Query 035000
Match_columns 76
No_of_seqs 102 out of 129
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:41:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8f_C Cytochrome C oxidase po 57.9 18 0.00061 18.7 4.5 28 12-39 3-30 (34)
2 3kcu_A Probable formate transp 47.7 20 0.00068 25.8 3.8 30 40-69 24-53 (285)
3 3kly_A Putative formate transp 45.9 19 0.00065 25.8 3.4 30 40-69 23-52 (280)
4 4fc4_A Nitrite transporter NIR 40.9 26 0.00087 24.9 3.4 27 43-69 20-46 (261)
5 3tds_E Formate/nitrite transpo 29.3 75 0.0025 22.6 4.3 26 44-69 24-49 (268)
6 1jb0_X Photosystem I subunit P 16.1 1.4E+02 0.0046 15.4 2.8 17 18-34 15-31 (35)
7 3kg2_A Glutamate receptor 2; I 10.0 2.7E+02 0.0092 21.2 3.6 33 9-42 777-809 (823)
8 1q90_R Cytochrome B6-F complex 9.2 2.7E+02 0.0093 14.9 3.4 22 44-65 11-32 (49)
9 2d9e_A Peregrin; four-helix bu 9.2 1.1E+02 0.0037 18.7 1.0 16 3-18 25-40 (121)
10 2zy9_A Mg2+ transporter MGTE; 9.1 2.8E+02 0.0095 20.6 3.3 20 44-63 376-395 (473)
No 1
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=57.92 E-value=18 Score=18.67 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=21.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 035000 12 DAWYPTLSVFMLAIGLFVTASFFIYEAT 39 (76)
Q Consensus 12 ~~~~p~la~~lL~igl~~~~~F~i~~vt 39 (76)
++.-.+++.++..-++...+||.+|-+-
T Consensus 3 ~~l~GTl~~V~ilg~~I~i~W~~vf~lF 30 (34)
T 3s8f_C 3 EKPKGALAVILVLTLTILVFWLGVYAVF 30 (34)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceehHHHHHHHHHHHHHHHHHeee
Confidence 3445678888888889999999987654
No 2
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=47.67 E-value=20 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=21.6
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035000 40 SSRQNRSLGKELITGAVASVFLGFGSLFLL 69 (76)
Q Consensus 40 ~~k~~r~l~ke~~la~~ASlflGfG~vFl~ 69 (76)
..|.+|+..|.++.|..|-++.|+|.++..
T Consensus 24 ~~K~~~~~~~~~~~~ilAG~~I~~g~~~~~ 53 (285)
T 3kcu_A 24 VYKATKHPLKTFYLAITAGVFISIAFVFYI 53 (285)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688889999999999999999987654
No 3
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=45.90 E-value=19 Score=25.82 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=24.2
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035000 40 SSRQNRSLGKELITGAVASVFLGFGSLFLL 69 (76)
Q Consensus 40 ~~k~~r~l~ke~~la~~ASlflGfG~vFl~ 69 (76)
..|.+|+..|.++.|..|-.+.|+|.++..
T Consensus 23 ~~K~~~~~~~~~~~~~~AG~~I~~g~~~~~ 52 (280)
T 3kly_A 23 EGKAKKAAYKSFLLAISAGIQIGIAFVFYT 52 (280)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999987654
No 4
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=40.94 E-value=26 Score=24.92 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=23.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035000 43 QNRSLGKELITGAVASVFLGFGSLFLL 69 (76)
Q Consensus 43 ~~r~l~ke~~la~~ASlflGfG~vFl~ 69 (76)
.+|+..+.++.|..|-++.|+|.++..
T Consensus 20 ~~~~~~~~~~~~~~AG~~I~~g~~~~~ 46 (261)
T 4fc4_A 20 SANNPLGFWVSSAMAGAYVGLGIILIF 46 (261)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999998754
No 5
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=29.29 E-value=75 Score=22.59 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=23.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 035000 44 NRSLGKELITGAVASVFLGFGSLFLL 69 (76)
Q Consensus 44 ~r~l~ke~~la~~ASlflGfG~vFl~ 69 (76)
+|+..|.++.|..|-++.|+|.++..
T Consensus 24 ~~~~~~~~~~~~~AG~~I~~g~~~~~ 49 (268)
T 3tds_E 24 NTSKVKYLVSSAFAGLYVGIGILLIF 49 (268)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999998754
No 6
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=16.07 E-value=1.4e+02 Score=15.40 Aligned_cols=17 Identities=41% Similarity=0.784 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035000 18 LSVFMLAIGLFVTASFF 34 (76)
Q Consensus 18 la~~lL~igl~~~~~F~ 34 (76)
.++++|.|-++..++.|
T Consensus 15 WalllLaINflVAayYF 31 (35)
T 1jb0_X 15 WAVLLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68899999998888775
No 7
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=10.00 E-value=2.7e+02 Score=21.17 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=24.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 035000 9 PVPDAWYPTLSVFMLAIGLFVTASFFIYEATSSR 42 (76)
Q Consensus 9 pV~~~~~p~la~~lL~igl~~~~~F~i~~vt~~k 42 (76)
+++.+.. .-++.++++|+.+...-++.|....+
T Consensus 777 ~L~l~~l-~g~f~il~~g~~la~~vf~~E~~~~~ 809 (823)
T 3kg2_A 777 ALSLSNV-AGVFYILVGGLGLAMLVALIEFCYKS 809 (823)
T ss_dssp SCCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccchhhh-hhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444433 56788899999999888899987654
No 8
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=9.20 E-value=2.7e+02 Score=14.94 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 035000 44 NRSLGKELITGAVASVFLGFGS 65 (76)
Q Consensus 44 ~r~l~ke~~la~~ASlflGfG~ 65 (76)
.|++.+.++++..|-...+...
T Consensus 11 RRqfln~l~~G~~a~~a~~~~~ 32 (49)
T 1q90_R 11 KRNIMNLILAGGAGLPITTLAL 32 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999888766665543
No 9
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=9.16 E-value=1.1e+02 Score=18.70 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=12.9
Q ss_pred CCCCcCCCCCCchHHH
Q 035000 3 PKPITSPVPDAWYPTL 18 (76)
Q Consensus 3 ~~py~~pV~~~~~p~l 18 (76)
+.||.-||+++.+|.+
T Consensus 25 ~~~F~~pv~~~~~pdY 40 (121)
T 2d9e_A 25 GNIFSEPVPLSEVPDY 40 (121)
T ss_dssp SCSSSSCCCTTTCTTH
T ss_pred cHhhCCcCCccccCCH
Confidence 5688899998888865
No 10
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=9.10 E-value=2.8e+02 Score=20.56 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 035000 44 NRSLGKELITGAVASVFLGF 63 (76)
Q Consensus 44 ~r~l~ke~~la~~ASlflGf 63 (76)
.|-+.||+.+|++=.+.+|.
T Consensus 376 ~~~~~ke~~~~~~~g~~~~~ 395 (473)
T 2zy9_A 376 RRVFLKEMGVGLLLGLTLSF 395 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56689999988886666664
Done!