Query 035000
Match_columns 76
No_of_seqs 102 out of 129
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 13:41:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035000.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035000hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 31.2 17 0.0012 16.9 2.1 17 18-34 7-23 (30)
2 d2yvxa3 f.57.1.1 (A:276-448) M 17.4 48 0.0035 20.5 2.9 21 43-63 77-97 (173)
3 d1jb0x_ f.23.20.1 (X:) Subunit 16.8 54 0.0039 14.9 2.8 18 17-34 8-25 (29)
4 d1eqfa2 a.29.2.1 (A:1498-1625) 12.4 25 0.0018 20.4 0.4 17 3-19 28-44 (128)
5 d1xmec1 f.23.9.1 (C:2-34) Bact 10.8 93 0.0067 14.4 3.6 22 18-39 8-29 (33)
6 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 10.7 31 0.0023 19.3 0.4 16 3-18 21-36 (111)
7 d3d7ca1 a.29.2.1 (A:731-832) G 8.2 38 0.0028 18.6 0.0 16 3-18 20-35 (102)
8 d1eqfa1 a.29.2.1 (A:1359-1497) 6.8 57 0.0041 18.9 0.4 16 3-18 44-59 (139)
9 d1xmea1 f.24.1.1 (A:14-562) Ba 6.5 3.8E+02 0.028 18.9 5.0 29 6-34 122-150 (549)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 5.0 2.1E+02 0.015 13.5 4.9 34 1-34 1-36 (37)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=31.22 E-value=17 Score=16.91 Aligned_cols=17 Identities=41% Similarity=0.669 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035000 18 LSVFMLAIGLFVTASFF 34 (76)
Q Consensus 18 la~~lL~igl~~~~~F~ 34 (76)
.-+..++||+++.+.|+
T Consensus 7 v~ifac~i~lfffaiff 23 (30)
T d2axtt1 7 VFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34566889999888886
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=17.36 E-value=48 Score=20.50 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=16.2
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 035000 43 QNRSLGKELITGAVASVFLGF 63 (76)
Q Consensus 43 ~~r~l~ke~~la~~ASlflGf 63 (76)
..|.+.||...++.=.+.+|+
T Consensus 77 ~~~~l~kE~~vgll~G~~l~~ 97 (173)
T d2yvxa3 77 WRRVFLKEMGVGLLLGLTLSF 97 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367888999888887776665
No 3
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=16.84 E-value=54 Score=14.90 Aligned_cols=18 Identities=39% Similarity=0.700 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035000 17 TLSVFMLAIGLFVTASFF 34 (76)
Q Consensus 17 ~la~~lL~igl~~~~~F~ 34 (76)
..|.++|+|-+...++.|
T Consensus 8 ~wa~lllainflvaayyf 25 (29)
T d1jb0x_ 8 FWAVLLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467889999988888775
No 4
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.39 E-value=25 Score=20.41 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=13.1
Q ss_pred CCCCcCCCCCCchHHHH
Q 035000 3 PKPITSPVPDAWYPTLS 19 (76)
Q Consensus 3 ~~py~~pV~~~~~p~la 19 (76)
+-||.-||+++.+|.+-
T Consensus 28 a~pF~~pVd~~~~PdY~ 44 (128)
T d1eqfa2 28 SWPFHHPVNKKFVPDYY 44 (128)
T ss_dssp CGGGTSCCCTTTSTTHH
T ss_pred CChhcCCCCcccCcCHH
Confidence 45888999998888653
No 5
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=10.83 E-value=93 Score=14.44 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 035000 18 LSVFMLAIGLFVTASFFIYEAT 39 (76)
Q Consensus 18 la~~lL~igl~~~~~F~i~~vt 39 (76)
+++++...-..+..||-+|.+-
T Consensus 8 l~vi~il~l~ilvfw~gv~avf 29 (33)
T d1xmec1 8 LAVILVLTLTILVFWLGVYAVF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444444566777766553
No 6
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.71 E-value=31 Score=19.33 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=12.7
Q ss_pred CCCCcCCCCCCchHHH
Q 035000 3 PKPITSPVPDAWYPTL 18 (76)
Q Consensus 3 ~~py~~pV~~~~~p~l 18 (76)
+.||.-||+++.+|.+
T Consensus 21 a~pF~~pvd~~~~pdY 36 (111)
T d1e6ia_ 21 AWPFLQPVNKEEVPDY 36 (111)
T ss_dssp CGGGSSCCCTTTSTTH
T ss_pred ChhhcCCCCchhCcCH
Confidence 5688899999888854
No 7
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.21 E-value=38 Score=18.64 Aligned_cols=16 Identities=25% Similarity=0.379 Sum_probs=12.3
Q ss_pred CCCCcCCCCCCchHHH
Q 035000 3 PKPITSPVPDAWYPTL 18 (76)
Q Consensus 3 ~~py~~pV~~~~~p~l 18 (76)
+.||.-||++...|.+
T Consensus 20 s~~F~~pv~~~~~pdY 35 (102)
T d3d7ca1 20 AWPFMEPVKKSEAPDY 35 (102)
T ss_dssp GGGGSSCCCTTTSTTH
T ss_pred CCccCCCCChhhCcCH
Confidence 4578888988888854
No 8
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.77 E-value=57 Score=18.95 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=12.6
Q ss_pred CCCCcCCCCCCchHHH
Q 035000 3 PKPITSPVPDAWYPTL 18 (76)
Q Consensus 3 ~~py~~pV~~~~~p~l 18 (76)
+.||.-||+++..|.+
T Consensus 44 s~pF~~Pvd~~~~pdY 59 (139)
T d1eqfa1 44 TYPFHTPVNAKVVKDY 59 (139)
T ss_dssp CGGGTSCCCTTTSTTH
T ss_pred chhhhCCCChhhccCH
Confidence 5678889998888854
No 9
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=6.49 E-value=3.8e+02 Score=18.85 Aligned_cols=29 Identities=14% Similarity=0.324 Sum_probs=22.1
Q ss_pred CcCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 035000 6 ITSPVPDAWYPTLSVFMLAIGLFVTASFF 34 (76)
Q Consensus 6 y~~pV~~~~~p~la~~lL~igl~~~~~F~ 34 (76)
+.||.+-+..+.+...+..+|......+.
T Consensus 122 ~Y~PL~~~~~~~ig~~l~vv~~~~~i~~~ 150 (549)
T d1xmea1 122 FYPPLKGHWAFYLGASVFVLSTWVSIYIV 150 (549)
T ss_dssp TCTTBCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccchhhHHHHHHHHHHHHHHHH
Confidence 56787778888888888888877655554
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.03 E-value=2.1e+02 Score=13.50 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=0.0
Q ss_pred CCCCCCcCCCCCCchHHHHHHHHH--HHHHHHHHHH
Q 035000 1 MAPKPITSPVPDAWYPTLSVFMLA--IGLFVTASFF 34 (76)
Q Consensus 1 ~a~~py~~pV~~~~~p~la~~lL~--igl~~~~~F~ 34 (76)
|...|=.-||....-..+-=+|++ .|.+|.++||
T Consensus 1 ~~pnpn~q~veLNrtsLy~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 1 MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp CCCCSSCCCBCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHhc
Done!