BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034999
         (76 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LR3|A Chain A, Solution Structure Of The Anti-Fungal Defensin Def4
          (Mtr_8g070770) From Medicago Truncatula (Barrel Clover)
          Length = 47

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/27 (77%), Positives = 23/27 (85%)

Query: 30 RICESQSHRFKGPCVSKSNCAAVCQTE 56
          R CESQSH+FKGPC S  NCA+VCQTE
Sbjct: 1  RTCESQSHKFKGPCASDHNCASVCQTE 27


>pdb|1GPT|A Chain A, Solution Structure Of Gamma 1-H And Gamma 1-P Thionins
          From Barley And Wheat Endosperm Determined By 1h-Nmr: A
          Structural Motif Common To Toxic Arthropod Proteins
          Length = 47

 Score = 37.0 bits (84), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 18/27 (66%)

Query: 30 RICESQSHRFKGPCVSKSNCAAVCQTE 56
          RIC  +S  FKGPCVS  NCA VC  E
Sbjct: 1  RICRRRSAGFKGPCVSNKNCAQVCMQE 27


>pdb|1GPS|A Chain A, Solution Structure Of Gamma 1-H And Gamma 1-P Thionins
          From Barley And Wheat Endosperm Determined By 1h-Nmr: A
          Structural Motif Common To Toxic Arthropod Proteins
          Length = 47

 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 16/27 (59%), Positives = 19/27 (70%)

Query: 30 RICESQSHRFKGPCVSKSNCAAVCQTE 56
          +IC  +S  FKGPC+S  NCA VCQ E
Sbjct: 1  KICRRRSAGFKGPCMSNKNCAQVCQQE 27


>pdb|2KSK|A Chain A, Solution Structure Of Sugarcane Defensin 5
          Length = 71

 Score = 29.6 bits (65), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 31 ICESQSHRFKGPCVSKSNCAAVCQTE 56
          IC+S+SH +KG C+   +C A C  E
Sbjct: 8  ICKSRSHEYKGRCIQDMDCNAACVKE 33


>pdb|2LJ7|A Chain A, 3d Solution Structure Of Plant Defensin Lc-Def
          Length = 47

 Score = 29.3 bits (64), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 30 RICESQSHRFKGPCVSKSNCAAVCQ 54
          + CE+ S  FKGPC+   NC   C+
Sbjct: 1  KTCENLSDSFKGPCIPDGNCNKHCK 25


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.124    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 981,122
Number of Sequences: 62578
Number of extensions: 15819
Number of successful extensions: 45
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 10
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)