Query 035002
Match_columns 76
No_of_seqs 143 out of 1388
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:23:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 99.7 3E-17 6.4E-22 101.7 6.3 66 1-66 433-499 (499)
2 KOG0157 Cytochrome P450 CYP4/C 99.7 6.3E-17 1.4E-21 100.4 6.3 64 1-66 433-496 (497)
3 PLN02169 fatty acid (omega-1)- 99.7 2.6E-16 5.6E-21 97.7 7.4 63 1-65 437-499 (500)
4 PLN00168 Cytochrome P450; Prov 99.7 3E-16 6.4E-21 97.6 6.4 66 1-66 452-517 (519)
5 PLN00110 flavonoid 3',5'-hydro 99.6 3.9E-16 8.5E-21 96.9 6.0 67 1-67 432-498 (504)
6 PLN02426 cytochrome P450, fami 99.6 1.1E-15 2.5E-20 94.9 7.5 66 1-66 435-500 (502)
7 PLN03195 fatty acid omega-hydr 99.6 7.6E-16 1.7E-20 95.7 6.7 64 1-66 453-516 (516)
8 PLN02738 carotene beta-ring hy 99.6 1.7E-15 3.6E-20 96.4 6.9 67 1-68 531-597 (633)
9 PTZ00404 cytochrome P450; Prov 99.6 1.5E-15 3.3E-20 93.6 6.4 64 1-65 419-482 (482)
10 PLN02290 cytokinin trans-hydro 99.6 2.2E-15 4.8E-20 93.6 6.9 64 1-66 452-515 (516)
11 PLN03234 cytochrome P450 83B1; 99.6 2.4E-15 5.2E-20 93.1 6.2 65 1-65 431-498 (499)
12 PLN02394 trans-cinnamate 4-mon 99.6 3.5E-15 7.5E-20 92.4 6.8 66 1-66 435-502 (503)
13 PF00067 p450: Cytochrome P450 99.6 1.4E-15 3.1E-20 91.4 5.0 40 1-40 402-441 (463)
14 PLN03112 cytochrome P450 famil 99.6 4E-15 8.6E-20 92.4 6.5 67 1-67 440-509 (514)
15 PLN02971 tryptophan N-hydroxyl 99.6 4.3E-15 9.4E-20 93.0 6.3 65 1-66 469-534 (543)
16 PLN02655 ent-kaurene oxidase 99.6 6.2E-15 1.4E-19 90.8 6.9 66 1-67 400-465 (466)
17 PLN02936 epsilon-ring hydroxyl 99.6 5.8E-15 1.3E-19 91.4 6.7 66 1-68 419-484 (489)
18 PLN02687 flavonoid 3'-monooxyg 99.6 5.2E-15 1.1E-19 92.1 6.2 66 1-66 441-509 (517)
19 PLN02774 brassinosteroid-6-oxi 99.6 6.8E-15 1.5E-19 90.5 6.6 60 1-64 403-462 (463)
20 PLN03141 3-epi-6-deoxocathaste 99.6 6.1E-15 1.3E-19 90.5 6.2 61 1-66 390-450 (452)
21 PLN02183 ferulate 5-hydroxylas 99.6 5.8E-15 1.3E-19 91.9 6.1 65 1-65 444-511 (516)
22 PLN03018 homomethionine N-hydr 99.6 1.5E-14 3.2E-19 90.6 7.2 65 1-66 459-524 (534)
23 PLN02302 ent-kaurenoic acid ox 99.6 1.8E-14 3.9E-19 88.8 6.7 63 1-66 426-488 (490)
24 KOG0159 Cytochrome P450 CYP11/ 99.5 1.2E-14 2.7E-19 89.8 5.8 64 1-66 455-518 (519)
25 KOG0684 Cytochrome P450 [Secon 99.5 2.2E-14 4.8E-19 87.7 5.9 65 1-66 421-485 (486)
26 PLN02987 Cytochrome P450, fami 99.5 2.7E-14 5.9E-19 88.3 6.3 62 1-66 408-469 (472)
27 PLN02196 abscisic acid 8'-hydr 99.5 3.6E-14 7.7E-19 87.4 6.2 62 1-65 401-462 (463)
28 PLN02966 cytochrome P450 83A1 99.5 6.3E-14 1.4E-18 87.0 7.1 39 1-39 432-470 (502)
29 PLN02500 cytochrome P450 90B1 99.5 5.2E-14 1.1E-18 87.1 6.6 60 1-64 429-488 (490)
30 KOG0156 Cytochrome P450 CYP2 s 99.5 6.3E-14 1.4E-18 87.1 5.8 63 1-65 425-487 (489)
31 COG2124 CypX Cytochrome P450 [ 99.3 1.2E-11 2.5E-16 75.7 5.4 39 1-39 349-387 (411)
32 PLN02648 allene oxide synthase 99.1 2.6E-10 5.7E-15 71.1 4.4 38 3-40 425-463 (480)
33 PF09201 SRX: SRX; InterPro: 83.7 1.4 3E-05 24.0 2.3 24 9-32 18-41 (148)
34 KOG3506 40S ribosomal protein 79.8 0.86 1.9E-05 20.7 0.6 10 3-12 13-22 (56)
35 PF12444 Sox_N: Sox developmen 75.2 3.2 7E-05 20.6 1.9 20 19-38 60-79 (84)
36 PTZ00218 40S ribosomal protein 52.0 6.7 0.00014 17.8 0.5 10 3-12 11-20 (54)
37 PHA03162 hypothetical protein; 42.9 27 0.0006 18.9 2.0 23 5-27 2-24 (135)
38 PRK00801 hypothetical protein; 41.1 29 0.00062 20.1 2.0 30 7-36 55-89 (201)
39 PF13947 GUB_WAK_bind: Wall-as 33.3 22 0.00048 17.8 0.7 10 2-12 15-24 (106)
40 PF07886 BA14K: BA14K-like pro 32.9 24 0.00053 14.0 0.7 12 1-12 20-31 (31)
41 PF09300 Tecti-min-caps: Tecti 29.0 27 0.00058 16.5 0.5 13 1-13 45-57 (84)
42 COG0445 GidA Flavin-dependent 29.0 27 0.00059 23.7 0.7 9 5-13 268-276 (621)
43 PF02663 FmdE: FmdE, Molybdenu 25.9 59 0.0013 17.1 1.6 21 9-29 5-25 (131)
44 PF15442 DUF4629: Domain of un 23.6 35 0.00076 18.9 0.5 10 8-17 128-137 (150)
45 TIGR00136 gidA glucose-inhibit 21.4 48 0.001 22.7 0.8 10 5-14 266-275 (617)
46 PRK10224 pyrBI operon leader p 20.9 59 0.0013 13.7 0.8 12 3-14 31-42 (44)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=3e-17 Score=101.66 Aligned_cols=66 Identities=30% Similarity=0.540 Sum_probs=54.2
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccc-cccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMT-EGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|.+||++|+++.++.++++|+++..+....... ......+.|++++++++++|.
T Consensus 433 ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~~~~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 433 YLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTIIPLEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred ccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcccCcccCCccceeeecCCceEEEEEeCC
Confidence 789999999999999999999999999999999998773222211 112677788889999999874
No 2
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.69 E-value=6.3e-17 Score=100.45 Aligned_cols=64 Identities=28% Similarity=0.479 Sum_probs=55.5
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||+|+|.|+|++||++||+++++.++++|+|++..+.. ......+.+.+++++++++.+|.
T Consensus 433 fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~--~~~~~~~~l~~~~gl~v~~~~r~ 496 (497)
T KOG0157|consen 433 FIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDK--PKPVPELTLRPKNGLKVKLRPRG 496 (497)
T ss_pred ccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCC--ceeeeEEEEEecCCeEEEEEeCC
Confidence 68999999999999999999999999999999999876542 23345778888899999999885
No 3
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.67 E-value=2.6e-16 Score=97.69 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=52.4
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeC
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPR 65 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 65 (76)
|+|||+|+|.|+|++||++|++++++.++++|++++.++..+ .......+.+++++++++++|
T Consensus 437 ~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~~~--~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 437 FMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGHKI--EAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred ccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCCCc--ccccceEEecCCCEEEEEEeC
Confidence 689999999999999999999999999999999988654322 223356677888999999876
No 4
>PLN00168 Cytochrome P450; Provisional
Probab=99.66 E-value=3e-16 Score=97.62 Aligned_cols=66 Identities=33% Similarity=0.698 Sum_probs=51.8
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|++||.+|++++++.++++|++++.++...+......+...+++++++.+++|.
T Consensus 452 ~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 517 (519)
T PLN00168 452 MMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGDEVDFAEKREFTTVMAKPLRARLVPRR 517 (519)
T ss_pred eeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCCcCChhhhceeEEeecCCcEEEEEecc
Confidence 589999999999999999999999999999999998754332322222344555568889988875
No 5
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.65 E-value=3.9e-16 Score=96.93 Aligned_cols=67 Identities=36% Similarity=0.719 Sum_probs=54.5
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCcc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRPI 67 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 67 (76)
|+|||.|+|.|+|+++|+.|++++++.++++|++++.++..........+.+.++.++.+.+++|..
T Consensus 432 ~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 498 (504)
T PLN00110 432 LIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGVELNMDEAFGLALQKAVPLSAMVTPRLH 498 (504)
T ss_pred EeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCCccCcccccccccccCCCceEeeccCCC
Confidence 5899999999999999999999999999999999986654322222345666677899999999863
No 6
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.64 E-value=1.1e-15 Score=94.95 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=53.0
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|+++|++|++++++.++++|++++.++..............+++++++++++|.
T Consensus 435 ~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~r~ 500 (502)
T PLN02426 435 YPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVRERV 500 (502)
T ss_pred cCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCCCCCcccceeEEecCCCEEEEEEEcc
Confidence 579999999999999999999999999999999998643221112233566777889999998874
No 7
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.64 E-value=7.6e-16 Score=95.66 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=51.2
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|+++|++|++++++.++++|++++.++.... ......+.++.++++++++|+
T Consensus 453 ~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 453 FTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHPVK--YRMMTILSMANGLKVTVSRRS 516 (516)
T ss_pred EeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCCcce--eeeeeEEecCCCEEEEEEeCC
Confidence 5899999999999999999999999999999999986543222 222344567778999988764
No 8
>PLN02738 carotene beta-ring hydroxylase
Probab=99.62 E-value=1.7e-15 Score=96.39 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=54.2
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCcch
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRPII 68 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 68 (76)
|+|||.|+|.|+|++||+.|++++++.++++|++++.++.. +........+.+++++++.+++|..+
T Consensus 531 ~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~-~~~~~~~~~~~p~~~l~v~l~~R~~~ 597 (633)
T PLN02738 531 YLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAP-PVKMTTGATIHTTEGLKMTVTRRTKP 597 (633)
T ss_pred eeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCC-CcccccceEEeeCCCcEEEEEECCCC
Confidence 58999999999999999999999999999999999875532 22222345566667999999999744
No 9
>PTZ00404 cytochrome P450; Provisional
Probab=99.62 E-value=1.5e-15 Score=93.59 Aligned_cols=64 Identities=34% Similarity=0.592 Sum_probs=49.5
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeC
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPR 65 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 65 (76)
|+|||.|+|.|+|+++|++|++++++.++++|++++.+++.+.......+...+ .++++.+++|
T Consensus 419 ~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~R 482 (482)
T PTZ00404 419 FMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKKIDETEEYGLTLKP-NKFKVLLEKR 482 (482)
T ss_pred eeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCCCCcccccceeecC-CCceeeeecC
Confidence 589999999999999999999999999999999987654432222223444554 5788887765
No 10
>PLN02290 cytokinin trans-hydroxylase
Probab=99.61 E-value=2.2e-15 Score=93.57 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=52.8
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|+++|++|++++++.++++|++++.++.. ......+...|++++++++++|.
T Consensus 452 ~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~ 515 (516)
T PLN02290 452 FIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR--HAPVVVLTIKPKYGVQVCLKPLN 515 (516)
T ss_pred EecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcc--cCccceeeecCCCCCeEEEEeCC
Confidence 58999999999999999999999999999999998865422 11123467778889999998875
No 11
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.60 E-value=2.4e-15 Score=93.07 Aligned_cols=65 Identities=31% Similarity=0.567 Sum_probs=49.9
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCc-ccccc--cccceeccCCCceeEEEEeC
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQ-KIDMT--EGKGITMPKAEALEVMCKPR 65 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~r 65 (76)
|+|||.|+|.|+|+++|++|++++++.++++|++++.++. ..+.. ...++...++..+++..+.|
T Consensus 431 ~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 431 LLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 5799999999999999999999999999999999987642 11222 23355556666777776654
No 12
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.60 E-value=3.5e-15 Score=92.43 Aligned_cols=66 Identities=41% Similarity=0.719 Sum_probs=50.8
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcc-ccccccc-ceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQK-IDMTEGK-GITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|+++|++|+++++|.++++|++++.++.+ .+..... +.....+.++.+++.+|.
T Consensus 435 ~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 435 FLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred eeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCCcCccccccCceeeccCCCceEEeecCC
Confidence 57999999999999999999999999999999998865542 2222222 244434458888888875
No 13
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.60 E-value=1.4e-15 Score=91.40 Aligned_cols=40 Identities=35% Similarity=0.705 Sum_probs=36.3
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQ 40 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 40 (76)
|+|||.|+|.|+|+++|+.|++++++.++++|++++.++.
T Consensus 402 ~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~ 441 (463)
T PF00067_consen 402 FLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGS 441 (463)
T ss_dssp SSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTS
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCC
Confidence 6899999999999999999999999999999999996543
No 14
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.59 E-value=4e-15 Score=92.41 Aligned_cols=67 Identities=37% Similarity=0.755 Sum_probs=52.7
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCc-ccccc--cccceeccCCCceeEEEEeCcc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQ-KIDMT--EGKGITMPKAEALEVMCKPRPI 67 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~r~~ 67 (76)
|+|||.|+|.|+|+++|++|++++++.++++|++++.++. ..+.. ....+...+++++++.+.+|..
T Consensus 440 ~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 509 (514)
T PLN03112 440 ILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRLA 509 (514)
T ss_pred eeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCCc
Confidence 5899999999999999999999999999999999986432 11222 2234555566799999999963
No 15
>PLN02971 tryptophan N-hydroxylase
Probab=99.59 E-value=4.3e-15 Score=92.98 Aligned_cols=65 Identities=23% Similarity=0.529 Sum_probs=51.7
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCc-ccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQ-KIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|+++|+.|++++++.++++|++++.+++ ..++....+ ++..++++.+.+++|.
T Consensus 469 ~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 534 (543)
T PLN02971 469 FISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETRVELMESSH-DMFLSKPLVMVGELRL 534 (543)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCCCcchhhhcC-cccccccceeeeeecC
Confidence 6899999999999999999999999999999999986543 334433344 4433458888888884
No 16
>PLN02655 ent-kaurene oxidase
Probab=99.59 E-value=6.2e-15 Score=90.76 Aligned_cols=66 Identities=29% Similarity=0.485 Sum_probs=53.1
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCcc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRPI 67 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 67 (76)
++|||.|+|.|+|++||..+++++++.++.+|++++.++.. +.....++...++.++.+.+.+|..
T Consensus 400 ~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 400 TMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDE-EKEDTVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred ccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc-cccchhheeEeecCCcEEEEeecCC
Confidence 58999999999999999999999999999999999865432 1222335556677799999988753
No 17
>PLN02936 epsilon-ring hydroxylase
Probab=99.58 E-value=5.8e-15 Score=91.42 Aligned_cols=66 Identities=26% Similarity=0.327 Sum_probs=53.6
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCcch
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRPII 68 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 68 (76)
|+|||.|+|.|+|+++|++|++++++.++++|++++.++++.. ....+...++.++++++++|...
T Consensus 419 ~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~R~~~ 484 (489)
T PLN02936 419 YIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQDIV--MTTGATIHTTNGLYMTVSRRRVP 484 (489)
T ss_pred eeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCCccc--eecceEEeeCCCeEEEEEeeeCC
Confidence 5899999999999999999999999999999999987654322 22235555667999999998754
No 18
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.58 E-value=5.2e-15 Score=92.09 Aligned_cols=66 Identities=36% Similarity=0.717 Sum_probs=50.1
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCccc-cc--ccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKI-DM--TEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|++||.+|++++++.++++|++++.++... +. .........+..++++++++|.
T Consensus 441 ~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 509 (517)
T PLN02687 441 LIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPRL 509 (517)
T ss_pred eCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccCC
Confidence 589999999999999999999999999999999998654321 11 1222344445557888888774
No 19
>PLN02774 brassinosteroid-6-oxidase
Probab=99.58 E-value=6.8e-15 Score=90.53 Aligned_cols=60 Identities=27% Similarity=0.508 Sum_probs=48.0
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEe
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKP 64 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (76)
|+|||+|+|.|+|+++|.+|++++++.++++|++++.++.... ......|++++++++++
T Consensus 403 ~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~~~----~~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 403 FFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGDKLM----KFPRVEAPNGLHIRVSP 462 (463)
T ss_pred ccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCCccc----cCCCCCCCCCceEEeee
Confidence 5899999999999999999999999999999999987653321 11233366788888874
No 20
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.58 E-value=6.1e-15 Score=90.49 Aligned_cols=61 Identities=26% Similarity=0.432 Sum_probs=50.9
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|+++|.+|++++++.++++|++++.++... ...++.+++++.+.+++|+
T Consensus 390 ~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 450 (452)
T PLN03141 390 FTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDTIV-----NFPTVRMKRKLPIWVTRID 450 (452)
T ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCCee-----ecccccCCCCceEEEEeCC
Confidence 689999999999999999999999999999999987654321 1235567789999999885
No 21
>PLN02183 ferulate 5-hydroxylase
Probab=99.58 E-value=5.8e-15 Score=91.86 Aligned_cols=65 Identities=37% Similarity=0.717 Sum_probs=47.8
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccc-cc--cccceeccCCCceeEEEEeC
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKID-MT--EGKGITMPKAEALEVMCKPR 65 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~r 65 (76)
|+|||.|+|.|+|+++|++|+++++|.++++|++++.++...+ .. ...+.......++.+...+|
T Consensus 444 ~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 511 (516)
T PLN02183 444 FIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR 511 (516)
T ss_pred ecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence 5899999999999999999999999999999999886643211 21 12233333444667776666
No 22
>PLN03018 homomethionine N-hydroxylase
Probab=99.56 E-value=1.5e-14 Score=90.61 Aligned_cols=65 Identities=22% Similarity=0.459 Sum_probs=50.3
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCc-ccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQ-KIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|+++|++|++++++.++++|++++.++. ..+..........+ .++++.+++|.
T Consensus 459 ~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~p-~~~~v~~~~R~ 524 (534)
T PLN03018 459 FVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFGPLSLEEDDASLLMA-KPLLLSVEPRL 524 (534)
T ss_pred ccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCCCCCccccccceecC-CCeEEEEEecc
Confidence 5799999999999999999999999999999999976542 22221122333334 58999999994
No 23
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.55 E-value=1.8e-14 Score=88.84 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=50.8
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|+++|..|++++++.++++|++++.++.. ... ......|++++.+.+++|.
T Consensus 426 ~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~-~~~--~~~~~~p~~~~~~~~~~~~ 488 (490)
T PLN02302 426 FLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPGC-KVM--YLPHPRPKDNCLARITKVA 488 (490)
T ss_pred ccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCCC-cce--eCCCCCCCCCceEEEEecc
Confidence 58999999999999999999999999999999999875432 211 2223667778899988775
No 24
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.55 E-value=1.2e-14 Score=89.84 Aligned_cols=64 Identities=25% Similarity=0.411 Sum_probs=53.8
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
++|||.|+|+|+|+++|.+|+.+.+++++++|+++.....+ ......+.+.|..++.+++.+|.
T Consensus 455 ~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~~p--v~~~~~~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 455 SLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHEEP--VEYVYRFILVPNRPLRFKFRPRN 518 (519)
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCCCC--ccceeEEEEcCCCCcceeeeeCC
Confidence 47999999999999999999999999999999998876433 33345667778789999988774
No 25
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.53 E-value=2.2e-14 Score=87.66 Aligned_cols=65 Identities=28% Similarity=0.480 Sum_probs=53.3
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|||||+|.+.|+|+.||.+|++.++..+++.||+++.++.-++.+. ..+...|.++++++.+.|.
T Consensus 421 ~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~~P~~d~-s~~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 421 YMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDGPFPEVDY-SRMVMQPEGDVRIRYKRRP 485 (486)
T ss_pred ccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCCCCCCCCH-HHhhcCCCCCceEEEeecC
Confidence 5999999999999999999999999999999999998863223222 3446678889988887764
No 26
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.53 E-value=2.7e-14 Score=88.30 Aligned_cols=62 Identities=29% Similarity=0.435 Sum_probs=51.5
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeCc
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPRP 66 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 66 (76)
|+|||.|+|.|+|+++|..|++++++.++.+|++++.++... ....+..|.+++.+++++|+
T Consensus 408 ~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~----~~~~~~~p~~~~~~~~~~r~ 469 (472)
T PLN02987 408 FTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDKL----VFFPTTRTQKRYPINVKRRD 469 (472)
T ss_pred eECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCCce----eecccccCCCCceEEEEecc
Confidence 579999999999999999999999999999999998654321 12336667778999999885
No 27
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.52 E-value=3.6e-14 Score=87.43 Aligned_cols=62 Identities=24% Similarity=0.520 Sum_probs=48.8
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeC
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPR 65 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 65 (76)
|+|||.|+|.|+|+++|+.|++++++.++++|++++.++.. .. .......|++++.++++..
T Consensus 401 ~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~-~~--~~~~~~~p~~~~~~~~~~~ 462 (463)
T PLN02196 401 FMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTSN-GI--QYGPFALPQNGLPIALSRK 462 (463)
T ss_pred ccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCC-ce--EEcccccCCCCceEEEecC
Confidence 68999999999999999999999999999999999865421 22 2232345777888887653
No 28
>PLN02966 cytochrome P450 83A1
Probab=99.52 E-value=6.3e-14 Score=87.02 Aligned_cols=39 Identities=33% Similarity=0.752 Sum_probs=36.9
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccC
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGC 39 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 39 (76)
|+|||.|+|.|+|++||++|++++++.++++|++++.++
T Consensus 432 ~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~ 470 (502)
T PLN02966 432 FIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNG 470 (502)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCC
Confidence 689999999999999999999999999999999998665
No 29
>PLN02500 cytochrome P450 90B1
Probab=99.52 E-value=5.2e-14 Score=87.12 Aligned_cols=60 Identities=25% Similarity=0.474 Sum_probs=46.2
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEe
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKP 64 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (76)
|+|||.|+|.|+|+++|++|++++++.++++|+|++.++.. ... .... .+.+++.+++.+
T Consensus 429 ~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~-~~~--~~~~-~~~~~l~~~~~~ 488 (490)
T PLN02500 429 FMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQ-AFA--FPFV-DFPKGLPIRVRR 488 (490)
T ss_pred CcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCc-cee--cccc-cCCCCceEEEEe
Confidence 58999999999999999999999999999999999866532 111 1122 223578887765
No 30
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.49 E-value=6.3e-14 Score=87.15 Aligned_cols=63 Identities=46% Similarity=0.859 Sum_probs=49.9
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccCcccccccccceeccCCCceeEEEEeC
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGCQKIDMTEGKGITMPKAEALEVMCKPR 65 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 65 (76)
++|||.|+|.|+|..+|++++.++++.++++|+|++.++ .++.... ......+.++.+...+|
T Consensus 425 ~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~-~~d~~e~-~~~~~~~~pl~~~~~~r 487 (489)
T KOG0156|consen 425 LIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG-KVDMEEA-GLTLKKKKPLKAVPVPR 487 (489)
T ss_pred ecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC-CCCCccc-ccceecCCcceeeeecC
Confidence 589999999999999999999999999999999998766 4454444 24455555666665554
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.27 E-value=1.2e-11 Score=75.70 Aligned_cols=39 Identities=28% Similarity=0.492 Sum_probs=36.0
Q ss_pred CcccCCCccCCCChhHHHHHHHHHHHHHhhhceeeeccC
Q 035002 1 MMPFGLGRRACPGMGLAQRLVGLTLGSLIQCFEWERIGC 39 (76)
Q Consensus 1 ~~pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 39 (76)
++|||+|+|.|+|.+||++|++++++.++++|++....+
T Consensus 349 ~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~ 387 (411)
T COG2124 349 HLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE 387 (411)
T ss_pred CcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC
Confidence 589999999999999999999999999999999876554
No 32
>PLN02648 allene oxide synthase
Probab=99.05 E-value=2.6e-10 Score=71.09 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=33.6
Q ss_pred ccCCCccCCCChhHHHHHHHHHHHHHhhhce-eeeccCc
Q 035002 3 PFGLGRRACPGMGLAQRLVGLTLGSLIQCFE-WERIGCQ 40 (76)
Q Consensus 3 pFg~G~r~C~G~~~a~~~~~~~~~~~~~~~~-~~~~~~~ 40 (76)
+||+|+|.|+|++||+.|++++++.++++|+ |++.++.
T Consensus 425 ~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~ 463 (480)
T PLN02648 425 SPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDT 463 (480)
T ss_pred CCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCc
Confidence 3477889999999999999999999999998 9886653
No 33
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=83.72 E-value=1.4 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=16.6
Q ss_pred cCCCChhHHHHHHHHHHHHHhhhc
Q 035002 9 RACPGMGLAQRLVGLTLGSLIQCF 32 (76)
Q Consensus 9 r~C~G~~~a~~~~~~~~~~~~~~~ 32 (76)
..|.|+.||..++..++..++..-
T Consensus 18 yN~~gKKFsE~QiN~FIs~lItsP 41 (148)
T PF09201_consen 18 YNCLGKKFSETQINAFISHLITSP 41 (148)
T ss_dssp EETTS----HHHHHHHHHHHHHS-
T ss_pred ecccchHHHHHHHHHHHHHHhcCC
Confidence 469999999999999999988643
No 34
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=79.78 E-value=0.86 Score=20.69 Aligned_cols=10 Identities=50% Similarity=1.139 Sum_probs=8.5
Q ss_pred ccCCCccCCC
Q 035002 3 PFGLGRRACP 12 (76)
Q Consensus 3 pFg~G~r~C~ 12 (76)
+||.|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999884
No 35
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=75.20 E-value=3.2 Score=20.58 Aligned_cols=20 Identities=5% Similarity=0.383 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhceeeecc
Q 035002 19 RLVGLTLGSLIQCFEWERIG 38 (76)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~ 38 (76)
..|+-.+.++|+-|||.++.
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 45788899999999999864
No 36
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=52.04 E-value=6.7 Score=17.82 Aligned_cols=10 Identities=40% Similarity=1.039 Sum_probs=8.1
Q ss_pred ccCCCccCCC
Q 035002 3 PFGLGRRACP 12 (76)
Q Consensus 3 pFg~G~r~C~ 12 (76)
-||.|.|.|.
T Consensus 11 ~yGkGsr~C~ 20 (54)
T PTZ00218 11 TYGKGSRQCR 20 (54)
T ss_pred cCCCCCCeee
Confidence 3789999985
No 37
>PHA03162 hypothetical protein; Provisional
Probab=42.94 E-value=27 Score=18.88 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=15.6
Q ss_pred CCCccCCCChhHHHHHHHHHHHH
Q 035002 5 GLGRRACPGMGLAQRLVGLTLGS 27 (76)
Q Consensus 5 g~G~r~C~G~~~a~~~~~~~~~~ 27 (76)
++|.+.||++....-++-.=+++
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~k 24 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAK 24 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHH
Confidence 46899999998766555444443
No 38
>PRK00801 hypothetical protein; Provisional
Probab=41.14 E-value=29 Score=20.09 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=18.0
Q ss_pred CccCCCChh-----HHHHHHHHHHHHHhhhceeee
Q 035002 7 GRRACPGMG-----LAQRLVGLTLGSLIQCFEWER 36 (76)
Q Consensus 7 G~r~C~G~~-----~a~~~~~~~~~~~~~~~~~~~ 36 (76)
-.|.|+|.- ++.......++..+..-++.+
T Consensus 55 ~LRGCIGs~~p~~pL~~~v~~~A~~AA~~DpRF~P 89 (201)
T PRK00801 55 VLRGCIGFPYPDSPLVEAIIDSAISAATRDPRFPP 89 (201)
T ss_pred eeccccCCCCCcccHHHHHHHHHHHHHcCCCCCCC
Confidence 468999984 455555555555555555543
No 39
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=33.31 E-value=22 Score=17.80 Aligned_cols=10 Identities=50% Similarity=1.328 Sum_probs=7.2
Q ss_pred cccCCCccCCC
Q 035002 2 MPFGLGRRACP 12 (76)
Q Consensus 2 ~pFg~G~r~C~ 12 (76)
-|||.|. .|-
T Consensus 15 YPFgi~~-~C~ 24 (106)
T PF13947_consen 15 YPFGIGP-GCG 24 (106)
T ss_pred CCCccCC-CCC
Confidence 3899887 564
No 40
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=32.91 E-value=24 Score=14.03 Aligned_cols=12 Identities=33% Similarity=0.647 Sum_probs=7.8
Q ss_pred CcccCCCccCCC
Q 035002 1 MMPFGLGRRACP 12 (76)
Q Consensus 1 ~~pFg~G~r~C~ 12 (76)
|+|+.+-.|.|.
T Consensus 20 y~~~~G~r~~C~ 31 (31)
T PF07886_consen 20 YQPYDGPRRFCR 31 (31)
T ss_pred EeCCCCccccCc
Confidence 467776666773
No 41
>PF09300 Tecti-min-caps: Tectiviridae, minor capsid; InterPro: IPR015379 Members of this family form the minor capsid protein of various Tectiviridae []. ; PDB: 1W8X_M.
Probab=28.99 E-value=27 Score=16.49 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=2.8
Q ss_pred CcccCCCccCCCC
Q 035002 1 MMPFGLGRRACPG 13 (76)
Q Consensus 1 ~~pFg~G~r~C~G 13 (76)
|+||-.|++....
T Consensus 45 fmpflqgphrava 57 (84)
T PF09300_consen 45 FMPFLQGPHRAVA 57 (84)
T ss_dssp --S--S----SS-
T ss_pred hhhhhcCchHHHH
Confidence 6788888886544
No 42
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=28.96 E-value=27 Score=23.69 Aligned_cols=9 Identities=56% Similarity=1.335 Sum_probs=7.7
Q ss_pred CCCccCCCC
Q 035002 5 GLGRRACPG 13 (76)
Q Consensus 5 g~G~r~C~G 13 (76)
|.|||.||.
T Consensus 268 g~GPRYCPS 276 (621)
T COG0445 268 GVGPRYCPS 276 (621)
T ss_pred ccCCCCCCC
Confidence 679999997
No 43
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=25.86 E-value=59 Score=17.09 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=14.5
Q ss_pred cCCCChhHHHHHHHHHHHHHh
Q 035002 9 RACPGMGLAQRLVGLTLGSLI 29 (76)
Q Consensus 9 r~C~G~~~a~~~~~~~~~~~~ 29 (76)
|.|+|..++......++..+-
T Consensus 5 H~Cpgl~~G~r~~~~a~~~l~ 25 (131)
T PF02663_consen 5 HLCPGLALGYRMAKYALEELG 25 (131)
T ss_dssp S--HHHHHHHHHHHHHHHHHT
T ss_pred CcCccHHHHHHHHHHHHHHcC
Confidence 789999888887777776653
No 44
>PF15442 DUF4629: Domain of unknown function (DUF4629)
Probab=23.63 E-value=35 Score=18.89 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=8.1
Q ss_pred ccCCCChhHH
Q 035002 8 RRACPGMGLA 17 (76)
Q Consensus 8 ~r~C~G~~~a 17 (76)
+|.|+|.++-
T Consensus 128 PRs~LgMHML 137 (150)
T PF15442_consen 128 PRSCLGMHML 137 (150)
T ss_pred cccccchHHH
Confidence 7999998853
No 45
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=21.40 E-value=48 Score=22.70 Aligned_cols=10 Identities=50% Similarity=1.125 Sum_probs=7.7
Q ss_pred CCCccCCCCh
Q 035002 5 GLGRRACPGM 14 (76)
Q Consensus 5 g~G~r~C~G~ 14 (76)
|.|||.|+--
T Consensus 266 ~~GpRYCpsI 275 (617)
T TIGR00136 266 GNGPRYCPSI 275 (617)
T ss_pred CCCCCCCCCH
Confidence 4599999873
No 46
>PRK10224 pyrBI operon leader peptide; Provisional
Probab=20.88 E-value=59 Score=13.68 Aligned_cols=12 Identities=42% Similarity=0.988 Sum_probs=8.7
Q ss_pred ccCCCccCCCCh
Q 035002 3 PFGLGRRACPGM 14 (76)
Q Consensus 3 pFg~G~r~C~G~ 14 (76)
|..-|.-.|+|-
T Consensus 31 pl~~g~ffcpgv 42 (44)
T PRK10224 31 PLNRGAFFCPGV 42 (44)
T ss_pred cccccccccCcc
Confidence 456678888884
Done!