQSTKLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
++.|+=. ....|-..|+.|+--|.+++.. -+.|+||+||.
T Consensus 92 RI~P~G~---~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dl 133 (476)
T PRK09589 92 RIFPQGD---ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEM 133 (476)
T ss_pred hcCcCCC---CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 5666522 1247999999999999999987 68999999994
No 44
>PF12673 DUF3794: Domain of unknown function (DUF3794); InterPro: IPR024300 This presumed domain is functionally uncharacterised. It is found in bacteria, and is approximately 90 amino acids in length.
Probab=31.03 E-value=33 Score=19.99 Aligned_cols=32 Identities=38% Similarity=0.395 Sum_probs=24.2
Q ss_pred cchHHHhhhCCcEEEEEeeCCCCCeeeCCceeeEE
Q 034998 29 PFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLF 63 (76)
Q Consensus 29 p~I~~Il~~as~v~lY~f~~~~~~W~K~~vEGtLF 63 (76)
|.|.+|+..-..+.+-......+ |.-++|.+.
T Consensus 1 P~I~~Il~~~~~v~i~~~~v~~~---kv~v~G~l~ 32 (87)
T PF12673_consen 1 PDIEKILSSDAEVKITEIKVIDD---KVIVEGELN 32 (87)
T ss_pred CChHhEEEeeeEEEEEEEEEECC---EEEEEEEEE
Confidence 67888888888888777765444 778899765
No 45
>PRK10557 hypothetical protein; Provisional
Probab=30.29 E-value=81 Score=22.25 Aligned_cols=31 Identities=10% Similarity=0.295 Sum_probs=22.1
Q ss_pred CCcEEEEEeeCCCC-Ceee-CCceeeEEEEecC
Q 034998 38 AAHVTFYEFNIDLS-QWSR-KDVEGSLFVVKRN 68 (76)
Q Consensus 38 as~v~lY~f~~~~~-~W~K-~~vEGtLFv~~R~ 68 (76)
...|.+|.||.+.+ .|++ .+.|--.|.|+.+
T Consensus 87 ~~sCi~~~YD~n~nG~~~~~~~~~~e~~gyrl~ 119 (192)
T PRK10557 87 QGSCLIVAWDLNSNGRWEGAPHKESEQFGYRLR 119 (192)
T ss_pred CCCeEEEEEcCCCCCcccCCCCCccceEEEEec
Confidence 67789999996644 4997 4555568888744
No 46
>PHA03098 kelch-like protein; Provisional
Probab=29.81 E-value=61 Score=25.21 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=14.2
Q ss_pred EEEEEeeCCCCCeeeCC
Q 034998 41 VTFYEFNIDLSQWSRKD 57 (76)
Q Consensus 41 v~lY~f~~~~~~W~K~~ 57 (76)
-.++.||..+++|++..
T Consensus 406 ~~v~~yd~~t~~W~~~~ 422 (534)
T PHA03098 406 KTVECFSLNTNKWSKGS 422 (534)
T ss_pred ceEEEEeCCCCeeeecC
Confidence 46899999999999753
No 47
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=29.61 E-value=35 Score=27.34 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=32.5
Q ss_pred CCCCCCchHhhhhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 6 KLMPNLDQQSTKLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 6 ~~~p~~~~~~~~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
++.|+=+ ....|-..|+.||.-|..++.. -+.|+||+||.
T Consensus 94 RI~P~G~---~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (477)
T PRK15014 94 RIFPKGD---EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEM 135 (477)
T ss_pred eeccCCC---CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 5666522 1347999999999999999987 68999999996
No 48
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=25.83 E-value=60 Score=23.52 Aligned_cols=16 Identities=13% Similarity=0.476 Sum_probs=13.7
Q ss_pred EEEEeeCCCCCeeeCC
Q 034998 42 TFYEFNIDLSQWSRKD 57 (76)
Q Consensus 42 ~lY~f~~~~~~W~K~~ 57 (76)
.++.||..+++|++.+
T Consensus 272 ~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 272 KILIYNVRTGKWKSIG 287 (323)
T ss_pred eEEEEECCCCeeeEcc
Confidence 5999999999998654
No 49
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=25.63 E-value=1.3e+02 Score=19.99 Aligned_cols=31 Identities=10% Similarity=0.226 Sum_probs=21.4
Q ss_pred CcEEEEEeeCCCCCeeeCCce--e--eEEEEecCC
Q 034998 39 AHVTFYEFNIDLSQWSRKDVE--G--SLFVVKRNT 69 (76)
Q Consensus 39 s~v~lY~f~~~~~~W~K~~vE--G--tLFv~~R~~ 69 (76)
+.+.|..+|+.++.|.-.+-- | .+-+|....
T Consensus 7 ~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~ 41 (111)
T cd01207 7 ARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPR 41 (111)
T ss_pred EEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCC
Confidence 567888999999999987552 4 344555433
No 50
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=25.23 E-value=83 Score=19.38 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=28.3
Q ss_pred HhhCcchHHHhhhCCcEEEEEeeCCCCC-eeeCCcee--eEEEEe
Q 034998 25 QRINPFIEEILITAAHVTFYEFNIDLSQ-WSRKDVEG--SLFVVK 66 (76)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~lY~f~~~~~~-W~K~~vEG--tLFv~~ 66 (76)
+.++|.++++....+.+.+++.|.+.++ .++-+|.+ ++.+|+
T Consensus 40 ~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~~~Pt~~~f~ 84 (113)
T cd02957 40 KILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIKVLPTLLVYK 84 (113)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCCcCCEEEEEE
Confidence 4567778888888888889999976422 33456655 455554
No 51
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=25.12 E-value=50 Score=25.03 Aligned_cols=16 Identities=19% Similarity=0.684 Sum_probs=14.2
Q ss_pred EEEEeeCCCCCeeeCC
Q 034998 42 TFYEFNIDLSQWSRKD 57 (76)
Q Consensus 42 ~lY~f~~~~~~W~K~~ 57 (76)
.-|.||..+.+|.|.+
T Consensus 200 GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHG 215 (342)
T ss_pred EEEEEEcCCcceeecc
Confidence 6799999999999873
No 52
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=23.87 E-value=67 Score=19.65 Aligned_cols=18 Identities=6% Similarity=0.313 Sum_probs=13.0
Q ss_pred hhCCcEEEEEeeCCCCCe
Q 034998 36 ITAAHVTFYEFNIDLSQW 53 (76)
Q Consensus 36 ~~as~v~lY~f~~~~~~W 53 (76)
+..-.+-+|+||+++|+=
T Consensus 36 ~e~~~iKIfkyd~~tNei 53 (63)
T PF14157_consen 36 DEDGQIKIFKYDEDTNEI 53 (63)
T ss_dssp -ETTEEEEEEEETTTTEE
T ss_pred ecCCeEEEEEeCCCCCeE
Confidence 345566789999998864
No 53
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=23.87 E-value=81 Score=21.25 Aligned_cols=26 Identities=19% Similarity=0.011 Sum_probs=22.5
Q ss_pred EEEEEeeCCCCCeeeCCceeeEEEEe
Q 034998 41 VTFYEFNIDLSQWSRKDVEGSLFVVK 66 (76)
Q Consensus 41 v~lY~f~~~~~~W~K~~vEGtLFv~~ 66 (76)
-.-|.+..+..+|.-.+.||+|=||.
T Consensus 52 ~~~~~i~scGr~~~~sGTEGsfdl~d 77 (131)
T PF06355_consen 52 GGSYSICSCGREGSPSGTEGSFDLYD 77 (131)
T ss_pred CCeEEEEEecCCCCCcCceEEEEEEe
Confidence 56678888889999999999999884
No 54
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=23.76 E-value=86 Score=17.96 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=29.5
Q ss_pred HhhCcchHHHhhhCC-cEEEEEeeCCCCC--eeeCCcee--eEEEEec
Q 034998 25 QRINPFIEEILITAA-HVTFYEFNIDLSQ--WSRKDVEG--SLFVVKR 67 (76)
Q Consensus 25 ~R~Dp~I~~Il~~as-~v~lY~f~~~~~~--W~K~~vEG--tLFv~~R 67 (76)
+++.|.+.++..... .+.++..|.+.+. +++-+|.| ++++++.
T Consensus 33 ~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 80 (103)
T PF00085_consen 33 KAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN 80 (103)
T ss_dssp HHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred ccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence 345566777777666 8899999987553 66777777 5665553
No 55
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=23.54 E-value=48 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=18.3
Q ss_pred cEEEEEeeCCCCCeeeCCceee
Q 034998 40 HVTFYEFNIDLSQWSRKDVEGS 61 (76)
Q Consensus 40 ~v~lY~f~~~~~~W~K~~vEGt 61 (76)
.=-||-||.++++|.+.++.|.
T Consensus 189 ~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 189 LNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred eeeeeeeccccccceecccCCC
Confidence 3457888888999999999985
No 56
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=23.07 E-value=44 Score=26.79 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=27.8
Q ss_pred hhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 18 LLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 18 ~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
..|-..|+.||.-|..++.. -+.|+||+||.
T Consensus 105 ~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~ 137 (474)
T PRK09852 105 TPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDV 137 (474)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 47999999999999999987 57889999985
No 57
>cd03600 CLECT_thrombomodulin_like C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CLECT_thrombomodulin_like: C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In these thrombomodulin-like proteins the residues involved in coordinating Ca2+ in the classical MBP-A CTLD are not conserved. TM exerts anti-fibrinolytic and anti-inflammatory activity. TM also regulates blood coagulation in the anticoagulant protein C pathway. In this pathway, the procoagulant properties of thrombin (T) are lost when it binds TM. TM also plays a key role in tumor biology. It is expressed on endothelial cells and on several type of tumor cell including squamous cell carcinoma. Loss of TM expression correlates with advanced stage and poor prognosis. Loss of function of TM func
Probab=22.69 E-value=87 Score=19.96 Aligned_cols=30 Identities=7% Similarity=0.092 Sum_probs=21.6
Q ss_pred CCcEEEEEeeCC---CCCeeeCCceeeE--EEEec
Q 034998 38 AAHVTFYEFNID---LSQWSRKDVEGSL--FVVKR 67 (76)
Q Consensus 38 as~v~lY~f~~~---~~~W~K~~vEGtL--Fv~~R 67 (76)
..+|+.+..+.. ...|...+++..+ |||+.
T Consensus 105 ~~~Cv~l~~~~~~~~~~~W~d~~C~~~~~~fIC~~ 139 (141)
T cd03600 105 SPRCVALSAAGSTPDNLKWKDGPCSARADGYLCKF 139 (141)
T ss_pred CCccEEEEccCCCCCCCccccCCcCCCCCCeEEee
Confidence 356777666542 4689999999975 99984
No 58
>PRK11408 hypothetical protein; Provisional
Probab=22.57 E-value=62 Score=22.70 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=15.5
Q ss_pred EEEEeeCCCCCeeeCCce
Q 034998 42 TFYEFNIDLSQWSRKDVE 59 (76)
Q Consensus 42 ~lY~f~~~~~~W~K~~vE 59 (76)
.||-|.+++.+||.+++.
T Consensus 48 ~v~Y~aPDtL~WE~l~~g 65 (145)
T PRK11408 48 EVYYFAPDTLKWESLELG 65 (145)
T ss_pred eEEEeCCCccceeccCCc
Confidence 479999999999988764
No 59
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=21.25 E-value=1.7e+02 Score=16.49 Aligned_cols=40 Identities=25% Similarity=0.479 Sum_probs=24.4
Q ss_pred hCcchHHHhhhC-CcEEEEEeeCCCCC--eeeCCcee--eEEEEe
Q 034998 27 INPFIEEILITA-AHVTFYEFNIDLSQ--WSRKDVEG--SLFVVK 66 (76)
Q Consensus 27 ~Dp~I~~Il~~a-s~v~lY~f~~~~~~--W~K~~vEG--tLFv~~ 66 (76)
..|.+.++.... ..+.++..|.+.+. |.+-++.+ ++++++
T Consensus 32 ~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~ 76 (101)
T TIGR01068 32 IAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFK 76 (101)
T ss_pred hCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEe
Confidence 344455555332 35888888865443 66778877 566664
No 60
>PF14066 DUF4256: Protein of unknown function (DUF4256)
Probab=20.76 E-value=37 Score=24.48 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=12.9
Q ss_pred EEEeeCCCCCeeeCCc
Q 034998 43 FYEFNIDLSQWSRKDV 58 (76)
Q Consensus 43 lY~f~~~~~~W~K~~v 58 (76)
|=.||..|++|.++.-
T Consensus 118 lg~FD~KTSSWi~TP~ 133 (173)
T PF14066_consen 118 LGEFDLKTSSWIKTPD 133 (173)
T ss_pred hCCCccccchhhcCcH
Confidence 3479999999999843
No 61
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=20.62 E-value=84 Score=25.69 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=15.0
Q ss_pred CCcEEEEEeeCCCCCeee
Q 034998 38 AAHVTFYEFNIDLSQWSR 55 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K 55 (76)
..--+++.||+.+++|.+
T Consensus 346 ~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 346 DRLSSVERYDPRTNQWTP 363 (571)
T ss_pred cccceEEEecCCCCceec
Confidence 344678999999999997
No 62
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=20.60 E-value=1.7e+02 Score=19.68 Aligned_cols=37 Identities=5% Similarity=0.237 Sum_probs=22.3
Q ss_pred CCcEEEEEeeCCCC-CeeeCCcee-eEEEEecCCCCCcc
Q 034998 38 AAHVTFYEFNIDLS-QWSRKDVEG-SLFVVKRNTQPRFQ 74 (76)
Q Consensus 38 as~v~lY~f~~~~~-~W~K~~vEG-tLFv~~R~~~P~~~ 74 (76)
.+.+.|..||+.++ .|.-.+-.. ++-+|.-.....|+
T Consensus 8 ~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfR 46 (111)
T cd01206 8 STRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYR 46 (111)
T ss_pred eeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEE
Confidence 35677888899765 999876421 33344444444443
No 63
>PF11679 DUF3275: Protein of unknown function (DUF3275); InterPro: IPR021693 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=20.01 E-value=51 Score=24.46 Aligned_cols=13 Identities=38% Similarity=0.986 Sum_probs=11.8
Q ss_pred EEeeCCCCCeeeC
Q 034998 44 YEFNIDLSQWSRK 56 (76)
Q Consensus 44 Y~f~~~~~~W~K~ 56 (76)
|.||..++.|.++
T Consensus 202 Y~~d~~~Q~W~~~ 214 (214)
T PF11679_consen 202 YAFDFKSQTWHRK 214 (214)
T ss_pred eeecccccccccC
Confidence 9999999999864
Done!