Query 034999
Match_columns 76
No_of_seqs 100 out of 373
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00304 Gamma-thionin: Gamma- 99.7 1.4E-18 3E-23 94.7 1.6 47 30-76 1-47 (47)
2 smart00505 Knot1 Knottins. Kno 99.1 5.6E-11 1.2E-15 63.3 2.7 44 31-74 1-45 (45)
3 cd00107 Knot1 The "knottin" fo 98.9 1.5E-09 3.3E-14 54.8 2.7 33 41-73 1-33 (33)
4 PF01097 Defensin_2: Arthropod 98.1 3E-06 6.4E-11 43.3 2.3 32 41-73 3-34 (34)
5 PF10868 DUF2667: Protein of u 98.0 5.9E-06 1.3E-10 50.5 3.2 45 26-74 26-79 (90)
6 PF00537 Toxin_3: Scorpion tox 97.0 0.00042 9.2E-09 38.6 1.6 34 41-74 13-49 (54)
7 PF07333 SLR1-BP: S locus-rela 95.5 0.013 2.9E-07 32.4 2.4 46 30-76 9-58 (58)
8 PF00451 Toxin_2: Scorpion sho 95.5 0.012 2.6E-07 29.5 1.9 30 42-73 2-32 (32)
9 PF07172 GRP: Glycine rich pro 95.1 0.024 5.1E-07 34.8 2.6 21 1-22 1-23 (95)
10 PF14866 Toxin_38: Potassium c 94.8 0.016 3.6E-07 32.5 1.3 29 44-75 27-55 (56)
11 PF08086 Toxin_17: Ergtoxin fa 94.4 0.044 9.6E-07 28.5 2.2 25 46-72 17-41 (41)
12 PF07127 Nodulin_late: Late no 93.6 0.08 1.7E-06 29.0 2.4 40 1-55 1-42 (54)
13 PF08119 Toxin_31: Scorpion ac 91.3 0.04 8.8E-07 27.8 -0.6 27 46-73 10-36 (37)
14 PF14865 Macin: Macin; PDB: 2K 85.0 0.54 1.2E-05 26.7 1.2 32 31-64 8-39 (59)
15 PF10690 Myticin-prepro: Mytic 84.5 0.51 1.1E-05 29.1 1.0 27 47-73 28-54 (98)
16 PF08027 Albumin_I: Albumin I; 78.8 0.67 1.5E-05 29.7 0.1 37 26-65 16-53 (120)
17 PF06876 SCRL: Plant self-inco 68.2 1.4 3.1E-05 24.7 -0.3 43 31-74 17-67 (67)
18 PF06607 Prokineticin: Prokine 62.8 3.3 7.2E-05 25.5 0.6 13 52-64 49-61 (97)
19 smart00004 NL Domain found in 60.3 4.7 0.0001 20.8 0.8 19 45-63 18-38 (38)
20 PF05294 Toxin_5: Scorpion sho 49.6 15 0.00031 18.3 1.5 20 47-72 13-32 (32)
21 PF11415 Toxin_37: Antifungal 47.7 10 0.00023 19.3 0.8 27 46-74 3-32 (35)
22 PF00066 Notch: LNR domain; I 42.9 3.9 8.5E-05 20.9 -1.2 19 45-63 17-37 (38)
23 COG4808 Uncharacterized protei 41.5 28 0.0006 23.1 2.3 18 1-18 1-18 (152)
24 PF09680 Tiny_TM_bacill: Prote 40.4 25 0.00054 16.4 1.4 7 8-14 6-12 (24)
25 TIGR01732 tiny_TM_bacill conse 32.9 46 0.00099 15.8 1.7 7 8-14 8-14 (26)
26 PRK09810 entericidin A; Provis 32.1 65 0.0014 16.8 2.4 15 5-19 3-17 (41)
27 PF05399 EVI2A: Ectropic viral 30.9 48 0.001 23.4 2.3 12 9-20 138-151 (227)
28 PRK00059 prsA peptidylprolyl i 29.9 54 0.0012 23.3 2.5 15 1-15 1-15 (336)
29 smart00747 CFEM CFEM domain. e 28.3 34 0.00074 18.8 1.0 28 47-74 6-33 (65)
30 PRK10081 entericidin B membran 28.0 83 0.0018 17.0 2.5 10 5-14 3-12 (48)
31 PF10960 DUF2762: Protein of u 27.5 49 0.0011 19.1 1.6 11 7-17 14-24 (71)
32 PLN03207 stomagen; Provisional 26.7 71 0.0015 20.1 2.3 10 47-56 82-91 (113)
33 COG4856 Uncharacterized protei 26.3 44 0.00095 25.5 1.6 16 5-20 11-26 (403)
34 PF07359 LEAP-2: Liver-express 25.9 23 0.00049 21.1 0.0 16 5-20 4-19 (77)
35 PRK12750 cpxP periplasmic repr 25.4 80 0.0017 21.0 2.6 18 1-18 1-18 (170)
36 PF03058 Sar8_2: Sar8.2 family 25.1 62 0.0014 19.9 1.8 8 1-8 1-8 (93)
37 PF10669 Phage_Gp23: Protein g 25.1 78 0.0017 19.9 2.3 6 16-21 31-36 (121)
38 PRK10449 heat-inducible protei 24.4 74 0.0016 20.2 2.2 15 5-19 2-16 (140)
39 PF02038 ATP1G1_PLM_MAT8: ATP1 24.2 60 0.0013 17.7 1.5 11 10-20 24-35 (50)
40 PF12869 tRNA_anti-like: tRNA_ 23.8 26 0.00057 21.7 0.0 13 1-13 1-13 (144)
41 PF07423 DUF1510: Protein of u 23.6 73 0.0016 22.2 2.2 7 13-19 25-31 (217)
42 PF09253 Ole-e-6: Pollen aller 22.8 17 0.00038 19.0 -0.8 17 47-63 3-19 (41)
43 PF12606 RELT: Tumour necrosis 22.6 97 0.0021 16.8 2.1 6 9-14 8-13 (50)
44 PF04668 Tsg: Twisted gastrula 22.0 39 0.00084 22.0 0.5 21 38-58 79-99 (132)
45 PF05927 Penaeidin: Penaeidin; 21.3 31 0.00068 20.2 -0.0 11 52-62 16-26 (73)
46 TIGR01165 cbiN cobalt transpor 21.2 1.2E+02 0.0026 18.5 2.5 8 1-8 1-8 (91)
47 PF01405 PsbT: Photosystem II 20.8 1.1E+02 0.0024 14.8 1.9 19 1-19 1-20 (29)
48 COG4929 Uncharacterized membra 20.4 1.1E+02 0.0023 21.2 2.4 21 1-21 2-22 (190)
49 COG4853 Uncharacterized protei 20.3 65 0.0014 23.2 1.4 15 5-19 7-22 (264)
50 KOG3136 Uncharacterized conser 20.1 68 0.0015 21.9 1.4 10 5-14 3-12 (196)
51 PF11770 GAPT: GRB2-binding ad 20.1 1.3E+02 0.0028 20.2 2.7 12 10-21 15-26 (158)
No 1
>PF00304 Gamma-thionin: Gamma-thionin family; InterPro: IPR008176 The following small plant proteins are evolutionary related: Gamma-thionins from Triticum aestivum (Wheat) endosperm (gamma-purothionins) and gamma-hordothionins from Hordeum vulgare(Barley) are toxic to animal cells and inhibit protein synthesis in cell free systems []. A flower-specific thionin (FST) from Nicotiana tabacum (Common Tobacco)[]. Antifungal proteins (AFP) from the seeds of Brassicaceae species such as radish, mustard, turnip and Arabidopsis thaliana (Thale Cress)[]. Inhibitors of insect alpha-amylases from sorghum []. Probable protease inhibitor P322 from Solanum tuberosum (Potato). A germination-related protein from Vigna unguiculata (Cowpea) []. Anther-specific protein SF18 from sunflower. SF18 is a protein that contains a gamma-thionin domain at its N terminus and a proline-rich C-terminal domain. Glycine max (Soybean) sulphur-rich protein SE60 []. Vicia faba (Broad bean) antibacterial peptides fabatin-1 and -2. In their mature form, these proteins generally consist of about 45 to 50 amino-acid residues. As shown in the following schematic representation, these peptides contain eight conserved cysteines involved in disulphide bonds. +-------------------------------------------+ | +-------------------+ | | | | | xxCxxxxxxxxxxCxxxxxCxxxCxxxxxxxxxCxxxxxxCxCxxxC | | | | +---|----------------+ | +------------------+ 'C': conserved cysteine involved in a disulphide bond. The folded structure of Gamma-purothionin is characterised by a well-defined 3-stranded anti-parallel beta-sheet and a short alpha-helix []. Three disulphide bridges are located in the hydrophobic core between the helix and sheet, forming a cysteine-stabilised alpha-helical motif. This structure differs from that of the plant alpha- and beta- thionins, but is analogous to scorpion toxins and insect defensins.; GO: 0006952 defense response; PDB: 4AB0_A 4AAZ_B 1N4N_A 2KPY_A 1JKZ_A 1AYJ_A 1GPT_A 1BK8_A 2GL1_A 1GPS_A ....
Probab=99.72 E-value=1.4e-18 Score=94.71 Aligned_cols=47 Identities=62% Similarity=1.258 Sum_probs=42.4
Q ss_pred ccccccCCceeecCCCccchhHHhhhcCCCceeecCCCCceEEecCC
Q 034999 30 RICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKRC 76 (76)
Q Consensus 30 ~~C~~~s~~~~G~C~~~~~C~~~C~~eg~~~G~C~~~~~~C~C~~~C 76 (76)
++|+++|++|+|+|+++++|+++|++|+|++|+|+++.++|+|++||
T Consensus 1 k~C~~~S~tf~G~C~~~~~C~~~C~~eg~~~G~C~~~~~~C~C~~~C 47 (47)
T PF00304_consen 1 KTCERPSGTFKGLCFSDSNCANVCINEGFTGGKCSGPLRRCFCTKPC 47 (47)
T ss_dssp EEEEEESSSS-SS-SSHHHHHHHHHHCTSSEEEEETTTTEEEEEEEE
T ss_pred CcccccCCCceeECCCcchhhHHhccCCCCCCEeCCCCceEEEeCcC
Confidence 57999999999999999999999999999999999767899999997
No 2
>smart00505 Knot1 Knottins. Knottins, representing plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins and arthropod defensins.
Probab=99.11 E-value=5.6e-11 Score=63.34 Aligned_cols=44 Identities=48% Similarity=1.066 Sum_probs=38.3
Q ss_pred cccccCCceeecCCCcc-chhHHhhhcCCCceeecCCCCceEEec
Q 034999 31 ICESQSHRFKGPCVSKS-NCAAVCQTEGFHGGHCRGFRRRCFCTK 74 (76)
Q Consensus 31 ~C~~~s~~~~G~C~~~~-~C~~~C~~eg~~~G~C~~~~~~C~C~~ 74 (76)
+|+.+|.+++|.|..+. +|+++|+++|+.+|+|..+.++|+|++
T Consensus 1 ~C~~~~~~~~g~C~~~~~~C~~~C~~~g~~~G~C~~~~~~C~C~~ 45 (45)
T smart00505 1 TCDGYSVTFSGNCKSSCALCAKLCKKKGAKGGYCRGTTRRCFCYK 45 (45)
T ss_pred CCcccccCCCCCccCCchHhHHHhhhcCCCCCCcCCcCCceEeeC
Confidence 46778888999999888 999999999999999987557899974
No 3
>cd00107 Knot1 The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments. Members include plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins.
Probab=98.88 E-value=1.5e-09 Score=54.82 Aligned_cols=33 Identities=39% Similarity=0.956 Sum_probs=29.2
Q ss_pred ecCCCccchhHHhhhcCCCceeecCCCCceEEe
Q 034999 41 GPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCT 73 (76)
Q Consensus 41 G~C~~~~~C~~~C~~eg~~~G~C~~~~~~C~C~ 73 (76)
|.|++++.|+++|+++|+.+|+|..+.++|+|+
T Consensus 1 g~C~~~~~C~~~Ck~~g~~~G~C~~~~~~C~C~ 33 (33)
T cd00107 1 GTCFSDSYCDKECKKKGASGGYCYGQGLACWCY 33 (33)
T ss_pred CcCCCchhHHHHHhHcCCCccEeCCCCCeEEeC
Confidence 578888999999999999999998765789995
No 4
>PF01097 Defensin_2: Arthropod defensin; InterPro: IPR001542 Arthropod defensins are a family of insect and scorpion cysteine-rich antibacterial peptides, primarily active against Gram-positive bacteria [, , , , ]. All these peptides range in length from 38 to 51 amino acids. There are six conserved cysteines all involved in intrachain disulphide bonds. A schematic representation of peptides from the arthropod defensin family is shown below. +----------------------------+ | | xxCxxxxxxxxxxxxxxCxxxCxxxxxxxxxCxxxxxCxCxx | | | | +---|---------------+ | +-----------------+ 'C': conserved cysteine involved in a disulphide bond. Although low level sequence similarities have been reported [] between the arthropod defensins and mammalian defensins, the topological arrangement of the disulphide bonds as well as the tertiary structure [] are completely different in the two families.; GO: 0006952 defense response; PDB: 1FJN_A 1ICA_A 1L4V_A 2LLD_A 3E7R_L 3E7U_X 1ZFU_A 2B68_A 2NZ3_A 2NY8_X ....
Probab=98.08 E-value=3e-06 Score=43.35 Aligned_cols=32 Identities=44% Similarity=0.983 Sum_probs=27.1
Q ss_pred ecCCCccchhHHhhhcCCCceeecCCCCceEEe
Q 034999 41 GPCVSKSNCAAVCQTEGFHGGHCRGFRRRCFCT 73 (76)
Q Consensus 41 G~C~~~~~C~~~C~~eg~~~G~C~~~~~~C~C~ 73 (76)
|.-+++..|+.||+..|+.+|+|++ ...|+|+
T Consensus 3 gc~~n~~~C~~hC~~~g~~GGyC~~-~~vC~Cr 34 (34)
T PF01097_consen 3 GCPVNHSACAAHCLSIGYRGGYCNG-KGVCVCR 34 (34)
T ss_dssp TTSSTCHHHHHHHHHHTCSEEEEET-TSCEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcceeCCC-CCEEEeC
Confidence 3445678999999999999999997 5789996
No 5
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=98.02 E-value=5.9e-06 Score=50.50 Aligned_cols=45 Identities=27% Similarity=0.790 Sum_probs=33.6
Q ss_pred eeecc-cccccCCceeecCCC-ccchhHHhhh--cCCCceeecCC-----CCceEEec
Q 034999 26 AAEAR-ICESQSHRFKGPCVS-KSNCAAVCQT--EGFHGGHCRGF-----RRRCFCTK 74 (76)
Q Consensus 26 ~~ea~-~C~~~s~~~~G~C~~-~~~C~~~C~~--eg~~~G~C~~~-----~~~C~C~~ 74 (76)
+++++ .|. .-.|.|.. +..|++.|++ .+|.+|+|... ...|+|.+
T Consensus 26 eV~G~~~cd----~~~G~C~~~~~~C~~~Ck~~~~~y~GG~C~~~~~~~~~~~C~Cc~ 79 (90)
T PF10868_consen 26 EVDGRLKCD----SPFGACTPFSSDCNEPCKKFGSNYYGGQCVPVGPPPGDGVCYCCY 79 (90)
T ss_pred eeCCeEccC----cccccCCchHHHHHHHHHhhccCCCCceeccCCCCCCCcEEEEec
Confidence 46665 454 33489988 5999999996 47999999852 26799875
No 6
>PF00537 Toxin_3: Scorpion toxin-like domain ; InterPro: IPR002061 Scorpion toxins, which may be mammal or insect specific, bind to sodium channels, inhibiting the inactivation of activated channels and blocking neuronal transmission. The complete covalent structure of the toxins has been deduced: it comprises around 66 amino acid residues and is cross- linked by 4 disulphide bridges [, ]. An anti-epilepsy peptide isolated from scorpion venom [] shows similarity to both scorpion neurotoxins and anti-insect toxins. This family also contains a group of proteinase inhibitors from Arabidopsis thaliana and Brassica spp., which belong to MEROPS inhibitor family I18, clan I-. The Brassica napus (Oil seed rape) and Sinapis alba (White mustard) inhibitors [, ], inhibit the catalytic activity of bovine beta-trypsin and bovine alpha-chymotrypsin, which belong to MEROPS peptidase family S1 (IPR001254 from INTERPRO) [].; GO: 0008200 ion channel inhibitor activity, 0005576 extracellular region; PDB: 2LI7_A 2LJM_A 2B3C_A 1B3C_A 1WWN_A 1JZA_B 1JZB_A 4AEI_A 1AHO_A 1PTX_A ....
Probab=96.99 E-value=0.00042 Score=38.56 Aligned_cols=34 Identities=24% Similarity=0.704 Sum_probs=27.7
Q ss_pred ecCCCccchhHHhhhcCCCceeecCCC---CceEEec
Q 034999 41 GPCVSKSNCAAVCQTEGFHGGHCRGFR---RRCFCTK 74 (76)
Q Consensus 41 G~C~~~~~C~~~C~~eg~~~G~C~~~~---~~C~C~~ 74 (76)
-.|+.+.-|++.|+.+|..+|+|..+. ..|+|..
T Consensus 13 ~~C~~n~~C~~~Ck~~ga~~GyC~~~~~~g~aCwC~~ 49 (54)
T PF00537_consen 13 YSCFPNEYCNKECKKKGAKSGYCYWWGPYGLACWCEG 49 (54)
T ss_dssp TBSSSHHHHHHHHHHTTSSEEEEECTETTEEEEEEEE
T ss_pred EECCCcchhhHHHHhcCCCccEeeCCCCCCCeEECCC
Confidence 367777899999999999999998652 4599974
No 7
>PF07333 SLR1-BP: S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP); InterPro: IPR010851 This entry consists of a number of cysteine rich SLR1 binding pollen coat like proteins. Adhesion of pollen grains to the stigmatic surface is a critical step during sexual reproduction in plants. In Brassica, S locus-related glycoprotein 1 (SLR1), a stigma-specific protein belonging to the S gene family of proteins, has been shown to be involved in this step. SLR1-BP specifically binds SLR1 with high affinity. The SLR1-BP gene is specifically expressed in pollen at late stages of development and is a member of the class A pollen coat protein (PCP) family, which includes PCP-A1, an SLG (S locus glycoprotein)-binding protein []. This entry also includes defensin-like proteins. The function of these proteins is uncharacterised.
Probab=95.54 E-value=0.013 Score=32.44 Aligned_cols=46 Identities=30% Similarity=0.780 Sum_probs=33.2
Q ss_pred ccccccCCceeecCCCccchhHHhhhcCCCc-eeecC-C--CCceEEecCC
Q 034999 30 RICESQSHRFKGPCVSKSNCAAVCQTEGFHG-GHCRG-F--RRRCFCTKRC 76 (76)
Q Consensus 30 ~~C~~~s~~~~G~C~~~~~C~~~C~~eg~~~-G~C~~-~--~~~C~C~~~C 76 (76)
+.|...-..-.+.|. ...|+..|..+...+ |.|.. . ...|.|+|+|
T Consensus 9 ~~C~~~l~~~~~~C~-~~~C~~~C~~k~~g~~G~C~~~~~~~~~C~C~Y~C 58 (58)
T PF07333_consen 9 RQCHEVLPNKPGPCD-PQDCRSLCKKKYKGGVGTCIPKPKGPKQCLCTYNC 58 (58)
T ss_pred CcCceeCccCCCCCC-hHHHHHHHHHHcCCCceEeccCCCCCCeeEEEeeC
Confidence 448754332246886 688999999875555 99986 1 3689999998
No 8
>PF00451 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IPR001947 Scorpion venoms contain a variety of peptides toxic to mammals, insects and crustaceans. Among these peptides there is a family of short toxins (30 to 40 residues) [, ] including charybdotoxin, kaliotoxin [], noxiustoxin [] and iberiotoxin [, ]. Charybdotoxin consists of a single polypeptide chain and is a potent, selective inhibitor of calcium-activated potassium channels in pituitary and aortic smooth muscle cells - the toxin reversibly blocks channel activity by interacting at the external pore of the channel protein[]. The tertiary structure of the toxins comprises a 3-stranded beta-sheet and a short helix, and is stabilised by a number of disulphide bridges [] as shown in the following schematic representation: +---------------------+ | | | | xxxxxxxCxxxxxCxxxCxxxxxxxxxxxCxxxxCxCxxx | | | | | +----------------+ | +----------------------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TSK_A 2PTA_A 1BIG_A 3ODV_A 2UVS_A 2KTX_A 1XSW_A 1KTX_A 1WMT_A 1PNH_A ....
Probab=95.50 E-value=0.012 Score=29.54 Aligned_cols=30 Identities=27% Similarity=0.826 Sum_probs=25.6
Q ss_pred cCCCccchhHHhhhc-CCCceeecCCCCceEEe
Q 034999 42 PCVSKSNCAAVCQTE-GFHGGHCRGFRRRCFCT 73 (76)
Q Consensus 42 ~C~~~~~C~~~C~~e-g~~~G~C~~~~~~C~C~ 73 (76)
.|..+.+|...|+.+ |...|.|-+ ++|.||
T Consensus 2 ~C~~s~~C~~~Ck~~~g~~~gKCmN--~kC~Cy 32 (32)
T PF00451_consen 2 KCTGSKDCWPPCKKATGCLNGKCMN--GKCKCY 32 (32)
T ss_dssp BTSSHHHHHHHHHHHTSSSEEEEET--TEEEEE
T ss_pred ccCCchHHHHHhhhhhCCCCCCccC--CCceeC
Confidence 466788899999987 999999984 689997
No 9
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=95.08 E-value=0.024 Score=34.84 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=11.7
Q ss_pred CCchhhHHH-HHHHH-HHHHHhhc
Q 034999 1 MERSVRLFS-TVLLV-LLLLASEM 22 (76)
Q Consensus 1 M~~~~k~~~-~~fll-lll~a~~~ 22 (76)
|+ |++++. ++||+ ||||+||+
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhh
Confidence 88 544433 33333 67777774
No 10
>PF14866 Toxin_38: Potassium channel toxin
Probab=94.77 E-value=0.016 Score=32.52 Aligned_cols=29 Identities=31% Similarity=0.776 Sum_probs=23.5
Q ss_pred CCccchhHHhhhcCCCceeecCCCCceEEecC
Q 034999 44 VSKSNCAAVCQTEGFHGGHCRGFRRRCFCTKR 75 (76)
Q Consensus 44 ~~~~~C~~~C~~eg~~~G~C~~~~~~C~C~~~ 75 (76)
+.+..|.+||+.++ ..|+|+++ +|.|..|
T Consensus 27 ~i~~~Ce~HC~~~~-~~G~C~~~--kCkC~~~ 55 (56)
T PF14866_consen 27 AIEGWCEDHCQAKK-KEGKCHGT--KCKCGKP 55 (56)
T ss_pred hHHhHHHHHHHhcC-cCCeecCc--ccccCCC
Confidence 35678999999955 78999986 7988765
No 11
>PF08086 Toxin_17: Ergtoxin family; InterPro: IPR012622 The Ergtoxin (ErgTx) family is a class of peptides from scorpion venom that specifically block ERG (ether-a-go-go-related gene) K+ channels of the nerve, heart and endocrine cells [, , ]. Peptides of the ErgTx family have from 42 to 47 amino acid residues cross-linked by four disulphide bridges. The four disulphide bridges have been assigned as C1-C4, C2-C6, C3-C7 and C5-C8 (see the schematic representation below) []. ErgTxs consist of a triple-stranded beta-sheet and an alpha-helix, as is typical of K+ channel scorpion toxins. There is a large hydrophobic patch on the surface of the toxin, surrounding a central lysine residue located near the beta-hairpin loop between the second and third strands of the beta-sheet. It has been postulated that this hydrophobic patch is likely to form part of the binding surface of the toxin []. Peptides of the ErgTx family possess a Knottin scaffold (see http://knottin.cbs.cnrs.fr). Some proteins known to belong to the ErgTx family are listed below: ErgTx1, ErgTx2 and ErgTx3 from Centruroides elegans (Bark scorpion). ErgTx1, ErgTx2, ErgTx3 and ErgTx4 from Centruroides exilicauda (Bark scorpion). ErgTx1, ErgTx2 and ErgTx3 from Centruroides gracilis (Slenderbrown scorpion) (Florida bark scorpion). ErgTx1, ErgTx2, ErgTx3 and ErgTx4 from Centruroides limpidus limpidus (Mexican scorpion). ErgTx1, ErgTx2, ErgTx3, ErgTx4, ErgTx5 and gamma-KTx 4.12 from Centruroides sculpturatus (Bark scorpion). ErgTx, ErgTx2, ErgTx3, ErgTx4 and ErgTx5 from Centruroides noxius (Mexican scorpion). ; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1NE5_A 1PX9_A.
Probab=94.37 E-value=0.044 Score=28.53 Aligned_cols=25 Identities=36% Similarity=1.038 Sum_probs=19.8
Q ss_pred ccchhHHhhhcCCCceeecCCCCceEE
Q 034999 46 KSNCAAVCQTEGFHGGHCRGFRRRCFC 72 (76)
Q Consensus 46 ~~~C~~~C~~eg~~~G~C~~~~~~C~C 72 (76)
...|..-|++.|..+|.|..| +|.|
T Consensus 17 y~qc~~cckkag~~~gtc~~f--kckc 41 (41)
T PF08086_consen 17 YGQCDDCCKKAGHRGGTCVYF--KCKC 41 (41)
T ss_dssp -HHHHHHHHHHTSS-EEEESS--SEEE
T ss_pred HHHHHHHHHHhCCCCceeEEE--EecC
Confidence 357999999999999999976 6766
No 12
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=93.58 E-value=0.08 Score=29.01 Aligned_cols=40 Identities=20% Similarity=0.594 Sum_probs=24.5
Q ss_pred CCchhhHHHHHHHH--HHHHHhhcCcceeecccccccCCceeecCCCccchhHHhhh
Q 034999 1 MERSVRLFSTVLLV--LLLLASEMGLRAAEARICESQSHRFKGPCVSKSNCAAVCQT 55 (76)
Q Consensus 1 M~~~~k~~~~~fll--lll~a~~~~~~~~ea~~C~~~s~~~~G~C~~~~~C~~~C~~ 55 (76)
|+...|++-++.++ |++++.+. + ....|..|.+|.+.|..
T Consensus 1 Ma~ilKFvY~mIiflslflv~~~~-----~----------~~~~C~~d~DCp~~c~~ 42 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLVVTNV-----D----------AIIPCKTDSDCPKDCPP 42 (54)
T ss_pred CccchhhHHHHHHHHHHHHhhccc-----C----------CCcccCccccCCCCCCC
Confidence 88877876543333 55555543 1 12477788888888553
No 13
>PF08119 Toxin_31: Scorpion acidic alpha-KTx toxin family; InterPro: IPR012635 This entry represents proteins that are acidic alpha-KTx short chain scorpion toxins. These toxins are named parabutoxins, that binds and inhibit voltage-sensitive potassium channels and inhibit the vertebrate potassium channel Kv1.1 with low affinity. Furthermore, they lack the crucial pore-plugging lysine. In addition, the second important residue of the dyad, the hydrophobic residue (Phe or Tyr) is also missing [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=91.30 E-value=0.04 Score=27.83 Aligned_cols=27 Identities=30% Similarity=0.872 Sum_probs=23.1
Q ss_pred ccchhHHhhhcCCCceeecCCCCceEEe
Q 034999 46 KSNCAAVCQTEGFHGGHCRGFRRRCFCT 73 (76)
Q Consensus 46 ~~~C~~~C~~eg~~~G~C~~~~~~C~C~ 73 (76)
|.-|..+|+.|.|.-|.|++- .+|.|.
T Consensus 10 demcviyckgeeystgvcdgp-qkckcs 36 (37)
T PF08119_consen 10 DEMCVIYCKGEEYSTGVCDGP-QKCKCS 36 (37)
T ss_pred CceEEEEecCceeccccccCC-cccccC
Confidence 677999999999999999984 678874
No 14
>PF14865 Macin: Macin; PDB: 2K35_A 2LN8_A.
Probab=84.98 E-value=0.54 Score=26.67 Aligned_cols=32 Identities=31% Similarity=0.651 Sum_probs=20.6
Q ss_pred cccccCCceeecCCCccchhHHhhhcCCCceeec
Q 034999 31 ICESQSHRFKGPCVSKSNCAAVCQTEGFHGGHCR 64 (76)
Q Consensus 31 ~C~~~s~~~~G~C~~~~~C~~~C~~eg~~~G~C~ 64 (76)
.|...+..+.|.= ..+|++.|+..|..+|.|.
T Consensus 8 RCs~~ss~~Tgil--W~sC~~~Ckc~G~~gG~C~ 39 (59)
T PF14865_consen 8 RCSRWSSWFTGIL--WKSCNDRCKCLGHDGGECV 39 (59)
T ss_dssp CCCHS-TTTTTTT--T-CCHHHHHTTT-SEEEEE
T ss_pred hcCcccccccccc--HhHhhHHHHHcCCCCCceE
Confidence 3544444444433 4789999998799999997
No 15
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=84.45 E-value=0.51 Score=29.12 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=18.9
Q ss_pred cchhHHhhhcCCCceeecCCCCceEEe
Q 034999 47 SNCAAVCQTEGFHGGHCRGFRRRCFCT 73 (76)
Q Consensus 47 ~~C~~~C~~eg~~~G~C~~~~~~C~C~ 73 (76)
.-|.+.|.+.+-+.--|..+.+.|+|+
T Consensus 28 ~yC~~fCgsa~C~~Y~c~~l~~gk~C~ 54 (98)
T PF10690_consen 28 YYCKKFCGSARCSLYGCYSLHPGKICK 54 (98)
T ss_dssp H-HHHHHHHTT-SEEEEEEETTEEEEE
T ss_pred hHHHHhcCCCCCcEEEEEEECCCeEEE
Confidence 449999998887777776665667765
No 16
>PF08027 Albumin_I: Albumin I; InterPro: IPR012512 The albumin I protein, a hormone-like peptide, stimulates kinase activity upon binding a membrane bound 43 kDa receptor. The structure of this region reveals a knottin like fold, comprise of three beta strands [].; GO: 0045735 nutrient reservoir activity, 0009405 pathogenesis; PDB: 1P8B_A 1JU8_A.
Probab=78.80 E-value=0.67 Score=29.68 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=15.7
Q ss_pred eeecccccccCCce-eecCCCccchhHHhhhcCCCceeecC
Q 034999 26 AAEARICESQSHRF-KGPCVSKSNCAAVCQTEGFHGGHCRG 65 (76)
Q Consensus 26 ~~ea~~C~~~s~~~-~G~C~~~~~C~~~C~~eg~~~G~C~~ 65 (76)
.+||..|...-..| .-+|. +++|. |+-.+...|.|..
T Consensus 16 KVEA~~C~g~Cs~Fe~ppCg-ss~Cr--CiP~~l~~G~C~~ 53 (120)
T PF08027_consen 16 KVEACDCSGVCSPFEMPPCG-SSDCR--CIPWGLFVGFCIY 53 (120)
T ss_dssp ------SECEE-TTSSSCCC--TTSE--EEE-SSS-EEEE-
T ss_pred eeeeeccCccccCCcCCCCC-CCCee--EEEeeecceEEEC
Confidence 36776666332233 22565 35666 7777888999973
No 17
>PF06876 SCRL: Plant self-incompatibility response (SCRL) protein; InterPro: IPR010682 This family consists of several plant self-incompatibility response (SCRL) proteins. The male component of the self-incompatibility response in Brassica has been shown to be encoded by the S locus cysteine-rich gene (SCR). SCR is related, at the sequence level, to the pollen coat protein (PCP) gene family whose members encode small, cysteine-rich proteins located in the proteo-lipidic surface layer (tryphine) of Brassica pollen grains [].; GO: 0007165 signal transduction; PDB: 1UGL_A.
Probab=68.22 E-value=1.4 Score=24.69 Aligned_cols=43 Identities=21% Similarity=0.488 Sum_probs=16.8
Q ss_pred cccccCCceeecCCCcc--chhHHhhh---cCCCceeecC-C-C-CceEEec
Q 034999 31 ICESQSHRFKGPCVSKS--NCAAVCQT---EGFHGGHCRG-F-R-RRCFCTK 74 (76)
Q Consensus 31 ~C~~~s~~~~G~C~~~~--~C~~~C~~---eg~~~G~C~~-~-~-~~C~C~~ 74 (76)
.| ....+|.|.|.++. .|.+.-.+ .....=.|.. . . +.|.|++
T Consensus 17 ~C-~~~~~f~G~Cg~~G~~~C~~~~~~~~~~~p~~C~C~~~~~~~r~C~C~~ 67 (67)
T PF06876_consen 17 RC-PDKFNFPGKCGNSGNKTCEKDYKKGKKKKPSNCTCTDSPKNGRLCDCKC 67 (67)
T ss_dssp ---SSSS-EESSS-HHHHHHHHHH---------SS---B--SSSEEB--SS-
T ss_pred CC-CCCceEcCcCCCCchhHHHHHhhhcccccCCcCEecCCCCCCEEeeCcC
Confidence 49 46678999999654 48777775 1334555552 2 2 3487763
No 18
>PF06607 Prokineticin: Prokineticin; InterPro: IPR023569 The prokineticin family includes prokinectin itself and related proteins such as BM8 and the AVIToxins. The suprachiasmatic nucleus (SCN) controls the circadian rhythm of physiological and behavioural processes in mammals. It has been shown that prokineticin 2 (PK2), a cysteine-rich secreted protein, functions as an output molecule from the SCN circadian clock. PK2 messenger RNA is rhythmically expressed in the SCN, and the phase of PK2 rhythm is responsive to light entrainment. Molecular and genetic studies have revealed that PK2 is a gene that is controlled by a circadian clock []. The prokinectin domain is found in the prokinectin family and the hainantoxins, where it comprises the whole length of the protein. This domain is also found at the C terminus of some members of the Dickkopf family.; PDB: 1IMT_A 2KRA_A.
Probab=62.83 E-value=3.3 Score=25.52 Aligned_cols=13 Identities=38% Similarity=0.894 Sum_probs=4.5
Q ss_pred HhhhcCCCceeec
Q 034999 52 VCQTEGFHGGHCR 64 (76)
Q Consensus 52 ~C~~eg~~~G~C~ 64 (76)
.|+--|..|-.|+
T Consensus 49 vCkPlG~~Ge~Ch 61 (97)
T PF06607_consen 49 VCKPLGQEGEPCH 61 (97)
T ss_dssp CCEE-B-TT-EE-
T ss_pred ceeCCCcCcCccc
Confidence 3554444555554
No 19
>smart00004 NL Domain found in Notch and Lin-12. The Notch protein is essential for the proper differentiation of the Drosophila ectoderm. This protein contains 3 NL domains.
Probab=60.33 E-value=4.7 Score=20.81 Aligned_cols=19 Identities=26% Similarity=0.803 Sum_probs=13.9
Q ss_pred CccchhHHhhhc--CCCceee
Q 034999 45 SKSNCAAVCQTE--GFHGGHC 63 (76)
Q Consensus 45 ~~~~C~~~C~~e--g~~~G~C 63 (76)
.|..|++.|.++ +|.+|.|
T Consensus 18 ~dg~CD~~CN~~~C~~DG~DC 38 (38)
T smart00004 18 GDGVCDEECNNAECLWDGGDC 38 (38)
T ss_pred CCCccchhhCcccCCCCCCCC
Confidence 467788888874 6777765
No 20
>PF05294 Toxin_5: Scorpion short toxin; InterPro: IPR007958 This family contains various secreted scorpion short toxins which seem to be unrelated to those described in IPR001947 from INTERPRO.; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1SIS_A 1CHL_A.
Probab=49.58 E-value=15 Score=18.35 Aligned_cols=20 Identities=35% Similarity=1.149 Sum_probs=13.0
Q ss_pred cchhHHhhhcCCCceeecCCCCceEE
Q 034999 47 SNCAAVCQTEGFHGGHCRGFRRRCFC 72 (76)
Q Consensus 47 ~~C~~~C~~eg~~~G~C~~~~~~C~C 72 (76)
.+|++-|.+. |.|.+ ..|.|
T Consensus 13 ~kC~~CCgg~----GkC~G--pqClC 32 (32)
T PF05294_consen 13 KKCRDCCGGR----GKCFG--PQCLC 32 (32)
T ss_dssp HHHHHHCTTS----EEEET--TEEEE
T ss_pred HHHHHHhCCC----CeEcC--CcccC
Confidence 3566666543 89976 46776
No 21
>PF11415 Toxin_37: Antifungal peptide termicin; InterPro: IPR024723 Termicin is a cysteine-rich antifungal peptide, which also exhibits weak antibacterial activity. The global fold of termicin consists of an alpha-helical segment and a two-stranded antiparallel beta-sheet forming a cysteine stabilised alphabeta motif that is also found in antibacterial and antifungal defensins from insects and from plants. The antifungal properties of termicin may be related to its marked hydrophobicity and its amphipatic structure compared to the antibacterial defensins [].; PDB: 1MM0_A.
Probab=47.70 E-value=10 Score=19.26 Aligned_cols=27 Identities=37% Similarity=0.765 Sum_probs=21.1
Q ss_pred ccchhHHhhhc---CCCceeecCCCCceEEec
Q 034999 46 KSNCAAVCQTE---GFHGGHCRGFRRRCFCTK 74 (76)
Q Consensus 46 ~~~C~~~C~~e---g~~~G~C~~~~~~C~C~~ 74 (76)
...|...|+.+ .|..-+|++ ..|.|.+
T Consensus 3 ~~~CWa~CqaqhgiyFRRAyCdG--s~C~Cvf 32 (35)
T PF11415_consen 3 FQSCWANCQAQHGIYFRRAYCDG--SRCKCVF 32 (35)
T ss_dssp HHHHHHHHHHHS-TTEEEEEEET--TEEEEEE
T ss_pred HHHHHHHHHHhhcchhhhhhccC--CeeEEEe
Confidence 35789999965 568899996 5799875
No 22
>PF00066 Notch: LNR domain; InterPro: IPR000800 The Notch domain is also called the 'DSL' domain or the Lin-12/Notch repeat (LNR). The LNR region is present only in Notch related proteins C-terminal to EGF repeats. The lin-12/Notch proteins act as transmembrane receptors for intercellular signals that specify cell fates during animal development. In response to a ligand, proteolytic cleavages release the intracellular domain of Notch, which then gains access to the nucleus and acts as a transcriptional co-activator []. The LNR region is supposed to negatively regulate the Lin-12/Notch proteins activity. It is a triplication of an around 35-40 amino acids module present on the extracellular part of the protein [, ]. Each module contains six cysteine residues engaged in three disulphide bonds and three conserved aspartate and asparagine residues []. The biochemical characterisation of a recombinantly expressed LIN-12.1 module from the human Notch1 receptor indicate that the disulphide bonds are formed between the first and fifth, second and fourth, and third and sixth cysteines. The formation of this particular disulphide isomer is favored by the presence of Ca2+, which is also required to maintain the structural integrity of the rLIN-12.1 module. The conserved aspartate and asparagine residues are likely to be important for Ca2+ binding, and thereby contribute to the native fold.; GO: 0030154 cell differentiation, 0016020 membrane; PDB: 3ETO_A 3I08_A 1PB5_A 3L95_X 2OO4_A.
Probab=42.85 E-value=3.9 Score=20.90 Aligned_cols=19 Identities=37% Similarity=1.057 Sum_probs=10.1
Q ss_pred CccchhHHhhhc--CCCceee
Q 034999 45 SKSNCAAVCQTE--GFHGGHC 63 (76)
Q Consensus 45 ~~~~C~~~C~~e--g~~~G~C 63 (76)
.+..|+..|.++ +|.+|-|
T Consensus 17 gng~CD~~Cn~~~C~~DGgDC 37 (38)
T PF00066_consen 17 GNGVCDPECNNPECGFDGGDC 37 (38)
T ss_dssp TSSS--GGG-SCCCGHHHGTT
T ss_pred CCCccChhhCccccCCCCCcC
Confidence 466777777764 5566655
No 23
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.45 E-value=28 Score=23.09 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=13.1
Q ss_pred CCchhhHHHHHHHHHHHH
Q 034999 1 MERSVRLFSTVLLVLLLL 18 (76)
Q Consensus 1 M~~~~k~~~~~flllll~ 18 (76)
|...+++++++|+++|.+
T Consensus 1 Mk~l~kl~~~~~alil~~ 18 (152)
T COG4808 1 MKALNKLFSLVVALVLVF 18 (152)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 667788888888885443
No 24
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=40.39 E-value=25 Score=16.43 Aligned_cols=7 Identities=14% Similarity=0.728 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 034999 8 FSTVLLV 14 (76)
Q Consensus 8 ~~~~fll 14 (76)
|+++.+|
T Consensus 6 FalivVL 12 (24)
T PF09680_consen 6 FALIVVL 12 (24)
T ss_pred chhHHHH
Confidence 4444444
No 25
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=32.91 E-value=46 Score=15.82 Aligned_cols=7 Identities=14% Similarity=0.728 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 034999 8 FSTVLLV 14 (76)
Q Consensus 8 ~~~~fll 14 (76)
|+++.+|
T Consensus 8 f~livVL 14 (26)
T TIGR01732 8 FALIVVL 14 (26)
T ss_pred hHHHHHH
Confidence 3344444
No 26
>PRK09810 entericidin A; Provisional
Probab=32.09 E-value=65 Score=16.83 Aligned_cols=15 Identities=47% Similarity=0.499 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHHH
Q 034999 5 VRLFSTVLLVLLLLA 19 (76)
Q Consensus 5 ~k~~~~~flllll~a 19 (76)
+|+++++++++++++
T Consensus 3 kk~~~l~~~~~~~L~ 17 (41)
T PRK09810 3 KRLIVLVLLASTLLT 17 (41)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444444433333343
No 27
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=30.94 E-value=48 Score=23.45 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=6.2
Q ss_pred HHHHHH--HHHHHh
Q 034999 9 STVLLV--LLLLAS 20 (76)
Q Consensus 9 ~~~fll--lll~a~ 20 (76)
++|||+ +||+++
T Consensus 138 AVLfLICT~LfLST 151 (227)
T PF05399_consen 138 AVLFLICTLLFLST 151 (227)
T ss_pred HHHHHHHHHHHHHH
Confidence 455554 455554
No 28
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=29.93 E-value=54 Score=23.30 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=9.9
Q ss_pred CCchhhHHHHHHHHH
Q 034999 1 MERSVRLFSTVLLVL 15 (76)
Q Consensus 1 M~~~~k~~~~~flll 15 (76)
|...+|+++++++++
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (336)
T PRK00059 1 MKSIKKLVASLLVGV 15 (336)
T ss_pred CchHHHHHHHHHHHH
Confidence 777778776655543
No 29
>smart00747 CFEM CFEM domain. eight cysteine-containing domain present in fungal extracellular membrane proteins
Probab=28.32 E-value=34 Score=18.80 Aligned_cols=28 Identities=21% Similarity=0.618 Sum_probs=19.2
Q ss_pred cchhHHhhhcCCCceeecCCCCceEEec
Q 034999 47 SNCAAVCQTEGFHGGHCRGFRRRCFCTK 74 (76)
Q Consensus 47 ~~C~~~C~~eg~~~G~C~~~~~~C~C~~ 74 (76)
+.|...|..+......|......|+|..
T Consensus 6 P~Ca~~C~~~~~~~~~C~~~D~~ClC~~ 33 (65)
T smart00747 6 PSCALPCVNQALGSFPCSLTDAKCLCVN 33 (65)
T ss_pred chhHHHHHHhccccCCCCCCCCcCcCCC
Confidence 5688889877655556864345788854
No 30
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=28.00 E-value=83 Score=17.03 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=4.7
Q ss_pred hhHHHHHHHH
Q 034999 5 VRLFSTVLLV 14 (76)
Q Consensus 5 ~k~~~~~fll 14 (76)
+|++++++++
T Consensus 3 Kk~i~~i~~~ 12 (48)
T PRK10081 3 KKTIAAIFSV 12 (48)
T ss_pred HHHHHHHHHH
Confidence 4555544433
No 31
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=27.54 E-value=49 Score=19.15 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=6.3
Q ss_pred HHHHHHHHHHH
Q 034999 7 LFSTVLLVLLL 17 (76)
Q Consensus 7 ~~~~~flllll 17 (76)
+++++|+.||+
T Consensus 14 ~fA~LFv~Ll~ 24 (71)
T PF10960_consen 14 IFAVLFVWLLF 24 (71)
T ss_pred cHHHHHHHHHH
Confidence 45667766443
No 32
>PLN03207 stomagen; Provisional
Probab=26.69 E-value=71 Score=20.07 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=6.6
Q ss_pred cchhHHhhhc
Q 034999 47 SNCAAVCQTE 56 (76)
Q Consensus 47 ~~C~~~C~~e 56 (76)
..|.-.|+.|
T Consensus 82 rgcr~kc~~e 91 (113)
T PLN03207 82 RGCRYKCRAE 91 (113)
T ss_pred cCccccccce
Confidence 3577777754
No 33
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.28 E-value=44 Score=25.55 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHh
Q 034999 5 VRLFSTVLLVLLLLAS 20 (76)
Q Consensus 5 ~k~~~~~flllll~a~ 20 (76)
.+++++||.++||++.
T Consensus 11 irIiaff~A~~Lfl~v 26 (403)
T COG4856 11 IRIIAFFFAILLFLYV 26 (403)
T ss_pred HHHHHHHHHHHhheee
Confidence 4555666666666643
No 34
>PF07359 LEAP-2: Liver-expressed antimicrobial peptide 2 precursor (LEAP-2); InterPro: IPR009955 This family consists of several mammalian liver-expressed antimicrobial peptide 2 (LEAP-2) sequences. LEAP-2 is a cysteine-rich, and cationic protein. LEAP-2 contains a core structure with two disulphide bonds formed by cysteine residues in relative 1-3 and 2-4 positions. LEAP-2 is synthesised as a 77-residue precursor, which is predominantly expressed in the liver and highly conserved among mammals. The largest native LEAP-2 form of 40 amino acid residues is generated from the precursor at a putative cleavage site for a furin-like endoprotease. In contrast to smaller LEAP-2 variants, this peptide exhibits dose-dependent antimicrobial activity against selected microbial model organisms []. The exact function of this family is unclear.; GO: 0042742 defense response to bacterium; PDB: 2L1Q_A.
Probab=25.88 E-value=23 Score=21.06 Aligned_cols=16 Identities=44% Similarity=0.858 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHh
Q 034999 5 VRLFSTVLLVLLLLAS 20 (76)
Q Consensus 5 ~k~~~~~flllll~a~ 20 (76)
.|+++++++++||+..
T Consensus 4 lkl~A~lli~lLL~~Q 19 (77)
T PF07359_consen 4 LKLFAVLLICLLLLQQ 19 (77)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677666655555543
No 35
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=25.39 E-value=80 Score=21.00 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=11.3
Q ss_pred CCchhhHHHHHHHHHHHH
Q 034999 1 MERSVRLFSTVLLVLLLL 18 (76)
Q Consensus 1 M~~~~k~~~~~flllll~ 18 (76)
|.+.+|++.+.+++.|.+
T Consensus 1 ~~~~kkl~~~~v~~~l~l 18 (170)
T PRK12750 1 MKLAKKLVLAAVVLPLTL 18 (170)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 777888876655553443
No 36
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=25.14 E-value=62 Score=19.86 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=3.8
Q ss_pred CCchhhHH
Q 034999 1 MERSVRLF 8 (76)
Q Consensus 1 M~~~~k~~ 8 (76)
|+....+|
T Consensus 1 M~~Ktnlf 8 (93)
T PF03058_consen 1 MVSKTNLF 8 (93)
T ss_pred CcchhhhH
Confidence 55444444
No 37
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=25.06 E-value=78 Score=19.91 Aligned_cols=6 Identities=17% Similarity=0.584 Sum_probs=2.3
Q ss_pred HHHHhh
Q 034999 16 LLLASE 21 (76)
Q Consensus 16 ll~a~~ 21 (76)
|++...
T Consensus 31 LIi~~~ 36 (121)
T PF10669_consen 31 LIITKS 36 (121)
T ss_pred HHHHHH
Confidence 334433
No 38
>PRK10449 heat-inducible protein; Provisional
Probab=24.38 E-value=74 Score=20.23 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHH
Q 034999 5 VRLFSTVLLVLLLLA 19 (76)
Q Consensus 5 ~k~~~~~flllll~a 19 (76)
+|+++++++.++|++
T Consensus 2 k~~~~~~~~~~~l~~ 16 (140)
T PRK10449 2 KKVVALVALSLLMAG 16 (140)
T ss_pred hhHHHHHHHHHHHHH
Confidence 466655555555554
No 39
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=24.18 E-value=60 Score=17.74 Aligned_cols=11 Identities=18% Similarity=0.661 Sum_probs=5.2
Q ss_pred HHHHH-HHHHHh
Q 034999 10 TVLLV-LLLLAS 20 (76)
Q Consensus 10 ~~fll-lll~a~ 20 (76)
++|++ ++++.|
T Consensus 24 vlfi~Gi~iils 35 (50)
T PF02038_consen 24 VLFILGILIILS 35 (50)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHHHc
Confidence 44555 444444
No 40
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=23.76 E-value=26 Score=21.69 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCchhhHHHHHHH
Q 034999 1 MERSVRLFSTVLL 13 (76)
Q Consensus 1 M~~~~k~~~~~fl 13 (76)
|...+|++.++++
T Consensus 1 M~~~kk~l~~~l~ 13 (144)
T PF12869_consen 1 MKILKKILIIILI 13 (144)
T ss_dssp -------------
T ss_pred CchhhhHHHHHHH
Confidence 5545666544333
No 41
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=23.62 E-value=73 Score=22.25 Aligned_cols=7 Identities=29% Similarity=0.876 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 034999 13 LVLLLLA 19 (76)
Q Consensus 13 lllll~a 19 (76)
||+++++
T Consensus 25 lLIiiva 31 (217)
T PF07423_consen 25 LLIIIVA 31 (217)
T ss_pred HHHHHHh
Confidence 3333333
No 42
>PF09253 Ole-e-6: Pollen allergen ole e 6; InterPro: IPR015333 This entry represents pollen allergens, such as ole-e-6, a small acidic protein from Olea europaea (Common olive) which mediates olive allergy. Members of this family have an alpha-helical hairpin structure cross-linked by three disulphides, followed by a long, unstructured C-terminal tail [].; PDB: 1SS3_A.
Probab=22.85 E-value=17 Score=19.03 Aligned_cols=17 Identities=35% Similarity=0.792 Sum_probs=11.1
Q ss_pred cchhHHhhhcCCCceee
Q 034999 47 SNCAAVCQTEGFHGGHC 63 (76)
Q Consensus 47 ~~C~~~C~~eg~~~G~C 63 (76)
++|.+.|+.+|...-+|
T Consensus 3 n~C~keC~~~g~G~tfC 19 (41)
T PF09253_consen 3 NNCEKECKSEGNGYTFC 19 (41)
T ss_dssp HHHHHHHHTTT--HHHH
T ss_pred chHHHHHhccCCCeeeE
Confidence 56888898887655555
No 43
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=22.60 E-value=97 Score=16.78 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=2.7
Q ss_pred HHHHHH
Q 034999 9 STVLLV 14 (76)
Q Consensus 9 ~~~fll 14 (76)
+++|++
T Consensus 8 ~i~iv~ 13 (50)
T PF12606_consen 8 SIFIVM 13 (50)
T ss_pred HHHHHH
Confidence 444444
No 44
>PF04668 Tsg: Twisted gastrulation (Tsg) protein conserved region; InterPro: IPR006761 Tsg was identified in Drosophila melanogaster as being required to specify the dorsal-most structures in the embryo, for example the amnioserosa. Biochemical experiments have revealed three key properties of Tsg: it can synergistically inhibit Dpp/BMP action in both D. melanogaster and vertebrates by forming a tripartite complete between itself, SOG/chordin and a BMP ligand; Tsg seems to enhance the Tld/BMP-1-mediated cleavage rate of SOG/chordin and may change the preference of site utilisation; Tsg can promote the dissociation of chordin cysteine-rich-containing fragments from the ligand to inhibit BMP signalling [, ].
Probab=22.01 E-value=39 Score=22.00 Aligned_cols=21 Identities=24% Similarity=0.634 Sum_probs=17.3
Q ss_pred ceeecCCCccchhHHhhhcCC
Q 034999 38 RFKGPCVSKSNCAAVCQTEGF 58 (76)
Q Consensus 38 ~~~G~C~~~~~C~~~C~~eg~ 58 (76)
-|...|.+.++|+..|.+=|+
T Consensus 79 vY~~~C~S~nkCr~sCeSmGA 99 (132)
T PF04668_consen 79 VYFDQCMSWNKCRQSCESMGA 99 (132)
T ss_pred EEhhhhcCHHHHHHHHHhcCc
Confidence 456789999999999998664
No 45
>PF05927 Penaeidin: Penaeidin; InterPro: IPR009226 This family consists of several isoforms of the penaeidin protein, which is specific to shrimps. Penaeidins, a unique family of antimicrobial peptides (AMPs) with both proline and cysteine-rich domains, were initially identified in the hemolymph of the Pacific white shrimp, Penaeus vannamei [].; GO: 0008061 chitin binding, 0005737 cytoplasm; PDB: 1UEO_A 1XV3_A.
Probab=21.28 E-value=31 Score=20.15 Aligned_cols=11 Identities=55% Similarity=1.256 Sum_probs=1.0
Q ss_pred HhhhcCCCcee
Q 034999 52 VCQTEGFHGGH 62 (76)
Q Consensus 52 ~C~~eg~~~G~ 62 (76)
+|+.+||.+|+
T Consensus 16 VCQG~gykggy 26 (73)
T PF05927_consen 16 VCQGQGYKGGY 26 (73)
T ss_dssp --------S-S
T ss_pred hccCccccCCc
Confidence 34445555554
No 46
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=21.17 E-value=1.2e+02 Score=18.53 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=4.4
Q ss_pred CCchhhHH
Q 034999 1 MERSVRLF 8 (76)
Q Consensus 1 M~~~~k~~ 8 (76)
|.+.++++
T Consensus 1 m~~~~~~~ 8 (91)
T TIGR01165 1 MSMKKTIW 8 (91)
T ss_pred CCcchhHH
Confidence 56555553
No 47
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=20.78 E-value=1.1e+02 Score=14.83 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=6.8
Q ss_pred CCchhhHHHHHHHH-HHHHH
Q 034999 1 MERSVRLFSTVLLV-LLLLA 19 (76)
Q Consensus 1 M~~~~k~~~~~fll-lll~a 19 (76)
|+....++.++..| +|+.|
T Consensus 1 MEa~vY~~ll~~tlgilffA 20 (29)
T PF01405_consen 1 MEALVYTFLLIGTLGILFFA 20 (29)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhh
Confidence 44333333333333 34433
No 48
>COG4929 Uncharacterized membrane-anchored protein [Function unknown]
Probab=20.36 E-value=1.1e+02 Score=21.19 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=12.0
Q ss_pred CCchhhHHHHHHHHHHHHHhh
Q 034999 1 MERSVRLFSTVLLVLLLLASE 21 (76)
Q Consensus 1 M~~~~k~~~~~flllll~a~~ 21 (76)
|...+|.+.+..+++||+.++
T Consensus 2 ~~~~kk~l~~~~il~lll~Tg 22 (190)
T COG4929 2 MMNNKKWLYIRAILPLLLQTG 22 (190)
T ss_pred ccccchHHHHHHHHHHHHHhC
Confidence 445667776666554554443
No 49
>COG4853 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.30 E-value=65 Score=23.24 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=8.0
Q ss_pred hhHHHHHHHHH-HHHH
Q 034999 5 VRLFSTVLLVL-LLLA 19 (76)
Q Consensus 5 ~k~~~~~flll-ll~a 19 (76)
+.+|.++||+| +|++
T Consensus 7 KsIFIv~fLllnifL~ 22 (264)
T COG4853 7 KSIFIVVFLLLNIFLV 22 (264)
T ss_pred ceeehhHHHHHHHHHH
Confidence 34456666664 4444
No 50
>KOG3136 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.11 E-value=68 Score=21.91 Aligned_cols=10 Identities=40% Similarity=0.361 Sum_probs=4.8
Q ss_pred hhHHHHHHHH
Q 034999 5 VRLFSTVLLV 14 (76)
Q Consensus 5 ~k~~~~~fll 14 (76)
++.++++|+.
T Consensus 3 kr~v~~l~~v 12 (196)
T KOG3136|consen 3 KRGVSLLFLV 12 (196)
T ss_pred ceehhHHHHH
Confidence 3445555544
No 51
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=20.06 E-value=1.3e+02 Score=20.16 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhh
Q 034999 10 TVLLVLLLLASE 21 (76)
Q Consensus 10 ~~flllll~a~~ 21 (76)
-++||||||.-+
T Consensus 15 gi~Ll~lLl~cg 26 (158)
T PF11770_consen 15 GISLLLLLLLCG 26 (158)
T ss_pred HHHHHHHHHHHh
Confidence 344444444433
Done!