BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035000
(76 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P61166|TM258_MOUSE Transmembrane protein 258 OS=Mus musculus GN=Tmem258 PE=2 SV=1
Length = 79
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
TSPV A +P L+V +LAIG+F TA FF+YE TS++ R + KEL+ VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVL 69
Query: 67 FLLLASGVYV 76
FLLL G+YV
Sbjct: 70 FLLLWVGIYV 79
>sp|P61165|TM258_HUMAN Transmembrane protein 258 OS=Homo sapiens GN=TMEM258 PE=1 SV=1
Length = 79
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
TSPV A +P L+V +LAIG+F TA FF+YE TS++ R + KEL+ VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVL 69
Query: 67 FLLLASGVYV 76
FLLL G+YV
Sbjct: 70 FLLLWVGIYV 79
>sp|Q76LT9|TM258_CHICK Transmembrane protein 258 OS=Gallus gallus GN=TMEM258 PE=3 SV=1
Length = 79
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
TSPV A +P L+V +LAIG+F TA FF+YE TS++ R + KEL+ VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVL 69
Query: 67 FLLLASGVYV 76
FLLL G+YV
Sbjct: 70 FLLLWVGIYV 79
>sp|Q6DDB3|TM258_XENTR Transmembrane protein 258 OS=Xenopus tropicalis GN=tmem258 PE=3
SV=1
Length = 79
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
TSPV A +P L+V +LAIG+F TA FF+YE TS++ R + KEL+ VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDVYKELLISLVASLFMGFGVL 69
Query: 67 FLLLASGVYV 76
FLLL G+YV
Sbjct: 70 FLLLWVGIYV 79
>sp|Q6GP81|TM258_XENLA Transmembrane protein 258 OS=Xenopus laevis GN=tmem258 PE=3 SV=1
Length = 79
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 52/70 (74%)
Query: 7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
TSPV A +P L+V +LAIG+F TA FF+YE TS++ R + KEL+ VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDVYKELLISLVASLFMGFGVL 69
Query: 67 FLLLASGVYV 76
FLLL G+YV
Sbjct: 70 FLLLWVGIYV 79
>sp|Q32P84|TM258_BOVIN Transmembrane protein 258 OS=Bos taurus GN=TMEM258 PE=3 SV=1
Length = 79
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
TSPV A +P L+V +LAIG+F TA FF+YE TS++ R + KEL+ VAS+F+GFG L
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVL 69
Query: 67 FLLLASGVYV 76
FLLL G+Y+
Sbjct: 70 FLLLWVGIYI 79
>sp|Q6PBS6|TM258_DANRE Transmembrane protein 258 OS=Danio rerio GN=tmem258 PE=3 SV=1
Length = 79
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
TSPV A +P L+V +LAIG+F A FF+YE TS++ R + KEL+ VAS+F+GFG
Sbjct: 10 TSPVNPAVFPHLTVVLLAIGMFFKAWFFVYEVTSTKYTRDVYKELLIALVASLFMGFGVH 69
Query: 67 FLLLASGVYV 76
FLLL G++V
Sbjct: 70 FLLLWVGIFV 79
>sp|Q965T1|TM258_CAEEL Transmembrane protein 258 homolog OS=Caenorhabditis elegans
GN=Y57E12AM.1 PE=3 SV=1
Length = 79
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 49/70 (70%)
Query: 7 TSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSL 66
T+PV A P L+ F+ +GL + A+F + + TS++ NR+L KEL A +SVFLGFGS+
Sbjct: 10 TAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATSSVFLGFGSV 69
Query: 67 FLLLASGVYV 76
FLLL G+YV
Sbjct: 70 FLLLWVGIYV 79
>sp|Q9VVA8|TM258_DROME Transmembrane protein 258 homolog OS=Drosophila melanogaster
GN=CG9669 PE=1 SV=1
Length = 78
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 8 SPVPDAWYPTLSVFMLAIGLFVTASFFIYEAT-SSRQNRSLGKELITGAVASVFLGFGSL 66
SPV A +P L+ +L IG F TA FFI+ + S + +L KEL+ AS+FLGFG +
Sbjct: 9 SPVNPAVFPHLATVLLVIGTFFTAWFFIFVVSRKSSKESTLIKELLISLCASIFLGFGIV 68
Query: 67 FLLLASGVYV 76
FLLL G+YV
Sbjct: 69 FLLLTVGIYV 78
>sp|Q60WL8|TM258_CAEBR Transmembrane protein 258 homolog OS=Caenorhabditis briggsae
GN=CBG19073 PE=3 SV=1
Length = 79
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%)
Query: 8 SPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLF 67
+PV + P L+ + +GL + A+F + + TS++ NR++ KEL A +S+FLGFGS+F
Sbjct: 11 APVHFSSLPLLATVLCGVGLLLLAAFTMLQVTSTKYNRNVFKELFIAATSSIFLGFGSVF 70
Query: 68 LLLASGVYV 76
LLL G+YV
Sbjct: 71 LLLWVGIYV 79
>sp|Q54J38|TM258_DICDI Transmembrane protein 258 homolog OS=Dictyostelium discoideum
GN=DDB_G0288325 PE=3 SV=1
Length = 76
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 1 MAPKPITSPVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSRQNRSLGKELITGAVASVF 60
MA P TSP+ +YP + IG A+F + E T+++ +++ +EL +AS+
Sbjct: 1 MALVPYTSPLDIVFYPVCAFLFCVIGFAFFATFIVSEMTTAKAQKNIFRELTLALIASMS 60
Query: 61 LGFGSLFLLLASGVYV 76
LG G F+LLA G+YV
Sbjct: 61 LGLGLFFVLLAGGIYV 76
>sp|P31423|GRM4_RAT Metabotropic glutamate receptor 4 OS=Rattus norvegicus GN=Grm4 PE=1
SV=1
Length = 912
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 3 PKPITSPVPDAWYPTLSVFMLAIG----LFVTASFFIYEATSSRQNRSLGKELITGAVAS 58
P PI D+ + L +F+ +G LFV +F Y T ++ G+EL +A
Sbjct: 575 PIPIVKLEWDSPWAVLPLFLAVVGIAATLFVVVTFVRYNDTPIV--KASGRELSYVLLAG 632
Query: 59 VFLGFGSLFLLLA 71
+FL + + FL++A
Sbjct: 633 IFLCYATTFLMIA 645
>sp|Q68EF4|GRM4_MOUSE Metabotropic glutamate receptor 4 OS=Mus musculus GN=Grm4 PE=2 SV=2
Length = 912
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 3 PKPITSPVPDAWYPTLSVFMLAIG----LFVTASFFIYEATSSRQNRSLGKELITGAVAS 58
P PI D+ + L +F+ +G LFV +F Y T ++ G+EL +A
Sbjct: 575 PIPIVKLEWDSPWAVLPLFLAVVGIAATLFVVVTFVRYNDTPIV--KASGRELSYVLLAG 632
Query: 59 VFLGFGSLFLLLA 71
+FL + + FL++A
Sbjct: 633 IFLCYATTFLMIA 645
>sp|Q1ZZH0|GRM4_MACFA Metabotropic glutamate receptor 4 OS=Macaca fascicularis GN=GRM4
PE=2 SV=1
Length = 912
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 3 PKPITSPVPDAWYPTLSVFMLAIG----LFVTASFFIYEATSSRQNRSLGKELITGAVAS 58
P PI D+ + L +F+ +G LFV +F Y T ++ G+EL +A
Sbjct: 575 PIPIIKLEWDSPWAVLPLFLAVVGIAATLFVVITFVRYNDTPIV--KASGRELSYVLLAG 632
Query: 59 VFLGFGSLFLLLA 71
+FL + + FL++A
Sbjct: 633 IFLCYATTFLMIA 645
>sp|P58163|NORM_CAUCR Probable multidrug resistance protein NorM OS=Caulobacter
crescentus (strain ATCC 19089 / CB15) GN=norM PE=3 SV=1
Length = 471
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 13 AWYPTLSVFMLA-IGLFVTASFFIYEATSSRQNRSLGKELITGAVASVFLGFGSLFLL 69
AW P+ SVF+ A +GL V A + G L G V + +LGFGS+ LL
Sbjct: 71 AWAPS-SVFVTATVGLLVGVQVMTARAMGAGNPHETGAVLRRGLVYAGWLGFGSMALL 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,397,338
Number of Sequences: 539616
Number of extensions: 708481
Number of successful extensions: 2445
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2431
Number of HSP's gapped (non-prelim): 19
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)