Query 034998
Match_columns 76
No_of_seqs 100 out of 176
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lyd_A Decapping protein 1; DC 100.0 4.1E-31 1.4E-35 178.6 2.5 66 11-76 8-73 (134)
2 2qkl_A DCP1 protein, SPBC3B9.2 100.0 2.3E-30 7.9E-35 173.7 0.1 62 14-76 6-67 (127)
3 1q67_A Decapping protein invol 99.9 2.6E-24 8.8E-29 156.2 1.0 56 16-71 19-74 (231)
4 1evh_A WH1 domain, protein (ME 88.3 0.31 1.1E-05 31.0 2.6 37 38-74 8-47 (112)
5 1rrp_B Nuclear pore complex pr 88.1 0.54 1.8E-05 30.4 3.7 34 39-73 27-60 (134)
6 1egx_A VAsp, vasodilator-stimu 86.9 0.28 9.6E-06 31.4 1.7 37 38-74 8-48 (115)
7 1xke_A RAN-binding protein 2; 86.6 0.65 2.2E-05 30.0 3.4 30 39-69 13-42 (130)
8 1ddw_A GLGF-domain protein hom 85.5 1.2 4E-05 28.8 4.2 38 38-75 8-47 (120)
9 1qc6_A EVH1 domain from ENA/VA 84.8 1.1 3.7E-05 28.9 3.8 22 38-60 8-29 (130)
10 2y8g_A Ranbp3-B, RAN-binding p 81.0 1.5 5.1E-05 28.7 3.3 29 39-68 20-48 (138)
11 4hat_B RAN-specific GTPase-act 78.0 2.2 7.6E-05 28.0 3.5 30 38-68 27-56 (140)
12 2crf_A RAN binding protein 3; 72.3 3.5 0.00012 27.2 3.3 28 39-67 32-59 (150)
13 1k5d_B RAN-specific GTPase-act 71.5 3.7 0.00013 28.6 3.4 29 39-68 51-81 (201)
14 3m1i_B RAN-specific GTPase-act 70.2 4.2 0.00014 28.3 3.5 30 38-68 78-107 (191)
15 3n7c_A ABR034WP; nuclear pore 69.8 4.4 0.00015 26.2 3.3 28 39-67 16-43 (130)
16 1i2h_A PSD-ZIP45(homer-1C/VESL 68.0 6.1 0.00021 27.0 3.8 37 38-74 13-51 (168)
17 2jp2_A Spred-2, sprouty-relate 61.2 8.7 0.0003 24.8 3.4 30 38-67 17-48 (126)
18 1xod_A Spred1; sprouty, EVH1, 60.4 9 0.00031 24.3 3.3 30 38-67 8-39 (118)
19 2dbc_A PDCL2, unnamed protein 38.7 38 0.0013 20.3 3.6 41 25-66 46-88 (135)
20 4a3y_A Raucaffricine-O-beta-D- 34.5 14 0.00048 28.7 1.3 32 17-48 110-143 (540)
21 3gnp_A OS03G0212800 protein; b 31.7 14 0.00048 28.5 0.9 32 17-48 102-135 (488)
22 3evi_A Phosducin-like protein 31.1 36 0.0012 20.6 2.6 42 25-67 39-82 (118)
23 4ha4_A Beta-galactosidase; TIM 30.0 13 0.00046 28.4 0.5 32 17-48 121-154 (489)
24 2djj_A PDI, protein disulfide- 29.1 48 0.0017 18.6 2.8 42 26-68 42-91 (121)
25 4dde_A 6-phospho-beta-glucosid 29.0 19 0.00064 27.8 1.1 32 17-48 103-136 (480)
26 2woz_A Kelch repeat and BTB do 28.5 28 0.00095 23.3 1.8 17 40-56 277-293 (318)
27 3vii_A Beta-glucosidase; cellu 28.3 19 0.00066 27.8 1.1 32 17-48 99-132 (487)
28 3ptm_A Beta-glucosidase OS4BGl 27.6 20 0.00069 27.8 1.1 32 17-48 122-155 (505)
29 1mke_A WIP - N-WAsp, fusion pr 27.4 62 0.0021 21.5 3.4 30 38-69 45-74 (152)
30 2ifs_A N-WAsp, wiskott-aldrich 26.6 65 0.0022 21.7 3.4 30 38-69 62-91 (169)
31 4asc_A Kelch repeat and BTB do 26.3 36 0.0012 22.7 2.1 17 40-56 267-283 (315)
32 3nvx_A Protein A39; beta-prope 25.8 24 0.00082 27.0 1.2 41 32-73 331-371 (383)
33 3zzx_A Thioredoxin; oxidoreduc 25.4 73 0.0025 18.4 3.2 42 25-66 36-81 (105)
34 3qom_A 6-phospho-beta-glucosid 25.1 24 0.00083 27.1 1.1 32 17-48 107-140 (481)
35 3ta9_A Glycoside hydrolase fam 24.9 19 0.00067 27.5 0.6 32 17-48 98-131 (458)
36 1uwi_A Beta-galactosidase; hyd 24.7 18 0.00063 27.6 0.4 35 17-53 120-156 (489)
37 2uvk_A YJHT; unknown function, 23.8 42 0.0014 22.7 2.0 17 41-57 86-102 (357)
38 2vpj_A Kelch-like protein 12; 23.7 43 0.0015 21.9 2.1 16 41-56 269-284 (301)
39 3syx_A Sprouty-related, EVH1 d 23.7 1.1E+02 0.0036 20.0 4.0 30 38-67 15-46 (130)
40 4euy_A Uncharacterized protein 23.1 1E+02 0.0035 16.9 3.8 42 25-66 34-79 (105)
41 4atd_A Raucaffricine-O-beta-D- 23.0 31 0.001 26.9 1.4 32 17-48 110-143 (513)
42 3r84_A Mediator of RNA polymer 22.9 13 0.00046 22.9 -0.6 22 20-41 6-27 (86)
43 1zgk_A Kelch-like ECH-associat 22.6 47 0.0016 22.1 2.1 18 40-57 230-247 (308)
44 3drz_A BTB/POZ domain-containi 22.6 18 0.00062 21.9 -0.0 20 49-68 3-22 (107)
45 1ukm_B EMS16 B chain, EMS16 su 22.0 49 0.0017 19.1 1.9 32 40-71 94-126 (128)
46 4glq_A Methyl-accepting chemot 22.0 80 0.0027 19.9 3.1 32 17-49 8-40 (171)
47 2xn4_A Kelch-like protein 2; s 21.8 49 0.0017 21.7 2.0 17 41-57 267-283 (302)
48 2xc8_A Gene 22 product; siphov 21.3 55 0.0019 21.5 2.1 13 57-69 108-120 (146)
49 3ii7_A Kelch-like protein 7; p 20.7 55 0.0019 21.5 2.1 17 41-57 24-40 (306)
50 3kvt_A Potassium channel prote 20.4 21 0.00073 22.2 -0.0 20 50-69 3-22 (115)
No 1
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=99.96 E-value=4.1e-31 Score=178.58 Aligned_cols=66 Identities=33% Similarity=0.764 Sum_probs=63.2
Q ss_pred CchHhhhhhcHHHHHhhCcchHHHhhhCCcEEEEEeeCCCCCeeeCCceeeEEEEecCCCCCcccC
Q 034998 11 LDQQSTKLLNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFV 76 (76)
Q Consensus 11 ~~~~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~~P~~~fi 76 (76)
+..++..+|||+||||+||+|++||++|+||+||+||+++++|+|+||||+||||+|+..|+|+||
T Consensus 8 m~~~~~~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~~P~~~~i 73 (134)
T 2lyd_A 8 MADESITRMNLAAIKKIDPYAKEIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNAEPFHSIF 73 (134)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSSSSSEEEE
T ss_pred cChHHHHhhhHHHHhhhCcHHHHHHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccCCCceEEE
Confidence 466788899999999999999999999999999999999999999999999999999999999985
No 2
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=99.95 E-value=2.3e-30 Score=173.75 Aligned_cols=62 Identities=34% Similarity=0.636 Sum_probs=53.5
Q ss_pred HhhhhhcHHHHHhhCcchHHHhhhCCcEEEEEeeCCCCCeeeCCceeeEEEEecCCCCCcccC
Q 034998 14 QSTKLLNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRFQFV 76 (76)
Q Consensus 14 ~~~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~~P~~~fi 76 (76)
..+++|||+||||+||+|++||++|+||+||+||+++++|+|+||||+||||+|+ +|+|+||
T Consensus 6 ~~r~~lNL~vL~R~Dp~I~~Il~~a~~v~vY~f~~~~~~W~K~~iEGtLFv~~R~-~P~~~~i 67 (127)
T 2qkl_A 6 ILRNAVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQ-RARVGYV 67 (127)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEEEEEEECC------CCEEEEEEEEEEEEET-TCCEEEE
T ss_pred HHHHHhHHHHHhhhCchHHHHhccCCeEEEEEecCCCCceEEcCcEEEEEEEEcc-CCceEEE
Confidence 3568999999999999999999999999999999999999999999999999999 9999985
No 3
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=99.88 E-value=2.6e-24 Score=156.19 Aligned_cols=56 Identities=25% Similarity=0.609 Sum_probs=51.5
Q ss_pred hhhhcHHHHHhhCcchHHHhhhCCcEEEEEeeCCCCCeeeCCceeeEEEEecCCCC
Q 034998 16 TKLLNLTVLQRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQP 71 (76)
Q Consensus 16 ~~~lNL~vL~R~Dp~I~~Il~~as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~~P 71 (76)
+++|||+||+|+||.|++||++++||+||+||.++++|+|+++||+||||.|+..|
T Consensus 19 RkaLNlnVL~RyDP~IkqIL~~t~hasvYkfd~~~~eW~K~~~eG~LfIy~Rd~~p 74 (231)
T 1q67_A 19 RKALNFNVIGRYDPKIKQLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLRDVSQ 74 (231)
T ss_dssp ---CCHHHHHHHCTTEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECCC-
T ss_pred HHHhHHHHHHhhChhHHHHHhcCCeEEEEEecCCCCceEecCcEEEEEEEEecCCC
Confidence 68999999999999999999999999999999999999999999999999999887
No 4
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=88.29 E-value=0.31 Score=30.96 Aligned_cols=37 Identities=11% Similarity=0.258 Sum_probs=27.5
Q ss_pred CCcEEEEEeeCCCCCeeeCCce-ee--EEEEecCCCCCcc
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVE-GS--LFVVKRNTQPRFQ 74 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vE-Gt--LFv~~R~~~P~~~ 74 (76)
++-|.||.+|+.++.|.+.+-. |. +-+|+....-.|.
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~~~~yr 47 (112)
T 1evh_A 8 QARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTGNNTFR 47 (112)
T ss_dssp EEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETTTTEEE
T ss_pred EEEEEEEEEcCCCCceEECCCCCCceEEEEEEECCCCEEE
Confidence 4678999999999999999864 33 6777765544443
No 5
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=88.13 E-value=0.54 Score=30.45 Aligned_cols=34 Identities=12% Similarity=0.619 Sum_probs=25.6
Q ss_pred CcEEEEEeeCCCCCeeeCCceeeEEEEecCCCCCc
Q 034998 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRF 73 (76)
Q Consensus 39 s~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~~P~~ 73 (76)
..|-||.||.++++|...|+ |.|-|.+....-.+
T Consensus 27 ~raKL~~~~~~~~~WkerG~-G~lkil~~k~~~k~ 60 (134)
T 1rrp_B 27 NRAKLFRFDVESKEWKERGI-GNVKILRHKTSGKI 60 (134)
T ss_dssp EEEEEEEECSSSSCEEEEEE-EEEEEEEESSSCCC
T ss_pred EEEEEEEEcccCCCcccCcE-EEEEEEEECCCCeE
Confidence 46899999988899998885 78887764433333
No 6
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=86.90 E-value=0.28 Score=31.39 Aligned_cols=37 Identities=11% Similarity=0.258 Sum_probs=28.4
Q ss_pred CCcEEEEEeeCCCCCeeeCCc--ee--eEEEEecCCCCCcc
Q 034998 38 AAHVTFYEFNIDLSQWSRKDV--EG--SLFVVKRNTQPRFQ 74 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~v--EG--tLFv~~R~~~P~~~ 74 (76)
++-|.||.+|+.++.|.+.+. +| ++-+|+-+..-.|.
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~~~~yr 48 (115)
T 1egx_A 8 SSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPTANSFR 48 (115)
T ss_dssp EEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETTTTEEE
T ss_pred EEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCCCCEEE
Confidence 456889999999999999987 67 47777765554444
No 7
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=86.61 E-value=0.65 Score=29.98 Aligned_cols=30 Identities=27% Similarity=0.733 Sum_probs=24.2
Q ss_pred CcEEEEEeeCCCCCeeeCCceeeEEEEecCC
Q 034998 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT 69 (76)
Q Consensus 39 s~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~ 69 (76)
..|-||.||.++++|...|+ |.|.|.+...
T Consensus 13 ~raKL~~~~~~~~~WkERG~-G~lkil~~k~ 42 (130)
T 1xke_A 13 QRVKLFRFDAEVSQWKERGL-GNLKILKNEV 42 (130)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEETT
T ss_pred EEEEEEEEcCCCCCcccCcE-EEEEEEEcCC
Confidence 45889999998899998886 7888876543
No 8
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=85.50 E-value=1.2 Score=28.76 Aligned_cols=38 Identities=5% Similarity=0.229 Sum_probs=26.4
Q ss_pred CCcEEEEEeeCCCC-CeeeCCc-eeeEEEEecCCCCCccc
Q 034998 38 AAHVTFYEFNIDLS-QWSRKDV-EGSLFVVKRNTQPRFQF 75 (76)
Q Consensus 38 as~v~lY~f~~~~~-~W~K~~v-EGtLFv~~R~~~P~~~f 75 (76)
++-|.||.+|+.++ .|.+.+- .|.+-+|.......|.+
T Consensus 8 ~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d~~~~~yRI 47 (120)
T 1ddw_A 8 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRI 47 (120)
T ss_dssp EEEEEEEEECTTTSCSEEESCSSCEEEEEEEETTTTEEEE
T ss_pred EEEEEEEEEcCCCCCceEeCCCCceEEEEEEcCCCCEEEE
Confidence 45688999999885 9999432 35666777665555543
No 9
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=84.82 E-value=1.1 Score=28.91 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=17.6
Q ss_pred CCcEEEEEeeCCCCCeeeCCcee
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVEG 60 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vEG 60 (76)
+.-|.||.+|+++++|.+.+ .|
T Consensus 8 ~~~A~V~~~d~~~~~W~~~g-~G 29 (130)
T 1qc6_A 8 QARASVMVYDDTSKKWVPIK-PG 29 (130)
T ss_dssp EEEEEEEEEETTTTEEEECC---
T ss_pred EEEEEEEEECCCCCceeECC-CC
Confidence 35688999999999999998 66
No 10
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=80.96 E-value=1.5 Score=28.66 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=24.1
Q ss_pred CcEEEEEeeCCCCCeeeCCceeeEEEEecC
Q 034998 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKRN 68 (76)
Q Consensus 39 s~v~lY~f~~~~~~W~K~~vEGtLFv~~R~ 68 (76)
..|-||.||..+++|...|+ |.|-|....
T Consensus 20 ~raKL~~f~~~~~~WkERG~-G~lkil~~k 48 (138)
T 2y8g_A 20 MQCKLFVFDKTSQSWVAVGR-GLLRLNDMA 48 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEEE
T ss_pred EEeEEEEEecCCCCchhceE-EEEEEEEec
Confidence 46889999998899999886 888887643
No 11
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=78.03 E-value=2.2 Score=28.05 Aligned_cols=30 Identities=17% Similarity=0.516 Sum_probs=23.6
Q ss_pred CCcEEEEEeeCCCCCeeeCCceeeEEEEecC
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRN 68 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~ 68 (76)
...|-||.|+.++++|...|+ |.|-|.+..
T Consensus 27 ~~raKLf~f~~~~~~WkerG~-G~lkilk~k 56 (140)
T 4hat_B 27 KVRAKLFRFDKDAKEWKERGT-GDCKFLKNK 56 (140)
T ss_dssp EEEEEEEEEETTTTEEEEEEE-EEEEEEEET
T ss_pred EEeEEEEEEcCCCCCcccccE-EEEEEEEcC
Confidence 346889999988899998875 788876643
No 12
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=72.30 E-value=3.5 Score=27.22 Aligned_cols=28 Identities=14% Similarity=0.350 Sum_probs=22.8
Q ss_pred CcEEEEEeeCCCCCeeeCCceeeEEEEec
Q 034998 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKR 67 (76)
Q Consensus 39 s~v~lY~f~~~~~~W~K~~vEGtLFv~~R 67 (76)
..|-||.||..+++|...|+ |.|-|...
T Consensus 32 ~raKL~~fd~~~~~WkERG~-G~lkil~~ 59 (150)
T 2crf_A 32 MQCKLFVFDKTSQSWVERGR-GLLRLNDM 59 (150)
T ss_dssp EEEEEEEEETTTTEEEEEEE-EEEEEEEE
T ss_pred EEeEEEEEcCCCCCccccee-EEEEEEec
Confidence 46899999998999998875 77777764
No 13
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=71.50 E-value=3.7 Score=28.63 Aligned_cols=29 Identities=21% Similarity=0.630 Sum_probs=23.3
Q ss_pred CcEEEEEe--eCCCCCeeeCCceeeEEEEecC
Q 034998 39 AHVTFYEF--NIDLSQWSRKDVEGSLFVVKRN 68 (76)
Q Consensus 39 s~v~lY~f--~~~~~~W~K~~vEGtLFv~~R~ 68 (76)
..|-||.| |..+++|.-.|+ |.|-|.+..
T Consensus 51 ~RaKLf~f~~d~~~~~WKERGv-G~lkIlk~k 81 (201)
T 1k5d_B 51 MRAKLFRFASENDLPEWKERGT-GDVKLLKHK 81 (201)
T ss_dssp EEEEEEEECCTTSSCCEEEEEE-EEEEEEECS
T ss_pred EeeeEEEecccccCCCccccce-EEEEEEEcC
Confidence 46899999 778899998886 788877654
No 14
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=70.24 E-value=4.2 Score=28.31 Aligned_cols=30 Identities=17% Similarity=0.531 Sum_probs=24.0
Q ss_pred CCcEEEEEeeCCCCCeeeCCceeeEEEEecC
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRN 68 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~ 68 (76)
...|-||.|+..+++|.-.|+ |.|-|.+..
T Consensus 78 ~~RaKLf~f~~~~~~WKERGv-G~lkilk~k 107 (191)
T 3m1i_B 78 KVRAKLFRFDADAKEWKERGT-GDCKFLKNK 107 (191)
T ss_dssp EEEEEEEEEETTTTEEEEEEE-EEEEEEEET
T ss_pred EEeeEEEEEecCCCCccceeE-EEEEEEEcC
Confidence 357899999988899998876 777776644
No 15
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=69.82 E-value=4.4 Score=26.17 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=19.9
Q ss_pred CcEEEEEeeCCCCCeeeCCceeeEEEEec
Q 034998 39 AHVTFYEFNIDLSQWSRKDVEGSLFVVKR 67 (76)
Q Consensus 39 s~v~lY~f~~~~~~W~K~~vEGtLFv~~R 67 (76)
..|-||.||..+++|...|+ |.|-|.+.
T Consensus 16 ~raKL~~f~~~~~~WkerG~-G~lkil~~ 43 (130)
T 3n7c_A 16 EKAKLLIFDSDTKGYTSRGV-GELKLLRK 43 (130)
T ss_dssp EEEEEEEECC---CEEEEEE-EEEEEEEE
T ss_pred EEEEEEEEeCCCCCchhcce-EEEEEEEe
Confidence 45889999998899997774 77877654
No 16
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=67.97 E-value=6.1 Score=27.00 Aligned_cols=37 Identities=5% Similarity=0.226 Sum_probs=24.9
Q ss_pred CCcEEEEEeeCCCC-CeeeCCc-eeeEEEEecCCCCCcc
Q 034998 38 AAHVTFYEFNIDLS-QWSRKDV-EGSLFVVKRNTQPRFQ 74 (76)
Q Consensus 38 as~v~lY~f~~~~~-~W~K~~v-EGtLFv~~R~~~P~~~ 74 (76)
++-|.||.+|+.++ .|.+.+- .|.+-||.......|.
T Consensus 13 s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~d~~rnsyR 51 (168)
T 1i2h_A 13 STRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYR 51 (168)
T ss_dssp EEEEEEEEECTTSSCCSEESCSSCEEEEEEEETTTTEEE
T ss_pred EEEEEEEEECCCCCCceeecCCCCeEEEEEEcCCCCEEE
Confidence 45689999999876 9999543 3455566655544444
No 17
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.19 E-value=8.7 Score=24.79 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=22.2
Q ss_pred CCcEEEEEeeCCCCCeeeCCceee--EEEEec
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVEGS--LFVVKR 67 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vEGt--LFv~~R 67 (76)
++-|.||.+|+.++.|.+.+--|. .-||..
T Consensus 17 ~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~ 48 (126)
T 2jp2_A 17 RVKAVVMTRDDSSGGWFPQEGGGISRVGVCKV 48 (126)
T ss_dssp EEEEEEEEECTTSSSSEECSCCSCEEEEEECC
T ss_pred EEEEEEeeEcCCCCCEeeCCCCCcccEEEEEe
Confidence 567899999999999999886442 344543
No 18
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=60.38 E-value=9 Score=24.32 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCcEEEEEeeCCCCCeeeCCcee--eEEEEec
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVEG--SLFVVKR 67 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vEG--tLFv~~R 67 (76)
++-|.||.+|+.++.|.+.+--| .+-||..
T Consensus 8 ~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~ 39 (118)
T 1xod_A 8 RVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKT 39 (118)
T ss_dssp EEEEEEEEECSSSSCEEEGGGCCCEEEEEECC
T ss_pred EEEEEEeeEcCCCCCEeeCCCCCcccEEEEEe
Confidence 45789999999999999987544 2455543
No 19
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.74 E-value=38 Score=20.26 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=29.5
Q ss_pred HhhCcchHHHhhhCCcEEEEEeeCCCCCeeeCCcee--eEEEEe
Q 034998 25 QRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG--SLFVVK 66 (76)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~lY~f~~~~~~W~K~~vEG--tLFv~~ 66 (76)
++..|.+.++...-..+.++..|.+... ++-+|.| |+++|+
T Consensus 46 ~~~~p~l~~la~~~~~v~~~~vd~~~~~-~~~~i~~~Pt~~~~~ 88 (135)
T 2dbc_A 46 LVVNQHLSVLARKFPETKFVKAIVNSCI-EHYHDNCLPTIFVYK 88 (135)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECCSSSC-SSCCSSCCSEEEEES
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEhhcCc-ccCCCCCCCEEEEEE
Confidence 4566777777777677999999976554 6677877 566664
No 20
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A {Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Probab=34.47 E-value=14 Score=28.75 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=29.5
Q ss_pred hhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 17 KLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
.+.|-..|+-||--|.+++.. -+.|+||+||.
T Consensus 110 g~~N~~Gl~fY~~lid~l~~~GIeP~VTL~H~dl 143 (540)
T 4a3y_A 110 GGVNKEGINYYNNLIDGLLANGIKPFVTLFHWDV 143 (540)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCccceeccCCCC
Confidence 578999999999999999987 79999999995
No 21
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase; HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A* 3gnr_A*
Probab=31.75 E-value=14 Score=28.52 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=29.3
Q ss_pred hhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 17 KLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
.+.|-.-|+.||.-|.+++.. -+.|+||+||.
T Consensus 102 g~~N~~Gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (488)
T 3gnp_A 102 GQVNQAGIDHYNKLIDALLAKGIQPYVTLYHWDL 135 (488)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 578999999999999999986 89999999995
No 22
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=31.10 E-value=36 Score=20.64 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=31.1
Q ss_pred HhhCcchHHHhhhCCcEEEEEeeCCCCCeeeCCcee--eEEEEec
Q 034998 25 QRINPFIEEILITAAHVTFYEFNIDLSQWSRKDVEG--SLFVVKR 67 (76)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~lY~f~~~~~~W~K~~vEG--tLFv~~R 67 (76)
+.++|.++++...-+.+.+++-|.+.. -++-+|.+ ||.+|+.
T Consensus 39 ~~~~p~l~~la~~~~~v~f~kvd~d~~-~~~~~v~~~PT~~~fk~ 82 (118)
T 3evi_A 39 LLVNQHLSLLARKFPETKFVKAIVNSC-IQHYHDNCLPTIFVYKN 82 (118)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEGGGT-STTCCGGGCSEEEEEET
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEhHHh-HHHCCCCCCCEEEEEEC
Confidence 567788888888878889999997654 25667777 5666653
No 23
>4ha4_A Beta-galactosidase; TIM barrel, beta-glycosidase, hydrolase; HET: GOL PG6; 1.37A {Acidilobus saccharovorans} PDB: 4ha3_A* 1uws_A* 1uwr_A* 1uwq_A* 1uwt_A* 1uwu_A* 2ceq_A* 2cer_A* 4eam_A 4ean_A
Probab=29.95 E-value=13 Score=28.38 Aligned_cols=32 Identities=9% Similarity=0.292 Sum_probs=29.5
Q ss_pred hhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 17 KLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
.+.|-.-|+-||.-|.+++.. -+.|+||+||.
T Consensus 121 ~~~N~~Gl~fY~~lid~Ll~~GIeP~VTL~H~Dl 154 (489)
T 4ha4_A 121 KMANRDAINHYREMFSDLRSRGITFILNLYHWPL 154 (489)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTTCEEEEESCSSCC
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCeeeEeecCCCc
Confidence 567999999999999999987 89999999996
No 24
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=29.10 E-value=48 Score=18.64 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=28.0
Q ss_pred hhCcchHHHhhhCC------cEEEEEeeCCCCCeeeCCcee--eEEEEecC
Q 034998 26 RINPFIEEILITAA------HVTFYEFNIDLSQWSRKDVEG--SLFVVKRN 68 (76)
Q Consensus 26 R~Dp~I~~Il~~as------~v~lY~f~~~~~~W~K~~vEG--tLFv~~R~ 68 (76)
+..|.+.++...-. .+.++..|.+.+...+ +|.| +++++...
T Consensus 42 ~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~-~v~~~Pt~~~~~~~ 91 (121)
T 2djj_A 42 ALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD-EIQGFPTIKLYPAG 91 (121)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSS-CCSSSSEEEEECSS
T ss_pred HhhHHHHHHHHHHhhcccCCceEEEEEECccccccc-ccCcCCeEEEEeCc
Confidence 34444555544322 6888999988777767 8888 67777655
No 25
>4dde_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: BG6; 1.45A {Streptococcus mutans} PDB: 3pn8_A* 4f66_A* 4gpn_A* 4f79_A*
Probab=28.99 E-value=19 Score=27.78 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=29.1
Q ss_pred hhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 17 KLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
.+.|-.-|+-||.-|.+++.. -+.|+||+||.
T Consensus 103 g~~N~~Gl~fY~~lid~l~~~GIeP~VTL~H~Dl 136 (480)
T 4dde_A 103 AEPNEAGLQFYDDLFDECLKYGIEPVVTLSHFEL 136 (480)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCcceEEeeCCCC
Confidence 478999999999999999986 89999999995
No 26
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=28.54 E-value=28 Score=23.31 Aligned_cols=17 Identities=12% Similarity=0.425 Sum_probs=14.6
Q ss_pred cEEEEEeeCCCCCeeeC
Q 034998 40 HVTFYEFNIDLSQWSRK 56 (76)
Q Consensus 40 ~v~lY~f~~~~~~W~K~ 56 (76)
.-.+|.||.++++|++.
T Consensus 277 ~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 277 VNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp CCCEEEEETTTTEEEEE
T ss_pred eeeEEEEeCCCCEehhh
Confidence 45689999999999986
No 27
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET: BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A* 3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A* 3vij_A* 3vik_A* 3vil_A*
Probab=28.29 E-value=19 Score=27.79 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=29.3
Q ss_pred hhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 17 KLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
.+.|-.-|+-||.-|.+++.. -+.|+||+||.
T Consensus 99 g~~N~~Gl~fY~~lId~Ll~~GIeP~VTL~H~Dl 132 (487)
T 3vii_A 99 NIVNQDGIDYYNNLINELLANGIEPMVTMYHWDL 132 (487)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEEecCCC
Confidence 478999999999999999987 79999999995
No 28
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase, hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A* 3ptq_A*
Probab=27.55 E-value=20 Score=27.81 Aligned_cols=32 Identities=19% Similarity=0.335 Sum_probs=29.2
Q ss_pred hhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 17 KLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
.+.|-.-|+-||.-|.+++.. -+.|+||+||.
T Consensus 122 g~vN~~Gl~fY~~lid~l~~~GIeP~VTL~HwDl 155 (505)
T 3ptm_A 122 GGVNKEGIKYYNNLINELLSKGVQPFITLFHWDS 155 (505)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 478999999999999999986 89999999995
No 29
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=27.45 E-value=62 Score=21.48 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=23.6
Q ss_pred CCcEEEEEeeCCCCCeeeCCceeeEEEEecCC
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT 69 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~ 69 (76)
++-|=||.-+.. ++|.+. ..|.+-+++-..
T Consensus 45 taVaqLy~a~~~-~~W~~~-~~Gal~~VkD~~ 74 (152)
T 1mke_A 45 SAVVQLYAADRN-CMWSKK-CSGVACLVKDNP 74 (152)
T ss_dssp EEEEEEEEEETT-TEEEEE-EEEEEEEEEETT
T ss_pred EeeEEEEEECCC-CceEec-CceEEEEEEECC
Confidence 556779999875 799996 799998887543
No 30
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=26.59 E-value=65 Score=21.73 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=23.6
Q ss_pred CCcEEEEEeeCCCCCeeeCCceeeEEEEecCC
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNT 69 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~ 69 (76)
++-|-||.-+.. +.|.+. ..|.+-+++-..
T Consensus 62 taVaqLy~a~~~-~~W~~~-~~Gal~~vkD~~ 91 (169)
T 2ifs_A 62 SAVVQLYAADRN-CMWSKK-CSGVACLVKDNP 91 (169)
T ss_dssp EEEEEEEEEETT-TEEEEE-EEEEEEEEEETT
T ss_pred EEEEEEEEECCC-CeeEec-CceEEEEEEECC
Confidence 556779999875 799996 799998887643
No 31
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=26.32 E-value=36 Score=22.71 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=14.6
Q ss_pred cEEEEEeeCCCCCeeeC
Q 034998 40 HVTFYEFNIDLSQWSRK 56 (76)
Q Consensus 40 ~v~lY~f~~~~~~W~K~ 56 (76)
.-.+|.||.++++|++.
T Consensus 267 ~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 267 LNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEEEETTTTEEEEE
T ss_pred cCcEEEecCCCChhhhh
Confidence 35689999999999976
No 32
>3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A {Vaccinia virus} PDB: 3nvn_A*
Probab=25.76 E-value=24 Score=26.99 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=32.9
Q ss_pred HHHhhhCCcEEEEEeeCCCCCeeeCCceeeEEEEecCCCCCc
Q 034998 32 EEILITAAHVTFYEFNIDLSQWSRKDVEGSLFVVKRNTQPRF 73 (76)
Q Consensus 32 ~~Il~~as~v~lY~f~~~~~~W~K~~vEGtLFv~~R~~~P~~ 73 (76)
-++++.++. ++|+||..+++=....+..-||-+--.+.|.|
T Consensus 331 y~VlflgTn-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (383)
T 3nvx_A 331 YRIYFIKEN-SIYSFDTKSKQTRSSQVDARLFSVMVTSKPLF 371 (383)
T ss_dssp EEEEEEETT-EEEEEETTTCCEEEEECSSCEEEEEESSSEEE
T ss_pred EEEEEEecc-cceeccccccccchhhhcceeeEEEeecCceE
Confidence 346666677 89999998888888899999998877777765
No 33
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=25.44 E-value=73 Score=18.45 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=30.5
Q ss_pred HhhCcchHHHhhhCCcEEEEEeeCCCCC--eeeCCcee--eEEEEe
Q 034998 25 QRINPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG--SLFVVK 66 (76)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~lY~f~~~~~~--W~K~~vEG--tLFv~~ 66 (76)
++..|.++++....+.+.+++.|.+.+. ..+-+|.| |+.+++
T Consensus 36 ~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~ 81 (105)
T 3zzx_A 36 KMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMK 81 (105)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred cCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCCeecEEEEEE
Confidence 4566777888888888999999976543 34668888 666664
No 34
>3qom_A 6-phospho-beta-glucosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, glycoside hydrolase, hydrolase; HET: BGC; 1.50A {Lactobacillus plantarum} SCOP: c.1.8.0 PDB: 4gze_A
Probab=25.07 E-value=24 Score=27.15 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=29.0
Q ss_pred hhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 17 KLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
.+.|-.-|+-||.-|.+++.. -+.|+||+||.
T Consensus 107 g~~N~~Gl~fY~~lid~l~~~GIeP~VTL~H~Dl 140 (481)
T 3qom_A 107 SEPNEAGLQFYDDLFDECLKNGIQPVVTLAHFEM 140 (481)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCeEEEEEccCCC
Confidence 468999999999999999986 89999999995
No 35
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A {Halothermothrix orenii}
Probab=24.91 E-value=19 Score=27.52 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.1
Q ss_pred hhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 17 KLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
.+.|-.-|+.||.-|.+++.. -+.|+||+||.
T Consensus 98 g~~N~~Gl~fY~~lid~l~~~GIeP~vTL~H~dl 131 (458)
T 3ta9_A 98 GRVNQKGLDFYKRLVDNLLKANIRPMITLYHWDL 131 (458)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 478999999999999999986 89999999995
No 36
>1uwi_A Beta-galactosidase; hydrolase, beta-glycosidase, glycosidase; 2.55A {Sulfolobus solfataricus} SCOP: c.1.8.4 PDB: 1gow_A
Probab=24.73 E-value=18 Score=27.61 Aligned_cols=35 Identities=11% Similarity=0.301 Sum_probs=30.8
Q ss_pred hhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeCCCCCe
Q 034998 17 KLLNLTVLQRINPFIEEILIT--AAHVTFYEFNIDLSQW 53 (76)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~~~~~W 53 (76)
...|-.-|+-||.-|.+++.. -+.|+||+||. .+|
T Consensus 120 ~~~N~~Gl~fY~~lid~Ll~~GIeP~VTL~H~Dl--P~~ 156 (489)
T 1uwi_A 120 EYANKDALNHYREIFKDLKSRGLYFIQNMYHWPL--PLW 156 (489)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTCEEEEESCCSCC--BGG
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCcceEEeecCCc--cHH
Confidence 568999999999999999986 89999999996 455
No 37
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=23.76 E-value=42 Score=22.68 Aligned_cols=17 Identities=12% Similarity=0.282 Sum_probs=14.4
Q ss_pred EEEEEeeCCCCCeeeCC
Q 034998 41 VTFYEFNIDLSQWSRKD 57 (76)
Q Consensus 41 v~lY~f~~~~~~W~K~~ 57 (76)
..+|.||..+++|++..
T Consensus 86 ~~v~~yd~~~~~W~~~~ 102 (357)
T 2uvk_A 86 NDVHKYNPKTNSWVKLM 102 (357)
T ss_dssp CCEEEEETTTTEEEECS
T ss_pred ccEEEEeCCCCcEEECC
Confidence 45899999999999864
No 38
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=23.73 E-value=43 Score=21.93 Aligned_cols=16 Identities=6% Similarity=0.229 Sum_probs=14.3
Q ss_pred EEEEEeeCCCCCeeeC
Q 034998 41 VTFYEFNIDLSQWSRK 56 (76)
Q Consensus 41 v~lY~f~~~~~~W~K~ 56 (76)
-.+|.||.++++|++.
T Consensus 269 ~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 269 SSIECYDPIIDSWEVV 284 (301)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred ccEEEEcCCCCeEEEc
Confidence 6789999999999975
No 39
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=23.72 E-value=1.1e+02 Score=19.96 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=23.2
Q ss_pred CCcEEEEEeeCCCCCeeeCCcee--eEEEEec
Q 034998 38 AAHVTFYEFNIDLSQWSRKDVEG--SLFVVKR 67 (76)
Q Consensus 38 as~v~lY~f~~~~~~W~K~~vEG--tLFv~~R 67 (76)
..-|.|..+|+.++.|.-.+=.| ..+||..
T Consensus 15 ~~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~ 46 (130)
T 3syx_A 15 RVRAVVMTRDDSSGGWLPLGGSGLSSVTVFKV 46 (130)
T ss_dssp EEEEEEEEECSSSSCEEESSSSCCEEEEEEEE
T ss_pred EEEEEeeeEcCCCCceEeCCCCCCceEEEEec
Confidence 45689999999999999986434 3667774
No 40
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=23.07 E-value=1e+02 Score=16.91 Aligned_cols=42 Identities=14% Similarity=0.004 Sum_probs=23.8
Q ss_pred HhhCcchHHHhhhCCcEEEEEeeCCCCC--eeeCCcee--eEEEEe
Q 034998 25 QRINPFIEEILITAAHVTFYEFNIDLSQ--WSRKDVEG--SLFVVK 66 (76)
Q Consensus 25 ~R~Dp~I~~Il~~as~v~lY~f~~~~~~--W~K~~vEG--tLFv~~ 66 (76)
++..|.+.++....+.+.++..|.+.+. ..+-+|.| ++++++
T Consensus 34 ~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 79 (105)
T 4euy_A 34 DVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFY 79 (105)
T ss_dssp HHHHHHHHHHHHTCTTEEEEEEEECCC---------CCCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCCCCEEEEEe
Confidence 3456677777776677899988865443 34557777 455554
No 41
>4atd_A Raucaffricine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.10A {Rauvolfia serpentina} PDB: 4a3y_A 3u5u_A 3u57_A 3u5y_A*
Probab=23.05 E-value=31 Score=26.93 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=29.2
Q ss_pred hhhcHHHHHhhCcchHHHhhh--CCcEEEEEeeC
Q 034998 17 KLLNLTVLQRINPFIEEILIT--AAHVTFYEFNI 48 (76)
Q Consensus 17 ~~lNL~vL~R~Dp~I~~Il~~--as~v~lY~f~~ 48 (76)
.+.|-.-|+.||.-|.+++.. -+.|+||+||.
T Consensus 110 g~~N~~Gl~~Y~~lid~l~~~GI~P~VTL~H~dl 143 (513)
T 4atd_A 110 GGVNKEGINYYNNLIDGLLANGIKPFVTLFHWDV 143 (513)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTTCEEEEEEESSCC
T ss_pred CCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence 478999999999999999986 79999999995
No 42
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=22.86 E-value=13 Score=22.87 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.3
Q ss_pred cHHHHHhhCcchHHHhhhCCcE
Q 034998 20 NLTVLQRINPFIEEILITAAHV 41 (76)
Q Consensus 20 NL~vL~R~Dp~I~~Il~~as~v 41 (76)
+|..|-.+|..|.++|..++.+
T Consensus 6 RL~sL~~ID~~i~sLL~~as~~ 27 (86)
T 3r84_A 6 RLKSLNDIETQLCSMLQEASQV 27 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999998764
No 43
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=22.63 E-value=47 Score=22.10 Aligned_cols=18 Identities=6% Similarity=0.329 Sum_probs=14.7
Q ss_pred cEEEEEeeCCCCCeeeCC
Q 034998 40 HVTFYEFNIDLSQWSRKD 57 (76)
Q Consensus 40 ~v~lY~f~~~~~~W~K~~ 57 (76)
.-.+|.||.++++|++..
T Consensus 230 ~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 230 LNSVERYDVETETWTFVA 247 (308)
T ss_dssp CCCEEEEETTTTEEEECC
T ss_pred cceEEEEeCCCCcEEECC
Confidence 356899999999999753
No 44
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=22.57 E-value=18 Score=21.92 Aligned_cols=20 Identities=35% Similarity=0.816 Sum_probs=16.2
Q ss_pred CCCCeeeCCceeeEEEEecC
Q 034998 49 DLSQWSRKDVEGSLFVVKRN 68 (76)
Q Consensus 49 ~~~~W~K~~vEGtLFv~~R~ 68 (76)
+.++|.+.+|-|+.|...++
T Consensus 3 ~~~~~v~LNVGG~~f~t~~~ 22 (107)
T 3drz_A 3 SVSKWVRLNVGGTYFLTTRQ 22 (107)
T ss_dssp --CCEEEEEETTEEEEEEHH
T ss_pred CCCCEEEEEECCEEEEECHH
Confidence 45789999999999998875
No 45
>1ukm_B EMS16 B chain, EMS16 subunit B; domain swapping, C-type lectin, toxin; HET: NAG; 1.90A {Echis multisquamatus} SCOP: d.169.1.1 PDB: 1v7p_B*
Probab=22.03 E-value=49 Score=19.12 Aligned_cols=32 Identities=31% Similarity=0.311 Sum_probs=18.6
Q ss_pred cEEEEEeeCCCCCeeeCCceee-EEEEecCCCC
Q 034998 40 HVTFYEFNIDLSQWSRKDVEGS-LFVVKRNTQP 71 (76)
Q Consensus 40 ~v~lY~f~~~~~~W~K~~vEGt-LFv~~R~~~P 71 (76)
+|+..........|...++.-. -|||++...|
T Consensus 94 ~C~~~~~~~~~~~w~~~~C~~~~~fICe~~~~~ 126 (128)
T 1ukm_B 94 YCTVMVVKPDRIFWFTRGCEKSVSFVCKFLTDP 126 (128)
T ss_dssp EEEEEEECSSCEEEEEEETTSCEEEEEEEEC--
T ss_pred CcEEEeCCCCCCeEeCCCCCCCcCeEeeecCCC
Confidence 5665555433357876665544 4788887665
No 46
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=22.01 E-value=80 Score=19.90 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=21.3
Q ss_pred hhhcHHHH-HhhCcchHHHhhhCCcEEEEEeeCC
Q 034998 17 KLLNLTVL-QRINPFIEEILITAAHVTFYEFNID 49 (76)
Q Consensus 17 ~~lNL~vL-~R~Dp~I~~Il~~as~v~lY~f~~~ 49 (76)
..+|+..+ +..=..|.+++ .+..|.+|.|+++
T Consensus 8 ~sldl~~il~~~v~~v~~~l-~~DRv~Iy~f~~d 40 (171)
T 4glq_A 8 ELRDRQAIFETLVAKGRELL-ACDRVIVYAFDDN 40 (171)
T ss_dssp CTTHHHHHHHHHHHHHHHHH-TCSEEEEEEECTT
T ss_pred hcCCHHHHHHHHHHHHHHHH-CCCeEEEEEEeCC
Confidence 44555443 55555566665 4799999999974
No 47
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=21.83 E-value=49 Score=21.74 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=14.3
Q ss_pred EEEEEeeCCCCCeeeCC
Q 034998 41 VTFYEFNIDLSQWSRKD 57 (76)
Q Consensus 41 v~lY~f~~~~~~W~K~~ 57 (76)
..++.||.++++|++..
T Consensus 267 ~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 267 ASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp CCEEEEETTTTEEEECS
T ss_pred ccEEEEcCCCCeEEECC
Confidence 45899999999999864
No 48
>2xc8_A Gene 22 product; siphoviridae, GRAM-positive phage, viral protein; 2.35A {Bacillus phage SPP1}
Probab=21.32 E-value=55 Score=21.46 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=10.2
Q ss_pred CceeeEEEEecCC
Q 034998 57 DVEGSLFVVKRNT 69 (76)
Q Consensus 57 ~vEGtLFv~~R~~ 69 (76)
--||++|+|+...
T Consensus 108 tregtiflyeked 120 (146)
T 2xc8_A 108 TREGTIFLYEKED 120 (146)
T ss_dssp CEEEEEEEEEECC
T ss_pred ccceeEEEEeccc
Confidence 4589999998653
No 49
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=20.66 E-value=55 Score=21.54 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.1
Q ss_pred EEEEEeeCCCCCeeeCC
Q 034998 41 VTFYEFNIDLSQWSRKD 57 (76)
Q Consensus 41 v~lY~f~~~~~~W~K~~ 57 (76)
-.+|.||..+++|++..
T Consensus 24 ~~~~~~d~~~~~W~~~~ 40 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIR 40 (306)
T ss_dssp TSEEEEETTTTEEEECC
T ss_pred ceEEEecCCCCCEecCC
Confidence 45789999999999763
No 50
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=20.39 E-value=21 Score=22.24 Aligned_cols=20 Identities=15% Similarity=0.016 Sum_probs=16.7
Q ss_pred CCCeeeCCceeeEEEEecCC
Q 034998 50 LSQWSRKDVEGSLFVVKRNT 69 (76)
Q Consensus 50 ~~~W~K~~vEGtLFv~~R~~ 69 (76)
+++|.+.+|-|+.|...+++
T Consensus 3 ~~~~V~LNVGG~~f~T~~~T 22 (115)
T 3kvt_A 3 AENRVIINVGGIRHETYKAT 22 (115)
T ss_dssp -CCEEEEEETTEEEEEEHHH
T ss_pred CCCEEEEEECCEEEEecHHH
Confidence 47899999999999998753
Done!