BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035006
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Query: 1 MEFIK-KQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI---DIEKQEFGLKPMN 56
+EF+K +Q + G+ EV++P +Y LWE SGH NY ++MF + D EK+E+GLKPMN
Sbjct: 71 IEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMN 130
Query: 57 CPGHCLMFDHKVRSYRVLSL 76
CPGHCL+F K RSY L L
Sbjct: 131 CPGHCLIFGKKDRSYNELPL 150
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%)
Query: 3 FIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCL 62
F++ + + YQEV P M + LWE +GH NYK+ MF E +E+ +KPMNCPGH
Sbjct: 280 FVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQ 339
Query: 63 MFDHKVRSYRVLSL 76
+F+ ++SYR L L
Sbjct: 340 IFNQGLKSYRDLPL 353
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
Length = 401
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%)
Query: 3 FIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCL 62
F++ + + YQEV P M + LWE +GH NYK+ MF E +E+ +KPMNCPGH
Sbjct: 39 FVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQ 98
Query: 63 MFDHKVRSYRVLSL 76
+F+ ++SYR L L
Sbjct: 99 IFNQGLKSYRDLPL 112
>pdb|3A32|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix
Length = 471
Score = 69.3 bits (168), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHC 61
E + K + RGY V +P + + +L++ SGH Y+ NM+L DIE EF +KPMNCP H
Sbjct: 57 EVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHI 116
Query: 62 LMFDHKVRSYR 72
L+F ++V +R
Sbjct: 117 LLFLNEVAKHR 127
>pdb|3A31|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix (Selenomethionine
Derivative)
Length = 471
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHC 61
E + K + RGY V +P + + +L++ SGH Y+ N +L DIE EF +KP NCP H
Sbjct: 57 EVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNXYLFDIEGHEFAVKPXNCPYHI 116
Query: 62 LMFDHKVRSYR 72
L+F ++V +R
Sbjct: 117 LLFLNEVAKHR 127
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 12 GYQEVISPNMYNMKLWETSGHAANYKENMF---LIDIEKQEFGLKPMNCPGHCLMFDHKV 68
GY V +P + N+ L++TSGH +Y+E+MF +D E + L+PMNCP H +++ +K
Sbjct: 289 GYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLD-ETESMVLRPMNCPHHMMIYANKP 347
Query: 69 RSYRVLSL 76
SYR L +
Sbjct: 348 HSYRELPI 355
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 15 EVISPNMYNMKLWETSGHAANYKENMF-LIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRV 73
E++ P + +LW+ SG Y N++ L D +++ L P + + ++ SY+
Sbjct: 68 EMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKR 127
Query: 74 LSL 76
L L
Sbjct: 128 LPL 130
>pdb|4E4F|A Chain A, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|B Chain B, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|C Chain C, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|D Chain D, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
Length = 426
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 3 FIKKQYWDRGYQEVISPNMYNMKLWETSGHAAN 35
F K YW RG + + + +M LW+ AAN
Sbjct: 92 FYKGAYWRRGPVTMSAISAVDMALWDIKAKAAN 124
>pdb|2CJA|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Atp
pdb|2CJA|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Atp
Length = 522
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 12 GYQEVISPNMYNMKLWETSGHA 33
GY+E I P + ++W SGHA
Sbjct: 250 GYREXIFPKLVTWEVWXKSGHA 271
>pdb|4IL2|A Chain A, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
pdb|4IL2|B Chain B, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
pdb|4IL2|C Chain C, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
pdb|4IL2|D Chain D, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
Length = 426
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 3 FIKKQYWDRGYQEVISPNMYNMKLWETSGHAAN 35
F K YW RG + + + +M LW+ AAN
Sbjct: 92 FYKGAYWRRGPVTMSAISAVDMALWDIKAKAAN 124
>pdb|2CIM|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-trna
Synthetase
pdb|2CIM|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-trna
Synthetase
pdb|2CJ9|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|2CJ9|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|2CJB|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Serine
pdb|2CJB|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Serine
Length = 522
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 12 GYQEVISPNMYNMKLWETSGHAANYKENMFLI 43
GY+E+I P + ++W SGHA ++ +
Sbjct: 250 GYREMIFPKLVTWEVWMKSGHAKGVYPEIYYV 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,450,002
Number of Sequences: 62578
Number of extensions: 76671
Number of successful extensions: 174
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 11
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)