Query 035006
Match_columns 76
No_of_seqs 112 out of 1067
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1637 Threonyl-tRNA syntheta 100.0 1.5E-29 3.2E-34 182.2 1.9 75 2-76 200-274 (560)
2 COG0441 ThrS Threonyl-tRNA syn 99.9 4.6E-26 1E-30 168.4 4.5 76 1-76 227-302 (589)
3 PRK12325 prolyl-tRNA synthetas 99.9 4.7E-25 1E-29 158.5 6.0 76 1-76 54-130 (439)
4 PLN02837 threonine-tRNA ligase 99.9 6.6E-25 1.4E-29 163.0 5.5 76 1-76 254-330 (614)
5 COG0442 ProS Prolyl-tRNA synth 99.9 6E-25 1.3E-29 160.2 4.5 76 1-76 54-130 (500)
6 PRK14799 thrS threonyl-tRNA sy 99.9 2.5E-24 5.4E-29 158.4 6.2 76 1-76 175-250 (545)
7 PLN02908 threonyl-tRNA synthet 99.9 6.6E-24 1.4E-28 159.1 6.2 76 1-76 328-403 (686)
8 cd00770 SerRS_core Seryl-tRNA 99.9 1.8E-23 3.8E-28 144.2 6.0 74 1-76 59-132 (297)
9 cd00778 ProRS_core_arch_euk Pr 99.9 6.8E-23 1.5E-27 139.1 6.2 76 1-76 39-120 (261)
10 PRK03991 threonyl-tRNA synthet 99.9 3E-22 6.5E-27 149.0 6.5 76 1-76 234-309 (613)
11 PF00587 tRNA-synt_2b: tRNA sy 99.9 1.2E-22 2.7E-27 129.9 2.6 75 2-76 7-84 (173)
12 PRK09194 prolyl-tRNA synthetas 99.9 1E-21 2.2E-26 144.7 6.5 76 1-76 54-130 (565)
13 PRK12444 threonyl-tRNA synthet 99.8 1.1E-21 2.3E-26 146.0 6.1 76 1-76 281-356 (639)
14 TIGR00409 proS_fam_II prolyl-t 99.8 1.1E-21 2.4E-26 145.0 5.6 76 1-76 54-130 (568)
15 KOG2324 Prolyl-tRNA synthetase 99.8 1.6E-21 3.5E-26 137.8 5.7 75 2-76 60-136 (457)
16 cd00771 ThrRS_core Threonyl-tR 99.8 3.5E-21 7.6E-26 132.7 6.7 76 1-76 37-112 (298)
17 TIGR00414 serS seryl-tRNA synt 99.8 5.1E-21 1.1E-25 137.3 6.4 74 1-76 180-253 (418)
18 PRK05431 seryl-tRNA synthetase 99.8 4.3E-21 9.3E-26 137.9 5.8 74 1-76 177-251 (425)
19 cd00779 ProRS_core_prok Prolyl 99.8 9.3E-21 2E-25 128.3 6.1 76 1-76 38-114 (255)
20 cd00772 ProRS_core Prolyl-tRNA 99.8 1.7E-20 3.8E-25 127.7 6.4 75 2-76 40-120 (264)
21 PRK12305 thrS threonyl-tRNA sy 99.8 3.8E-20 8.3E-25 136.1 6.0 75 2-76 214-289 (575)
22 PRK08661 prolyl-tRNA synthetas 99.8 5.7E-20 1.2E-24 133.5 6.1 76 1-76 51-132 (477)
23 TIGR00418 thrS threonyl-tRNA s 99.8 1E-19 2.2E-24 133.5 6.5 76 1-76 207-283 (563)
24 TIGR00408 proS_fam_I prolyl-tR 99.8 1.1E-19 2.3E-24 132.0 6.1 75 2-76 46-126 (472)
25 PRK00960 seryl-tRNA synthetase 99.8 3.5E-19 7.6E-24 130.6 5.3 75 2-76 231-336 (517)
26 PLN02678 seryl-tRNA synthetase 99.8 3.7E-19 8.1E-24 128.7 4.6 76 1-76 181-256 (448)
27 PRK04173 glycyl-tRNA synthetas 99.8 6.2E-20 1.4E-24 132.8 0.2 60 1-60 45-131 (456)
28 PRK00413 thrS threonyl-tRNA sy 99.8 9.6E-19 2.1E-23 129.7 6.4 75 2-76 278-353 (638)
29 cd00670 Gly_His_Pro_Ser_Thr_tR 99.7 7.6E-18 1.6E-22 111.1 6.2 75 2-76 10-89 (235)
30 PLN02320 seryl-tRNA synthetase 99.6 9.4E-16 2E-20 112.3 3.9 74 1-76 240-314 (502)
31 COG0172 SerS Seryl-tRNA synthe 99.5 3.7E-14 8E-19 102.3 5.7 74 1-76 181-254 (429)
32 TIGR00415 serS_MJ seryl-tRNA s 99.5 6.5E-14 1.4E-18 102.8 6.1 75 2-76 231-336 (520)
33 CHL00201 syh histidine-tRNA sy 99.3 5.1E-12 1.1E-16 90.9 6.5 75 2-76 26-103 (430)
34 cd00773 HisRS-like_core Class 99.2 4.6E-11 1E-15 80.7 6.5 73 2-76 10-83 (261)
35 cd00774 GlyRS-like_core Glycyl 99.1 4.3E-11 9.3E-16 81.1 2.6 66 1-76 39-108 (254)
36 PRK00037 hisS histidyl-tRNA sy 99.0 1.4E-09 3.1E-14 77.2 6.3 66 2-67 26-94 (412)
37 TIGR00442 hisS histidyl-tRNA s 98.8 2.1E-08 4.6E-13 71.1 6.5 74 2-76 22-98 (397)
38 TIGR00443 hisZ_biosyn_reg ATP 98.6 1.6E-07 3.5E-12 65.2 5.5 71 2-75 16-87 (314)
39 PRK09537 pylS pyrolysyl-tRNA s 98.5 3.1E-07 6.6E-12 66.6 5.3 70 2-75 211-282 (417)
40 cd00768 class_II_aaRS-like_cor 98.4 8.3E-07 1.8E-11 56.9 5.7 68 2-75 7-75 (211)
41 KOG2509 Seryl-tRNA synthetase 98.4 4.8E-07 1E-11 65.8 4.5 76 1-76 192-267 (455)
42 PLN02530 histidine-tRNA ligase 98.4 9.3E-07 2E-11 64.8 5.9 72 2-76 92-165 (487)
43 PRK12420 histidyl-tRNA synthet 98.2 4.8E-06 1E-10 59.9 5.9 66 2-67 26-93 (423)
44 TIGR02367 PylS pyrrolysyl-tRNA 98.0 2.5E-05 5.3E-10 57.3 6.0 62 2-66 247-310 (453)
45 TIGR00389 glyS_dimeric glycyl- 97.8 1.9E-05 4.1E-10 59.2 3.9 42 2-43 45-87 (551)
46 KOG4163 Prolyl-tRNA synthetase 97.6 4.4E-05 9.5E-10 56.1 2.6 75 2-76 106-186 (551)
47 COG0124 HisS Histidyl-tRNA syn 97.4 0.00054 1.2E-08 50.1 6.4 65 2-66 26-93 (429)
48 PRK12292 hisZ ATP phosphoribos 97.3 0.00072 1.6E-08 48.4 5.9 64 2-67 25-91 (391)
49 PF13393 tRNA-synt_His: Histid 97.1 0.0015 3.3E-08 44.8 5.6 63 3-67 19-82 (311)
50 PRK12293 hisZ ATP phosphoribos 96.8 0.0041 9E-08 43.0 5.8 60 2-66 27-87 (281)
51 PRK12421 ATP phosphoribosyltra 96.7 0.0081 1.8E-07 43.2 6.6 64 2-67 29-95 (392)
52 PRK12295 hisZ ATP phosphoribos 96.7 0.0076 1.7E-07 43.2 6.4 61 3-65 13-75 (373)
53 COG0423 GRS1 Glycyl-tRNA synth 96.1 0.0041 8.9E-08 46.7 2.3 33 11-43 59-91 (558)
54 PLN02972 Histidyl-tRNA synthet 95.9 0.022 4.7E-07 44.5 5.6 62 2-66 349-412 (763)
55 PRK12294 hisZ ATP phosphoribos 95.8 0.029 6.3E-07 38.8 5.4 62 3-66 16-79 (272)
56 PLN02734 glycyl-tRNA synthetas 95.7 0.0097 2.1E-07 45.9 2.8 41 2-42 117-158 (684)
57 COG3705 HisZ ATP phosphoribosy 95.2 0.053 1.1E-06 39.5 5.1 65 3-69 26-92 (390)
58 PRK07080 hypothetical protein; 94.1 0.069 1.5E-06 37.9 3.4 60 7-66 56-144 (317)
59 PRK14894 glycyl-tRNA synthetas 93.1 0.081 1.8E-06 39.9 2.5 34 10-43 58-91 (539)
60 PRK09350 poxB regulator PoxA; 92.4 0.16 3.6E-06 35.4 3.2 23 2-24 13-35 (306)
61 cd00669 Asp_Lys_Asn_RS_core As 92.3 0.24 5.2E-06 34.1 3.9 45 2-54 9-55 (269)
62 PF00152 tRNA-synt_2: tRNA syn 91.6 0.71 1.5E-05 32.3 5.6 55 2-64 30-89 (335)
63 PRK02983 lysS lysyl-tRNA synth 90.4 0.37 8.1E-06 39.2 3.7 24 2-25 778-801 (1094)
64 PRK06462 asparagine synthetase 87.4 1.4 3E-05 31.2 4.5 23 2-24 38-60 (335)
65 TIGR00458 aspS_arch aspartyl-t 86.7 1.1 2.5E-05 32.7 3.9 23 2-24 141-163 (428)
66 PLN02850 aspartate-tRNA ligase 86.6 1.2 2.5E-05 33.7 4.0 24 2-25 233-256 (530)
67 cd00777 AspRS_core Asp tRNA sy 86.6 0.59 1.3E-05 32.3 2.3 25 2-26 9-33 (280)
68 cd00775 LysRS_core Lys_tRNA sy 85.9 0.72 1.6E-05 32.6 2.4 24 2-25 16-39 (329)
69 PRK05159 aspC aspartyl-tRNA sy 85.7 4 8.7E-05 29.9 6.3 22 2-23 144-165 (437)
70 COG1190 LysU Lysyl-tRNA synthe 85.6 0.6 1.3E-05 35.1 2.0 23 2-24 188-210 (502)
71 PRK03932 asnC asparaginyl-tRNA 85.3 2.3 5E-05 31.3 4.9 23 2-24 141-163 (450)
72 PTZ00417 lysine-tRNA ligase; P 84.9 0.7 1.5E-05 35.3 2.1 23 2-24 261-283 (585)
73 PTZ00401 aspartyl-tRNA synthet 83.9 1.3 2.9E-05 33.6 3.2 24 2-25 221-244 (550)
74 KOG1885 Lysyl-tRNA synthetase 83.8 0.65 1.4E-05 35.0 1.5 24 1-24 232-255 (560)
75 TIGR00462 genX lysyl-tRNA synt 83.5 1 2.2E-05 31.5 2.3 23 2-24 9-31 (304)
76 TIGR00499 lysS_bact lysyl-tRNA 83.2 0.93 2E-05 33.9 2.1 23 2-24 180-202 (496)
77 KOG2298 Glycyl-tRNA synthetase 83.0 0.77 1.7E-05 34.8 1.6 34 9-42 62-95 (599)
78 PRK12445 lysyl-tRNA synthetase 82.8 0.98 2.1E-05 33.9 2.1 23 2-24 192-214 (505)
79 PRK00484 lysS lysyl-tRNA synth 81.7 1.2 2.7E-05 33.1 2.3 23 2-24 180-202 (491)
80 cd00776 AsxRS_core Asx tRNA sy 80.7 1.4 3.1E-05 30.9 2.2 23 2-24 32-54 (322)
81 COG0173 AspS Aspartyl-tRNA syn 80.4 1.6 3.4E-05 33.5 2.5 23 2-24 149-171 (585)
82 TIGR00459 aspS_bact aspartyl-t 80.4 1.4 3.1E-05 33.7 2.3 23 2-24 146-168 (583)
83 PLN02502 lysyl-tRNA synthetase 80.0 1.5 3.2E-05 33.4 2.2 23 2-24 237-259 (553)
84 PRK00476 aspS aspartyl-tRNA sy 78.9 1.7 3.7E-05 33.2 2.3 23 2-24 149-171 (588)
85 PTZ00385 lysyl-tRNA synthetase 77.8 1.8 4E-05 33.6 2.2 23 2-24 241-263 (659)
86 TIGR00457 asnS asparaginyl-tRN 77.6 1.8 3.9E-05 32.0 2.0 24 2-25 144-167 (453)
87 cd00496 PheRS_alpha_core Pheny 77.5 17 0.00038 23.9 6.6 62 2-65 8-75 (218)
88 PRK12820 bifunctional aspartyl 77.3 2.1 4.5E-05 33.6 2.4 23 2-24 164-186 (706)
89 COG0017 AsnS Aspartyl/asparagi 76.6 4.4 9.5E-05 30.1 3.8 25 2-26 142-166 (435)
90 PF06491 Disulph_isomer: Disul 76.1 1.5 3.2E-05 27.7 1.1 30 2-31 7-36 (136)
91 PLN02603 asparaginyl-tRNA synt 75.7 2.9 6.2E-05 32.0 2.7 24 2-25 234-257 (565)
92 PLN02221 asparaginyl-tRNA synt 74.9 3 6.5E-05 31.9 2.6 24 2-25 179-202 (572)
93 COG2269 Truncated, possibly in 74.7 6.4 0.00014 28.1 4.0 63 2-66 24-87 (322)
94 PLN02532 asparagine-tRNA synth 74.2 3.2 6.9E-05 32.2 2.6 24 2-25 243-266 (633)
95 PRK00488 pheS phenylalanyl-tRN 71.7 17 0.00038 26.1 5.7 62 2-66 115-181 (339)
96 TIGR00468 pheS phenylalanyl-tR 68.4 20 0.00043 24.9 5.4 63 2-67 79-146 (294)
97 PLN02903 aminoacyl-tRNA ligase 67.7 4.2 9.2E-05 31.7 2.1 24 2-25 211-235 (652)
98 cd00769 PheRS_beta_core Phenyl 65.1 8.5 0.00018 24.8 2.9 61 2-65 7-69 (198)
99 PTZ00425 asparagine-tRNA ligas 64.2 6.2 0.00014 30.4 2.4 23 3-25 224-246 (586)
100 KOG1936 Histidyl-tRNA syntheta 60.5 25 0.00054 26.7 4.8 66 2-72 82-152 (518)
101 KOG0555 Asparaginyl-tRNA synth 58.3 6.6 0.00014 29.4 1.6 42 2-43 251-294 (545)
102 COG4829 CatC1 Muconolactone de 53.6 20 0.00044 21.2 2.8 38 24-73 41-78 (98)
103 PF01409 tRNA-synt_2d: tRNA sy 51.5 60 0.0013 22.1 5.3 63 2-64 24-95 (247)
104 PRK04172 pheS phenylalanyl-tRN 49.9 14 0.0003 27.5 2.1 23 2-24 240-262 (489)
105 PF08868 YugN: YugN-like famil 48.7 29 0.00062 21.8 3.1 36 3-53 16-53 (132)
106 KOG2411 Aspartyl-tRNA syntheta 43.1 16 0.00034 28.2 1.5 21 4-24 188-209 (628)
107 KOG0556 Aspartyl-tRNA syntheta 36.9 31 0.00067 26.1 2.2 35 2-44 236-270 (533)
108 PF10882 bPH_5: Bacterial PH d 35.9 84 0.0018 17.7 3.9 25 43-67 75-99 (100)
109 PF14305 ATPgrasp_TupA: TupA-l 34.4 44 0.00095 22.5 2.5 45 4-59 24-68 (239)
110 PRK09616 pheT phenylalanyl-tRN 34.3 1.6E+02 0.0035 22.3 5.7 65 2-69 366-434 (552)
111 PLN02265 probable phenylalanyl 30.7 45 0.00097 25.6 2.3 29 2-30 404-433 (597)
112 PF14044 NETI: NETI protein 27.2 54 0.0012 17.7 1.6 15 3-17 12-26 (57)
113 PRK00754 signal recognition pa 27.1 68 0.0015 18.9 2.2 30 4-33 40-70 (95)
114 PF06888 Put_Phosphatase: Puta 27.0 35 0.00076 23.2 1.1 32 3-34 102-133 (234)
115 COG2024 Phenylalanyl-tRNA synt 26.2 25 0.00053 26.4 0.2 25 2-26 54-78 (536)
116 COG0072 PheT Phenylalanyl-tRNA 25.5 80 0.0017 24.6 2.9 30 3-32 359-388 (650)
117 PLN00017 photosystem I reactio 24.7 30 0.00066 20.3 0.4 17 24-40 18-34 (90)
118 PF13590 DUF4136: Domain of un 23.9 82 0.0018 18.8 2.3 15 2-16 42-56 (151)
119 TIGR00472 pheT_bact phenylalan 22.9 1E+02 0.0022 24.4 3.1 29 3-31 499-527 (798)
120 TIGR00471 pheT_arch phenylalan 22.7 80 0.0017 24.0 2.4 62 2-66 369-433 (551)
121 PF08002 DUF1697: Protein of u 22.7 76 0.0017 19.6 1.9 15 4-18 24-38 (137)
122 PF12252 SidE: Dot/Icm substra 21.6 87 0.0019 26.6 2.4 25 6-34 42-66 (1439)
123 PRK06253 O-phosphoseryl-tRNA s 21.5 44 0.00096 25.6 0.8 30 2-31 54-84 (529)
124 TIGR02328 conserved hypothetic 20.8 77 0.0017 19.6 1.6 13 3-15 56-68 (120)
125 cd00494 HMBS Hydroxymethylbila 20.3 40 0.00087 23.8 0.3 9 68-76 74-82 (292)
126 TIGR00470 sepS O-phosphoseryl- 20.0 49 0.0011 25.4 0.8 28 2-29 54-82 (533)
No 1
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.5e-29 Score=182.20 Aligned_cols=75 Identities=67% Similarity=1.258 Sum_probs=72.8
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
.|||.+..++||+||.||.|.++.||++||||.+|.++||+++...++|.|+|||||+||.+|+++.+|||+||+
T Consensus 200 ~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~~LKPMNCPgHcLmf~~r~rS~reLPl 274 (560)
T KOG1637|consen 200 DFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYRELPL 274 (560)
T ss_pred HHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhhccCccCCCccccccccCCccHhhCCc
Confidence 689999999999999999999999999999999999999999877788999999999999999999999999996
No 2
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.6e-26 Score=168.41 Aligned_cols=76 Identities=49% Similarity=0.970 Sum_probs=72.8
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|++..+...||++|.||+|.+.++|+.||||++|+++||.+..++++|+|+|||||+|+++|++..+|||+||+
T Consensus 227 e~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~ 302 (589)
T COG0441 227 EDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPL 302 (589)
T ss_pred HHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceeccch
Confidence 3789999999999999999999999999999999999999999877789999999999999999999999999996
No 3
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.91 E-value=4.7e-25 Score=158.53 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=72.6
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++++++++.+.||++|.||+|.+.++|+.||||+.|+++||.+ ++++++|+|+|||||.|+.++++.++||||||+
T Consensus 54 ~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~syrdLPl 130 (439)
T PRK12325 54 ENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPL 130 (439)
T ss_pred HHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhchhhch
Confidence 4789999999999999999999999999999999999999999 566789999999999999999999999999996
No 4
>PLN02837 threonine-tRNA ligase
Probab=99.91 E-value=6.6e-25 Score=162.97 Aligned_cols=76 Identities=42% Similarity=0.784 Sum_probs=71.8
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++.+.+.||++|.||+|++.++|++||||++|+++||++ +.+++.|+|+||+||.|+.+|++.++||||||+
T Consensus 254 ~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPl 330 (614)
T PLN02837 254 EDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPI 330 (614)
T ss_pred HHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCChhHCCH
Confidence 3689999999999999999999999999999999999999998 556789999999999999999999999999996
No 5
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6e-25 Score=160.20 Aligned_cols=76 Identities=28% Similarity=0.472 Sum_probs=73.2
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++++|++|++.|.+||.+|.|.+.+||+.||||+.|+++||++ ++++++|+|+||||+.++.++++.++||||||+
T Consensus 54 ~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl 130 (500)
T COG0442 54 ENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPL 130 (500)
T ss_pred HHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhhhhCCc
Confidence 3789999999999999999999999999999999999999999 577899999999999999999999999999997
No 6
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.90 E-value=2.5e-24 Score=158.37 Aligned_cols=76 Identities=36% Similarity=0.848 Sum_probs=72.9
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++++++++.+.||++|.||+|.+.+||+.||||++|+++||.++.++++|+|+||+||+|+.+|++..+||||||+
T Consensus 175 ~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPl 250 (545)
T PRK14799 175 IAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPI 250 (545)
T ss_pred HHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChhhCCH
Confidence 3689999999999999999999999999999999999999999877889999999999999999999999999996
No 7
>PLN02908 threonyl-tRNA synthetase
Probab=99.89 E-value=6.6e-24 Score=159.11 Aligned_cols=76 Identities=79% Similarity=1.498 Sum_probs=73.0
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++++++++.+.||++|.||+|.+.++|+.||||++|+++||.++.++++++|+||+||+|+.+|++..+|||+||+
T Consensus 328 ~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPl 403 (686)
T PLN02908 328 MDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPL 403 (686)
T ss_pred HHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCH
Confidence 3689999999999999999999999999999999999999999877889999999999999999999999999996
No 8
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.89 E-value=1.8e-23 Score=144.23 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=70.3
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++++.+.||++|.+|.|.+.++|++||||+.|+++||+++. ++|+|+||+|+.++.+++++++||||||+
T Consensus 59 ~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~~--~~~~L~pt~e~~~~~l~~~~~~s~~~LPl 132 (297)
T cd00770 59 INFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVEG--EDLYLIATAEVPLAALHRDEILEEEELPL 132 (297)
T ss_pred HHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEecC--CCEEEeecCCHHHHHHHhcccCCHhhCCc
Confidence 378999999999999999999999999999999999999999843 68999999999999999999999999996
No 9
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.88 E-value=6.8e-23 Score=139.08 Aligned_cols=76 Identities=20% Similarity=0.315 Sum_probs=69.6
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhh-hhhCCcccccccceEEe-ec----CceEEEcCCChHHHHHHHhCcCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLW-ETSGHAANYKENMFLID-IE----KQEFGLKPMNCPGHCLMFDHKVRSYRVL 74 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw-~~SG~~~~~~~~mf~~~-~~----~~~~~L~P~~c~~~~~~~~~~~~SYk~L 74 (76)
++++++++.+.||++|.+|.|.+.++| ++||||++|+++||++. ++ +++|+|+||+|+.++.++++.+.|||||
T Consensus 39 ~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~L 118 (261)
T cd00778 39 QKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDL 118 (261)
T ss_pred HHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHhhccchhhc
Confidence 378999999999999999999999998 57999999999999984 33 2479999999999999999999999999
Q ss_pred CC
Q 035006 75 SL 76 (76)
Q Consensus 75 Pl 76 (76)
|+
T Consensus 119 Pl 120 (261)
T cd00778 119 PL 120 (261)
T ss_pred CH
Confidence 96
No 10
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.86 E-value=3e-22 Score=149.00 Aligned_cols=76 Identities=24% Similarity=0.411 Sum_probs=72.7
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++++.+.||++|.||+|.+.++|+.||||++|+++||.++.++++|+|+||+|++|+.+|++.++||||||+
T Consensus 234 ~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPl 309 (613)
T PRK03991 234 EDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISYKNLPL 309 (613)
T ss_pred HHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCCCceEEEecCCCHHHHHHHhCCcCchhhCCh
Confidence 3789999999999999999999999999999999999999999766789999999999999999999999999996
No 11
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.86 E-value=1.2e-22 Score=129.89 Aligned_cols=75 Identities=36% Similarity=0.734 Sum_probs=67.6
Q ss_pred hHHHHHHH-HcCCeEeeCCcccchhhhhhhCCcccccccceEEe-ecCceEEEcCCChHHHHHHHhCcCCC-CCCCCC
Q 035006 2 EFIKKQYW-DRGYQEVISPNMYNMKLWETSGHAANYKENMFLID-IEKQEFGLKPMNCPGHCLMFDHKVRS-YRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~-~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~-~~~~~~~L~P~~c~~~~~~~~~~~~S-Yk~LPl 76 (76)
+++++++. +.||++|.+|.|.+.++|++||||+.|.++||.+. .++++|+|+||+|++++.++++...| ||+||+
T Consensus 7 ~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~ 84 (173)
T PF00587_consen 7 RFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYRDLPL 84 (173)
T ss_dssp HHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGGGSSE
T ss_pred HHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccccCCe
Confidence 68999999 99999999999999999999999999999999995 34567999999999999999999999 999996
No 12
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.85 E-value=1e-21 Score=144.71 Aligned_cols=76 Identities=24% Similarity=0.452 Sum_probs=72.5
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++++++++.+.||++|.+|.|.+.++|+.||||+.|+++||++ ++.+++|+|+||+|+.++.++++.+.||||||+
T Consensus 54 ~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~ 130 (565)
T PRK09194 54 ENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPL 130 (565)
T ss_pred HHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCCCEEEECCCChHHHHHHHHhhhhhcccCCe
Confidence 3789999999999999999999999999999999999999999 566789999999999999999999999999996
No 13
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.85 E-value=1.1e-21 Score=145.99 Aligned_cols=76 Identities=47% Similarity=0.923 Sum_probs=72.1
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++++++.+.+.||++|.||+|.+.++|++||||++|+++||.++.++++|+|+||+|++|+.+|++.++|||+||+
T Consensus 281 ~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~ 356 (639)
T PRK12444 281 EAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPI 356 (639)
T ss_pred HHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCc
Confidence 3689999999999999999999999999999999999999966777889999999999999999999999999996
No 14
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.85 E-value=1.1e-21 Score=144.98 Aligned_cols=76 Identities=24% Similarity=0.432 Sum_probs=72.6
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++++|.+.||++|.+|.|.+.++|+.||||+.|+++||++ ++.+++|+|+||||+.++.++++.+.||||||+
T Consensus 54 ~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~syr~LPl 130 (568)
T TIGR00409 54 ENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKSYKQLPL 130 (568)
T ss_pred HHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhhccccCe
Confidence 3789999999999999999999999999999999999999999 567889999999999999999999999999996
No 15
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.6e-21 Score=137.81 Aligned_cols=75 Identities=19% Similarity=0.391 Sum_probs=70.9
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCC-CCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVR-SYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~-SYk~LPl 76 (76)
++++.+|+..|+++|.+|++.+++||++||||+..+.+||++ |+.|++|||.|||||.++++.++.+. ||||||+
T Consensus 60 ~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pThEE~iT~lmat~~~lsykqlPi 136 (457)
T KOG2324|consen 60 RLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEEDITALMATYIPLSYKQLPI 136 (457)
T ss_pred HHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCCCEeccCCchHHHHHHHHHhcCccccccCcE
Confidence 578899999999999999999999999999999999999999 68899999999999999999888665 9999996
No 16
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.84 E-value=3.5e-21 Score=132.71 Aligned_cols=76 Identities=58% Similarity=1.086 Sum_probs=71.9
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++++++.+.+.||++|.||.|.+.++|++||||+.|.++||+++..+++++|+||+|+.|+.++++.++|||+||+
T Consensus 37 ~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~l~LRP~~~~~~~~~~~~~~~s~~~LPl 112 (298)
T cd00771 37 EDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPL 112 (298)
T ss_pred HHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEeccCCceEEEcccCCHHHHHHHHhhccchhhCCe
Confidence 3688999999999999999999999999999999999999999766679999999999999999999999999996
No 17
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.83 E-value=5.1e-21 Score=137.28 Aligned_cols=74 Identities=18% Similarity=0.364 Sum_probs=70.0
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++++.+.||++|.+|.|++.++|++||||++|+++||.++ +++++|+||+|+.++.++++++.||||||+
T Consensus 180 ~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~--~~~~~L~pTsE~~~~~~~~~~i~s~~~LPl 253 (418)
T TIGR00414 180 INFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE--DTDLYLIPTAEVPLTNLHRNEILEEEELPI 253 (418)
T ss_pred HHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--CCCEEEEeCCcHHHHHHHhCcCCChHhCCe
Confidence 37899999999999999999999999999999999999999984 357999999999999999999999999996
No 18
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.83 E-value=4.3e-21 Score=137.90 Aligned_cols=74 Identities=20% Similarity=0.363 Sum_probs=69.6
Q ss_pred ChHHHHHHH-HcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYW-DRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~-~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++++. +.||++|.+|.|++.++|++||||++|+++||+++ +++++|+||+|+.++.++++++.||||||+
T Consensus 177 ~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~--~~~~~L~pTsE~~l~~l~~~~~~s~~dLPl 251 (425)
T PRK05431 177 IQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE--DDDLYLIPTAEVPLTNLHRDEILDEEELPL 251 (425)
T ss_pred HHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec--CCCEEEEeCCcHHHHHHHhcccCCHHhCCe
Confidence 368888888 99999999999999999999999999999999985 468999999999999999999999999996
No 19
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.83 E-value=9.3e-21 Score=128.26 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=71.3
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++++++++.+.||++|.+|.|.+.++|+.||||+.|+++||.+ +.++++++|+||+|+.++.++++.+.||||||+
T Consensus 38 ~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~~~LPl 114 (255)
T cd00779 38 ENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPL 114 (255)
T ss_pred HHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCCeEEEecCCcHHHHHHHHhccccHhhCCH
Confidence 3688999999999999999999999999999999999999999 455678999999999999999999999999995
No 20
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.82 E-value=1.7e-20 Score=127.69 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=69.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCccccc-ccceEEe-ecC----ceEEEcCCChHHHHHHHhCcCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYK-ENMFLID-IEK----QEFGLKPMNCPGHCLMFDHKVRSYRVLS 75 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~-~~mf~~~-~~~----~~~~L~P~~c~~~~~~~~~~~~SYk~LP 75 (76)
+++++++.+.||++|.+|.|.+.++|++||+|+++. ++||.+. .++ ++++|+||+|+.++.++++.++||||||
T Consensus 40 ~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LP 119 (264)
T cd00772 40 NVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLP 119 (264)
T ss_pred HHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhhhhhhhccC
Confidence 678999999999999999999999999999999966 7899984 343 7899999999999999999999999999
Q ss_pred C
Q 035006 76 L 76 (76)
Q Consensus 76 l 76 (76)
+
T Consensus 120 l 120 (264)
T cd00772 120 Q 120 (264)
T ss_pred e
Confidence 6
No 21
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.81 E-value=3.8e-20 Score=136.07 Aligned_cols=75 Identities=49% Similarity=0.976 Sum_probs=71.9
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++.+.+.||++|.||.|.+.++|+.||||+.|+++||.+ +.++++++|+||+||.|+.++++..+||++||+
T Consensus 214 ~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~ 289 (575)
T PRK12305 214 DYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPL 289 (575)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCChhhCCH
Confidence 688999999999999999999999999999999999999999 677889999999999999999999999999996
No 22
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.80 E-value=5.7e-20 Score=133.50 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=69.7
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhh-hhCCcccccccceEEe-ec----CceEEEcCCChHHHHHHHhCcCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWE-TSGHAANYKENMFLID-IE----KQEFGLKPMNCPGHCLMFDHKVRSYRVL 74 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~-~SG~~~~~~~~mf~~~-~~----~~~~~L~P~~c~~~~~~~~~~~~SYk~L 74 (76)
++++++++.+.||++|.+|+|.+.++|+ .||||+.|+++||.+. .+ +++++|+||+|+.|+.++++.++|||||
T Consensus 51 ~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdL 130 (477)
T PRK08661 51 QKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDL 130 (477)
T ss_pred HHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcchhhc
Confidence 3689999999999999999999999996 4999999999999984 33 4689999999999999999999999999
Q ss_pred CC
Q 035006 75 SL 76 (76)
Q Consensus 75 Pl 76 (76)
|+
T Consensus 131 Pl 132 (477)
T PRK08661 131 PL 132 (477)
T ss_pred CH
Confidence 96
No 23
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.80 E-value=1e-19 Score=133.46 Aligned_cols=76 Identities=51% Similarity=0.994 Sum_probs=71.9
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++++++.+.+.||++|.||.|.+.++|+.||||+.++++||++ +++|+.++|+||+|+.|+.+|.+..+|||+||+
T Consensus 207 ~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~ 283 (563)
T TIGR00418 207 EDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPL 283 (563)
T ss_pred HHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCChHHCCc
Confidence 3688999999999999999999999999999999999999998 566789999999999999999999999999996
No 24
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.79 E-value=1.1e-19 Score=131.99 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=69.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhh-hCCcccccccceEEee-c----CceEEEcCCChHHHHHHHhCcCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAANYKENMFLIDI-E----KQEFGLKPMNCPGHCLMFDHKVRSYRVLS 75 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~~~~~mf~~~~-~----~~~~~L~P~~c~~~~~~~~~~~~SYk~LP 75 (76)
+++++++.+.||++|.+|+|.+.++|++ +|||+.|+++||.+.. + +++|+|+||+|+.|+.+|++.++||||||
T Consensus 46 ~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLP 125 (472)
T TIGR00408 46 KILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLP 125 (472)
T ss_pred HHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcC
Confidence 6789999999999999999999999997 4699999999999953 3 37899999999999999999999999999
Q ss_pred C
Q 035006 76 L 76 (76)
Q Consensus 76 l 76 (76)
+
T Consensus 126 l 126 (472)
T TIGR00408 126 L 126 (472)
T ss_pred H
Confidence 6
No 25
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.77 E-value=3.5e-19 Score=130.56 Aligned_cols=75 Identities=13% Similarity=0.291 Sum_probs=67.1
Q ss_pred hHHHHH-HHHcCCeEeeCCcccchhhhhhhCCcccccccceEEee------------------------------cCceE
Q 035006 2 EFIKKQ-YWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDI------------------------------EKQEF 50 (76)
Q Consensus 2 ~~ir~e-~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~------------------------------~~~~~ 50 (76)
+|++++ ..+.||++|.+|.|.+.++|++||||++|.++||.+.. .++.|
T Consensus 231 ~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~y 310 (517)
T PRK00960 231 KLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGY 310 (517)
T ss_pred HHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccccccccccccc
Confidence 678876 46779999999999999999999999999999998731 13468
Q ss_pred EEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 51 GLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 51 ~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+|+||+||+|..+|+++++||+|||+
T Consensus 311 vLrPa~Cp~~y~~~~~~ils~rdLPL 336 (517)
T PRK00960 311 VLAPAQCEPFYQFFQGETVDVDELPI 336 (517)
T ss_pred cccccCcHHHHHHHhCCcCChhhCCH
Confidence 99999999999999999999999996
No 26
>PLN02678 seryl-tRNA synthetase
Probab=99.76 E-value=3.7e-19 Score=128.73 Aligned_cols=76 Identities=14% Similarity=0.212 Sum_probs=70.2
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++.+.+.||++|.+|.|++.++|+.||||++|+++||+++..+++++|.||+|+..+.++.+++.||++||+
T Consensus 181 ~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~~eLPl 256 (448)
T PLN02678 181 INFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDPKELPI 256 (448)
T ss_pred HHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCHHhCCc
Confidence 4789999999999999999999999999999999999999999644557889999999999999999999999997
No 27
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.76 E-value=6.2e-20 Score=132.84 Aligned_cols=60 Identities=18% Similarity=0.367 Sum_probs=51.0
Q ss_pred ChHHHHHHHH--cCCeEeeCCcccchhhhhhhCCcccccccceEEe-------ecC------------------ceEEEc
Q 035006 1 MEFIKKQYWD--RGYQEVISPNMYNMKLWETSGHAANYKENMFLID-------IEK------------------QEFGLK 53 (76)
Q Consensus 1 ~~~ir~e~~~--~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~-------~~~------------------~~~~L~ 53 (76)
++++|+.+.+ .||+||.||+|.+.++|+.||||++|.|+||... .++ +.+.++
T Consensus 45 ~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~m~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (456)
T PRK04173 45 KRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDPLVECKKCKKRYRADHLIEELGIDAEGLSNEELKELIREN 124 (456)
T ss_pred HHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCceeEeCCCCCEeechhhhHHHhhhhccccHHHHHHHHHHh
Confidence 3688998887 7999999999999999999999999999999873 111 128999
Q ss_pred CCChHHH
Q 035006 54 PMNCPGH 60 (76)
Q Consensus 54 P~~c~~~ 60 (76)
||+||.|
T Consensus 125 ~m~cp~~ 131 (456)
T PRK04173 125 DIKCPEC 131 (456)
T ss_pred CCCCCCC
Confidence 9999944
No 28
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.76 E-value=9.6e-19 Score=129.75 Aligned_cols=75 Identities=47% Similarity=0.954 Sum_probs=71.4
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++.+.+.||++|.||.+.+.++|..||||+.|+++||.+ +.+++.|+|+||+||.|+.++++..+||++||+
T Consensus 278 ~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~ 353 (638)
T PRK00413 278 RYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPL 353 (638)
T ss_pred HHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCc
Confidence 678899999999999999999999999999999999999997 677789999999999999999999999999996
No 29
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.73 E-value=7.6e-18 Score=111.08 Aligned_cols=75 Identities=27% Similarity=0.565 Sum_probs=70.3
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe-ec----CceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID-IE----KQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~-~~----~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++++.+.||++|.||.|.+.++|+.+||++.+.++||.+. .+ +++++|+|++|+.++.++++...||++||+
T Consensus 10 ~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~ 89 (235)
T cd00670 10 RFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILSYRALPL 89 (235)
T ss_pred HHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCccchhcCe
Confidence 6788999999999999999999999999999999999999995 33 578999999999999999999999999996
No 30
>PLN02320 seryl-tRNA synthetase
Probab=99.59 E-value=9.4e-16 Score=112.30 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=63.6
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccc-cceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKE-NMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~-~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++.+.+.||++|.+|.|++.++|++|||++.+.+ .+|.+ ++++++|.||+|-....++.+++.||+|||+
T Consensus 240 i~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~i--e~ed~~Li~TaE~Pl~~~~~~~ils~~dLPl 314 (502)
T PLN02320 240 VNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSI--DGSDQCLIGTAEIPVGGIHMDSILLESALPL 314 (502)
T ss_pred HHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEE--CCCceEEeecccccccccccccccCHhhCCc
Confidence 47899999999999999999999999999999998876 67766 4568999777776666677789999999996
No 31
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3.7e-14 Score=102.32 Aligned_cols=74 Identities=15% Similarity=0.312 Sum_probs=69.7
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+.+.+.+.||+++.+|.|++.+.+.++|+|++|.++||++... +|+|.||+|...+.++++++.+-.+||+
T Consensus 181 ~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~--~~~LipTaEvpl~~l~~~Eil~~~~LP~ 254 (429)
T COG0172 181 IQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDP--DLYLIPTAEVPLTNLHRDEILDEEDLPI 254 (429)
T ss_pred HHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCC--CEEEEecchhhhHHhhcccccccccCCe
Confidence 3789999999999999999999999999999999999999999533 8999999999999999999999999996
No 32
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=99.48 E-value=6.5e-14 Score=102.78 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=66.0
Q ss_pred hHHHHHH-HHcCCeEeeCCcccchhhhhhhCCcccccccceEEee------------------------------cCceE
Q 035006 2 EFIKKQY-WDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDI------------------------------EKQEF 50 (76)
Q Consensus 2 ~~ir~e~-~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~------------------------------~~~~~ 50 (76)
+|+++.+ .+.||+++.+|.|.+.+.|.++||++.|.++||.+.. ++..|
T Consensus 231 ~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~ 310 (520)
T TIGR00415 231 EFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGY 310 (520)
T ss_pred HHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccccccccCCce
Confidence 5776655 5569999999999999999999999999999998731 22379
Q ss_pred EEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 51 GLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 51 ~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+|.||+|..+..++++++.|++|||+
T Consensus 311 vL~PTSE~ply~~~a~~Ils~~dLPl 336 (520)
T TIGR00415 311 VIAPAQCEPFYQFFEGEVIDAEDKPI 336 (520)
T ss_pred EEeCccHHHHHHHHhccccChhhCCe
Confidence 99999999999999999999999995
No 33
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.31 E-value=5.1e-12 Score=90.94 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=66.4
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhh-C-CcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETS-G-HAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~S-G-~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+.+++...+.||++|.||++-..++|..+ | +|+.+.++||++ +.+|+.++|+|+.|+.++.+|.....|++++|+
T Consensus 26 ~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~~iaR~~~~~~~~~~~~p~ 103 (430)
T CHL00201 26 DKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTAGIVRAFIENKMDYHSNLQ 103 (430)
T ss_pred HHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcHHHHHHHHHccccccCCCe
Confidence 45778889999999999999999999875 5 999999999998 566789999999999999998777778888884
No 34
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.20 E-value=4.6e-11 Score=80.70 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=64.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+.+++.+.+.||++|.||.+.+.++|..+| ++...++||++ +.+|+.++|+|+.++.++.++.+...+ +++|+
T Consensus 10 ~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~-~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~-~~~p~ 83 (261)
T cd00773 10 DTLREVFERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLS-LPLPL 83 (261)
T ss_pred HHHHHHHHHcCCEEeeccceeeHHHhcccc-cccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCcc-CCCCe
Confidence 567888999999999999999999999888 88889999998 566889999999999999998887776 66773
No 35
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.10 E-value=4.3e-11 Score=81.09 Aligned_cols=66 Identities=20% Similarity=0.183 Sum_probs=53.5
Q ss_pred ChHHHHHHHHcC--CeEeeCCcccchhhhhhh-CCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCC-CCCC
Q 035006 1 MEFIKKQYWDRG--YQEVISPNMYNMKLWETS-GHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYR-VLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G--~~ev~~P~l~~~~lw~~S-G~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk-~LPl 76 (76)
++++++++.+.| |++|.||+|.+.+++... |+++ .++++++|+||+||.|+..+++...||+ +||+
T Consensus 39 ~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d----------~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~ 108 (254)
T cd00774 39 KSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVE----------SGGNLGYLRPETAQGIFVNFKNLLEFNRRKLPF 108 (254)
T ss_pred HHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccC----------CCCcccccCCcccchHHHHHHHHHHHhCCCCCc
Confidence 368899999996 999999999999665542 4442 2345799999999999999999888775 9996
No 36
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=98.98 E-value=1.4e-09 Score=77.24 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=57.0
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhh-CCcc-cccccceEE-eecCceEEEcCCChHHHHHHHhCc
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETS-GHAA-NYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHK 67 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~S-G~~~-~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~ 67 (76)
+.+++.+.+.||++|.||.+.+.++|..+ |++. .+.++||++ +..|+.++|+|+.++.++.++.+.
T Consensus 26 ~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~~ar~~~~~ 94 (412)
T PRK00037 26 DTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGTAPVVRAVIEH 94 (412)
T ss_pred HHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCcHHHHHHHHhC
Confidence 56888999999999999999999999775 8884 568899998 456889999999999999887653
No 37
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.77 E-value=2.1e-08 Score=71.06 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=60.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhC--CcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSG--HAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG--~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+.+++.+.+.||++|.||.+.+.++|..++ +.+.++++||++ +.+|+.++|+|+.++.++.++.+.. +++++|+
T Consensus 22 ~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~-~~~~~p~ 98 (397)
T TIGR00442 22 ETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTAPVARAVIENK-LLLPKPF 98 (397)
T ss_pred HHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcHHHHHHHHhcc-cccCCCe
Confidence 567888999999999999999999998763 344577899998 5678899999999999998876543 3566663
No 38
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.55 E-value=1.6e-07 Score=65.17 Aligned_cols=71 Identities=23% Similarity=0.402 Sum_probs=57.3
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLS 75 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LP 75 (76)
+.+++...+.||++|.||++.+.+++..+++ ...++||++ +.+|+.++|+|..++.+..++.+... ++++|
T Consensus 16 ~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~--~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~~-~~~~p 87 (314)
T TIGR00443 16 RQLQDVFRSWGYQEIITPTLEYLDTLSAGGG--ILNEDLFKLFDSLGRVLGLRPDMTTPIARAVSTRLR-DRPLP 87 (314)
T ss_pred HHHHHHHHHcCCeeccCcchhhHHHhcccCC--cchhceEEEECCCCCEEeecCcCcHHHHHHHHHhcc-cCCCC
Confidence 4567788999999999999999999998877 478899998 56788999999877778887765443 34444
No 39
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=98.47 E-value=3.1e-07 Score=66.64 Aligned_cols=70 Identities=26% Similarity=0.389 Sum_probs=56.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcc--cccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAA--NYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLS 75 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~--~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LP 75 (76)
+.||+.+...||+||.||.|.+.+.++..|++. .+.+.||.++ ++.+|+|+.+|.....++.. .++.++|
T Consensus 211 ~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~id---eel~LRpsLtPsLlr~la~n-~k~~~~P 282 (417)
T PRK09537 211 RDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD---KNFCLRPMLAPGLYNYLRKL-DRILPDP 282 (417)
T ss_pred HHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeC---CceEehhhhHHHHHHHHHhh-hhcccCC
Confidence 568899999999999999999999999999874 4667888763 36999999999988766532 3445556
No 40
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=98.41 E-value=8.3e-07 Score=56.85 Aligned_cols=68 Identities=24% Similarity=0.439 Sum_probs=54.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLS 75 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LP 75 (76)
+.+++.+.+.||+||.+|.+.+.+.+...|.++ +.+..+ ...++.++|+|+.+|.+..++++.. +++|
T Consensus 7 ~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~---~~~~ 75 (211)
T cd00768 7 QKLRRFMAELGFQEVETPIVEREPLLEKAGHEP---KDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI---RKLP 75 (211)
T ss_pred HHHHHHHHHcCCEEeEcceecHHHHHHHcCccH---hheeeeecCCCCEEEECCCCcHHHHHHHHhhc---ccCC
Confidence 568889999999999999999999998888764 223333 3456789999999999999887654 5555
No 41
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=4.8e-07 Score=65.77 Aligned_cols=76 Identities=11% Similarity=0.173 Sum_probs=69.2
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|..+.+.+.||..+.+|.|+++++.++.|..+.+.+++|.+-.++++.+|..|+|-.+..+..++...-.+||+
T Consensus 192 i~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~~~lPi 267 (455)
T KOG2509|consen 192 INYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEEDQLPI 267 (455)
T ss_pred HHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCccceeEeeccchhhhhhcccccccccCce
Confidence 3678888999999999999999999999999999999999887545568899999999999999999999899996
No 42
>PLN02530 histidine-tRNA ligase
Probab=98.37 E-value=9.3e-07 Score=64.83 Aligned_cols=72 Identities=19% Similarity=0.320 Sum_probs=58.8
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhh-CCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETS-GHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~S-G~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+.+++...+.||++|.||.+-..+++..+ | +...++||++ +.+|+.++|+|...+.++.++.....+. ++|+
T Consensus 92 ~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g--~~~~~~~y~f~D~~g~~l~LRpD~T~~iaR~~~~~~~~~-~~P~ 165 (487)
T PLN02530 92 DHFREVSRLFGFEEVDAPVLESEELYIRKAG--EEITDQLYNFEDKGGRRVALRPELTPSLARLVLQKGKSL-SLPL 165 (487)
T ss_pred HHHHHHHHHcCCEeccccccchHHHhccccC--cccccceEEEECCCCCEEecCCCCcHHHHHHHHhccccc-CCCe
Confidence 56788899999999999999999999764 4 3467789998 5678899999999999999887654443 4553
No 43
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=98.18 E-value=4.8e-06 Score=59.88 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=55.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhh-hCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCc
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHK 67 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~ 67 (76)
+-+++.+.+.||++|.||.+-..++|.. +|..+...++||++ +.+|+.++|+|...+.++-++...
T Consensus 26 ~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~iaR~va~~ 93 (423)
T PRK12420 26 RALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIPFAKVVAMN 93 (423)
T ss_pred HHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHHHHHHHHhC
Confidence 4567788999999999999999999965 36666667789998 567889999999999998877653
No 44
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=97.96 E-value=2.5e-05 Score=57.29 Aligned_cols=62 Identities=27% Similarity=0.471 Sum_probs=51.8
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCccc--ccccceEEeecCceEEEcCCChHHHHHHHhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAAN--YKENMFLIDIEKQEFGLKPMNCPGHCLMFDH 66 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~--~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~ 66 (76)
+.+|+.+...||+||.+|.|.+.+.++..|+++. ..++||.++ +..+|+|+.+|....++.+
T Consensus 247 d~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e---e~lvLRPdLTPsLaR~La~ 310 (453)
T TIGR02367 247 RDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD---KNFCLRPMLAPNLYNYLRK 310 (453)
T ss_pred HHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec---CceEecccCHHHHHHHHHH
Confidence 5689999999999999999999999998888743 566888763 3689999999998876643
No 45
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=97.85 E-value=1.9e-05 Score=59.16 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=37.0
Q ss_pred hHHHHHH-HHcCCeEeeCCcccchhhhhhhCCcccccccceEE
Q 035006 2 EFIKKQY-WDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI 43 (76)
Q Consensus 2 ~~ir~e~-~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~ 43 (76)
+++|+.+ ...|+.||.+|+|.+.++|+.||||++|.|-|...
T Consensus 45 ~~wr~~~v~~~~~~ei~~~~i~~~~v~~aSGh~~~F~D~mv~~ 87 (551)
T TIGR00389 45 NAWRKFFIKNERVLEIDTPIITPEEVLKASGHVDNFTDWMVDC 87 (551)
T ss_pred HHHHHHHHhcCCceEeeccccCCHHHHHhcCCccccCCceeec
Confidence 5677777 46689999999999999999999999999988763
No 46
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=4.4e-05 Score=56.11 Aligned_cols=75 Identities=12% Similarity=0.235 Sum_probs=62.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhh-hCCcccccccceEEeec-----CceEEEcCCChHHHHHHHhCcCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAANYKENMFLIDIE-----KQEFGLKPMNCPGHCLMFDHKVRSYRVLS 75 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~~~~~mf~~~~~-----~~~~~L~P~~c~~~~~~~~~~~~SYk~LP 75 (76)
.+...+..+.|-+...-|.+++....++ --|-+.|.+++=-+-+. ++-.+++||+|--+.-.|+..++||||||
T Consensus 106 ~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLP 185 (551)
T KOG4163|consen 106 DWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLP 185 (551)
T ss_pred HHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEEEEecCCcccccceeeccCccceecHHHHHHHHhhccCc
Confidence 4567788999999999999999988864 45778899888666332 34589999999999999999999999999
Q ss_pred C
Q 035006 76 L 76 (76)
Q Consensus 76 l 76 (76)
|
T Consensus 186 l 186 (551)
T KOG4163|consen 186 L 186 (551)
T ss_pred h
Confidence 7
No 47
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00054 Score=50.14 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=51.4
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhh-hCCccc-ccccceEE-eecCceEEEcCCChHHHHHHHhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAAN-YKENMFLI-DIEKQEFGLKPMNCPGHCLMFDH 66 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~-~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~ 66 (76)
+.+++...++||.+|.||++=..++..+ +|--.. -..+||.+ |++|+.+.|+|---.+..-.+..
T Consensus 26 ~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~e 93 (429)
T COG0124 26 STIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAE 93 (429)
T ss_pred HHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHh
Confidence 4678888999999999999999999975 453322 45789999 56789999999777776665553
No 48
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.33 E-value=0.00072 Score=48.38 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=51.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhh-hCCcccccccceEE-ee-cCceEEEcCCChHHHHHHHhCc
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAANYKENMFLI-DI-EKQEFGLKPMNCPGHCLMFDHK 67 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~~~~~mf~~-~~-~~~~~~L~P~~c~~~~~~~~~~ 67 (76)
+-+++...+.||++|.||.+-..++... +|.. ..++||++ +. +|+.++|+|--.+.+.-++.+.
T Consensus 25 ~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~--~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~ 91 (391)
T PRK12292 25 RRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAI--LDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATR 91 (391)
T ss_pred HHHHHHHHHcCCceeeCcchhhHHHHhccCCcc--chhhhEEEeecCCCCEEEECCCCcHHHHHHHHHh
Confidence 3467778999999999999999999854 4433 45689998 56 6889999999999999877643
No 49
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.12 E-value=0.0015 Score=44.83 Aligned_cols=63 Identities=16% Similarity=0.278 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCc
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHK 67 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~ 67 (76)
-+++...+.||++|.||.+-..+++...+..+ .+++|++ +..|+.++|+|--=..+..++...
T Consensus 19 ~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~--~~~~~~~~D~~G~~l~LR~D~T~~iaR~~a~~ 82 (311)
T PF13393_consen 19 KLREVFERHGYEEIETPLLEYYELFLDKSGED--SDNMYRFLDRSGRVLALRPDLTVPIARYVARN 82 (311)
T ss_dssp HHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT--GGCSEEEECTTSSEEEE-SSSHHHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEECCeEeecHHhhhccccc--hhhhEEEEecCCcEeccCCCCcHHHHHHHHHh
Confidence 35677899999999999999999988765343 3389998 567889999998888888766543
No 50
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.84 E-value=0.0041 Score=42.97 Aligned_cols=60 Identities=8% Similarity=0.233 Sum_probs=46.0
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDH 66 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~ 66 (76)
+-+++...+.||++|.||.+-..++... .-.++||++ +.+|+.++|+|--=+.+..++.+
T Consensus 27 ~~l~~vf~~~Gy~~I~tP~lE~~e~~~~-----~~~~~~y~~~D~~g~~l~LRpD~T~~iaR~~a~ 87 (281)
T PRK12293 27 NVASEILYENGFEEIVTPFFSYHQHQSI-----ADEKELIRFSDEKNHQISLRADSTLDVVRIVTK 87 (281)
T ss_pred HHHHHHHHHcCCeEeeccceeehhhhcc-----cchhceEEEECCCCCEEEECCcCCHHHHHHHHH
Confidence 3466778999999999999977766522 234689998 56778999999877777776654
No 51
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.70 E-value=0.0081 Score=43.22 Aligned_cols=64 Identities=22% Similarity=0.290 Sum_probs=49.8
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhh-hCCcccccccceEE-ee-cCceEEEcCCChHHHHHHHhCc
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAANYKENMFLI-DI-EKQEFGLKPMNCPGHCLMFDHK 67 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~~~~~mf~~-~~-~~~~~~L~P~~c~~~~~~~~~~ 67 (76)
+.+++...+.||++|.||.+-..++... +|... ...||++ +. +|+.++|+|--=+.+.-++.+.
T Consensus 29 ~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~--~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~ 95 (392)
T PRK12421 29 RRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDL--KLQTFKLIDQLSGRLMGVRADITPQVARIDAHL 95 (392)
T ss_pred HHHHHHHHHcCCEEeeCcchhhHHHHhccCCccc--hhceEEEEcCCCCcEEEECCcCCHHHHHHHHhh
Confidence 4577788999999999999999998864 45443 3469998 44 4788999998888888776544
No 52
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.69 E-value=0.0076 Score=43.23 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCeEeeCCcccchhhhh-hhCCcccccccceEE-eecCceEEEcCCChHHHHHHHh
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMKLWE-TSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFD 65 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~lw~-~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~ 65 (76)
-+++...+.||.+|.||.+-..++.. .+|.- -.++||++ +..|+.++|+|--=+.+..++.
T Consensus 13 ~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~ 75 (373)
T PRK12295 13 ALLASFEAAGAVRVDPPILQPAEPFLDLSGED--IRRRIFVTSDENGEELCLRPDFTIPVCRRHI 75 (373)
T ss_pred HHHHHHHHcCCEEeeCCccccHHHhhhccCch--hhcceEEEECCCCCEEeeCCCCcHHHHHHHH
Confidence 45667899999999999999998764 45533 34579998 5678899999988887776553
No 53
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.0041 Score=46.73 Aligned_cols=33 Identities=18% Similarity=0.477 Sum_probs=30.3
Q ss_pred cCCeEeeCCcccchhhhhhhCCcccccccceEE
Q 035006 11 RGYQEVISPNMYNMKLWETSGHAANYKENMFLI 43 (76)
Q Consensus 11 ~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~ 43 (76)
.|..+|-+|.|.+.+.|+.|||.++|.|-|...
T Consensus 59 e~~~eIdtpii~p~~V~kASGHvd~FsDplv~c 91 (558)
T COG0423 59 EDVVEIDTPIILPEEVWKASGHVDKFSDPLVEC 91 (558)
T ss_pred CCeEEecccccCcHHHhhhcCcccccccceeec
Confidence 689999999999999999999999999977653
No 54
>PLN02972 Histidyl-tRNA synthetase
Probab=95.93 E-value=0.022 Score=44.52 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=48.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhh-hCCcccccccceEE-eecCceEEEcCCChHHHHHHHhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDH 66 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~ 66 (76)
+-+++...+.||.+|.||.+-..+++.. +|.- .++||++ +.+|+.++|+|--=+.+..++..
T Consensus 349 ~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged---~k~mY~f~D~gGr~LaLRPDlTvPiAR~vA~ 412 (763)
T PLN02972 349 SIITSVFKRHGATALDTPVFELRETLMGKYGED---SKLIYDLADQGGELCSLRYDLTVPFARYVAM 412 (763)
T ss_pred HHHHHHHHHcCCEEccCCcccchHHhhcccCcc---hhheEEEECCCCCEEEeCCCChHHHHHHHHh
Confidence 3567788999999999999999998864 2321 2479998 56788999999888877776653
No 55
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=95.82 E-value=0.029 Score=38.81 Aligned_cols=62 Identities=10% Similarity=-0.047 Sum_probs=45.8
Q ss_pred HHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccce-EEe-ecCceEEEcCCChHHHHHHHhC
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMF-LID-IEKQEFGLKPMNCPGHCLMFDH 66 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf-~~~-~~~~~~~L~P~~c~~~~~~~~~ 66 (76)
-+++...+.||++|.||.+-..++...+|... .+.++ .+. .+|+.++|+|--=+.+.-++++
T Consensus 16 ~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~--~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~ 79 (272)
T PRK12294 16 AFLKYFNKADYELVDFSVIEKLDWKQLNHEDL--QQMGERSFWQHEHQIYALRNDFTDQLLRYYSM 79 (272)
T ss_pred HHHHHHHHcCCeEeeCCcchhHHhhhccccch--hhhheeeeecCCCCEEEEcCCCCHHHHHHHHh
Confidence 45667899999999999999988875444322 23333 343 4689999999888888887764
No 56
>PLN02734 glycyl-tRNA synthetase
Probab=95.69 E-value=0.0097 Score=45.93 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=33.4
Q ss_pred hHHHHHH-HHcCCeEeeCCcccchhhhhhhCCcccccccceE
Q 035006 2 EFIKKQY-WDRGYQEVISPNMYNMKLWETSGHAANYKENMFL 42 (76)
Q Consensus 2 ~~ir~e~-~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~ 42 (76)
+++|+.+ ...+.-||.+|+|.+...|+.|||.++|.|=|-+
T Consensus 117 ~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~mv~ 158 (684)
T PLN02734 117 AFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLMVK 158 (684)
T ss_pred HHHHHHHhccCCeeEeeccccCCHhHeeecCCcccccceeeE
Confidence 3455544 3447779999999999999999999999987765
No 57
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=95.22 E-value=0.053 Score=39.48 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCeEeeCCcccchhhhhhh-CCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCC
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMKLWETS-GHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVR 69 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~lw~~S-G~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~ 69 (76)
-+++...+.||+.|.||+|.+.+..... |+- ....+|++ +..++.++|+|---+.++.++.+...
T Consensus 26 ~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~--l~~~~f~l~d~~g~~l~LRpD~T~pVaR~~~~~~~ 92 (390)
T COG3705 26 QLLALFRAWGYERVETPTLEPADPLLDGAGED--LRRRLFKLEDETGGRLGLRPDFTIPVARIHATLLA 92 (390)
T ss_pred HHHHHHHHhCCccccccccchhhhhhhccchh--hhhhheEEecCCCCeEEecccccHHHHHHHHHhcC
Confidence 4667789999999999999999998665 432 34578998 45678899999777777766655443
No 58
>PRK07080 hypothetical protein; Validated
Probab=94.08 E-value=0.069 Score=37.93 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=48.7
Q ss_pred HHHHcC----CeEeeCCcccchhhhhhhCCcccccccceEEe-e------------------------cCceEEEcCCCh
Q 035006 7 QYWDRG----YQEVISPNMYNMKLWETSGHAANYKENMFLID-I------------------------EKQEFGLKPMNC 57 (76)
Q Consensus 7 e~~~~G----~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~-~------------------------~~~~~~L~P~~c 57 (76)
...+.| ++++.-|-+.+.+.|++||++..|-.-|+.+. . ...+++|.|..|
T Consensus 56 ~i~~lg~~~~~e~~~FPpl~~~~~~ek~~Y~ksFP~l~~~V~~~~g~~~e~~~ll~~~~~~~~~~~~l~~~~~vL~pAaC 135 (317)
T PRK07080 56 LITRLGADQGAEVLRFPPVMSRAEFERSGYLKSFPQLAGTVHSFCGNEAEHRRLLACLDRGEDWTESQKPTDVVLTPAAC 135 (317)
T ss_pred HHHHhccccCCceeeCCCCCCHHHHHhcChhhhCcccceeecCCCCCCHHHHHHHHHHHhcCchhhhcCCCcceeccccc
Confidence 345556 99999999999999999999999988777642 1 123699999999
Q ss_pred HHHHHHHhC
Q 035006 58 PGHCLMFDH 66 (76)
Q Consensus 58 ~~~~~~~~~ 66 (76)
.....++.+
T Consensus 136 yP~Yp~l~~ 144 (317)
T PRK07080 136 YPVYPVLAR 144 (317)
T ss_pred ccchhhhcc
Confidence 999887764
No 59
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=93.06 E-value=0.081 Score=39.93 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=29.9
Q ss_pred HcCCeEeeCCcccchhhhhhhCCcccccccceEE
Q 035006 10 DRGYQEVISPNMYNMKLWETSGHAANYKENMFLI 43 (76)
Q Consensus 10 ~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~ 43 (76)
+.+..+|-+|+|.+...|+.|||.++|.|-|-..
T Consensus 58 ~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~C 91 (539)
T PRK14894 58 RDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDC 91 (539)
T ss_pred cCCEEEeeccccCCHhHeeeccCCCCCCCceeEC
Confidence 4577899999999999999999999999877653
No 60
>PRK09350 poxB regulator PoxA; Provisional
Probab=92.40 E-value=0.16 Score=35.44 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.3
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+|+.+.+.||.||.||.|...
T Consensus 13 ~~ir~~f~~~gf~EV~TP~l~~~ 35 (306)
T PRK09350 13 AEIRRFFADRGVLEVETPILSQA 35 (306)
T ss_pred HHHHHHHHHCCCEEEECCeEecc
Confidence 56888999999999999999764
No 61
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=92.32 E-value=0.24 Score=34.08 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=31.8
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEee--cCceEEEcC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDI--EKQEFGLKP 54 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~--~~~~~~L~P 54 (76)
+.+|+.+.+.||.||.||.|.... +| -+.+.|.+.- .|+++.|.-
T Consensus 9 ~~ir~~f~~~gf~ev~tP~l~~~~----~~----~~~~~f~~~~~~~g~~~~L~~ 55 (269)
T cd00669 9 KAIRDFMDDRGFLEVETPMLQKIT----GG----AGARPFLVKYNALGLDYYLRI 55 (269)
T ss_pred HHHHHHHHHCCCEEEECCEEeccC----Cc----cccceEEeeecCCCCcEEeec
Confidence 568999999999999999998662 21 1125677742 366777873
No 62
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=91.57 E-value=0.71 Score=32.30 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=34.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe-----ecCceEEEcCCChHHHHHHH
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID-----IEKQEFGLKPMNCPGHCLMF 64 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~-----~~~~~~~L~P~~c~~~~~~~ 64 (76)
+.||+.+.+.||.||.||.|.... ..| +.+.|.++ .-++..+|...-+-..-.+.
T Consensus 30 ~~ir~ff~~~~f~Ev~tP~l~~~~---~~~-----~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll 89 (335)
T PF00152_consen 30 QAIREFFDKRGFIEVDTPILTSST---CEG-----GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLL 89 (335)
T ss_dssp HHHHHHHHHTT-EEE---SEESSS---SSS-----SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHH
T ss_pred HHHHHHHHhCCceEEcCceeeccc---cCc-----cccccccccchhhhcccceecCcChHHHHhhhc
Confidence 568999999999999999998874 222 44667776 34566778776666554443
No 63
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=90.42 E-value=0.37 Score=39.16 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.0
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
+.||+.+.+.||.||.||.|...+
T Consensus 778 ~~iR~fl~~~gFlEVeTPiL~~~~ 801 (1094)
T PRK02983 778 RAVRETLVARGFLEVETPILQQVH 801 (1094)
T ss_pred HHHHHHHHHCCCEEEeCCEeeccC
Confidence 568999999999999999998543
No 64
>PRK06462 asparagine synthetase A; Reviewed
Probab=87.41 E-value=1.4 Score=31.23 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+|+.+.+.||.||.||.|...
T Consensus 38 ~~iR~ff~~~~f~EV~TP~l~~~ 60 (335)
T PRK06462 38 RYTREFLDGRGFVEVLPPIISPS 60 (335)
T ss_pred HHHHHHHHHCCCEEEeCCeEecC
Confidence 56899999999999999999875
No 65
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=86.72 E-value=1.1 Score=32.70 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+|+.+.+.||.||.||.|...
T Consensus 141 ~~iR~ff~~~gf~EV~TP~L~~~ 163 (428)
T TIGR00458 141 ESVREFLAEEGFIEVHTPKLVAS 163 (428)
T ss_pred HHHHHHHHHCCCEEEeCCceecC
Confidence 56899999999999999999753
No 66
>PLN02850 aspartate-tRNA ligase
Probab=86.65 E-value=1.2 Score=33.70 Aligned_cols=24 Identities=13% Similarity=0.421 Sum_probs=20.8
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
+.+|+.+.+.||.||.||.|....
T Consensus 233 ~~~R~fl~~~gF~EV~TP~L~~~~ 256 (530)
T PLN02850 233 NLFREFLLSKGFVEIHTPKLIAGA 256 (530)
T ss_pred HHHHHHHHHCCcEEEeCCccccCC
Confidence 578999999999999999996643
No 67
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=86.56 E-value=0.59 Score=32.32 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKL 26 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~l 26 (76)
+.+|+-+.+.||.||.||.|.....
T Consensus 9 ~~iR~f~~~~gfiEV~TP~L~~~~~ 33 (280)
T cd00777 9 KAIRNFLDEQGFVEIETPILTKSTP 33 (280)
T ss_pred HHHHHHHHHCCCEEEeCCeeecCCC
Confidence 5689999999999999999986543
No 68
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=85.85 E-value=0.72 Score=32.57 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
+.+|+.+.+.||.||.||.|.+..
T Consensus 16 ~~iR~ff~~~gf~EV~TP~L~~~~ 39 (329)
T cd00775 16 SYIRKFLDDRGFLEVETPMLQPIA 39 (329)
T ss_pred HHHHHHHHHCCCEEEECCccccCC
Confidence 468999999999999999998664
No 69
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=85.66 E-value=4 Score=29.92 Aligned_cols=22 Identities=14% Similarity=0.575 Sum_probs=19.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccc
Q 035006 2 EFIKKQYWDRGYQEVISPNMYN 23 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~ 23 (76)
+.+|+.+.+.||.||.||.|..
T Consensus 144 ~~iR~ff~~~gf~EV~TP~L~~ 165 (437)
T PRK05159 144 RAFREFLYENGFTEIFTPKIVA 165 (437)
T ss_pred HHHHHHHHHCCCEEEeCCcccc
Confidence 5689999999999999999964
No 70
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=85.64 E-value=0.6 Score=35.13 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.9
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.||+.+...||.||.||.|.+-
T Consensus 188 ~~iR~fl~~~gFlEVETP~lq~i 210 (502)
T COG1190 188 RAIREFLDDRGFLEVETPMLQPI 210 (502)
T ss_pred HHHHHHHHHCCCeEecccccccc
Confidence 57899999999999999999875
No 71
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=85.26 E-value=2.3 Score=31.33 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.8
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+|+.+.+.||.||.||.|...
T Consensus 141 ~~iR~f~~~~gf~EV~TP~L~~~ 163 (450)
T PRK03932 141 QAIHEFFNENGFVWVDTPIITAS 163 (450)
T ss_pred HHHHHHHHHCCCEEecCCceecc
Confidence 56899999999999999999875
No 72
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=84.94 E-value=0.7 Score=35.33 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.||+.+.+.||.||.||.|.+.
T Consensus 261 ~aiR~Ff~~rGFlEVeTPiL~~~ 283 (585)
T PTZ00417 261 NYLRNFLNDRGFIEVETPTMNLV 283 (585)
T ss_pred HHHHHHHHHCCeEEEeCCeeecc
Confidence 57899999999999999999875
No 73
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=83.93 E-value=1.3 Score=33.61 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
+.+|+.+.+.||.||.||.|....
T Consensus 221 ~~~R~fl~~~gFiEV~TP~L~~~~ 244 (550)
T PTZ00401 221 QYFRQFLIDSDFCEIHSPKIINAP 244 (550)
T ss_pred HHHHHHHHHCCCEEEeCCccccCC
Confidence 578999999999999999998754
No 74
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=83.79 E-value=0.65 Score=35.01 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=21.1
Q ss_pred ChHHHHHHHHcCCeEeeCCcccch
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+||..++..||-||.||.|.-.
T Consensus 232 I~~iRkfld~rgFlEVETPmmn~i 255 (560)
T KOG1885|consen 232 ISYIRKFLDSRGFLEVETPMMNMI 255 (560)
T ss_pred HHHHHHHhhhcCceEecchhhccc
Confidence 468999999999999999999654
No 75
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=83.53 E-value=1 Score=31.48 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.9
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+|+.+.+.||.||.||.|...
T Consensus 9 ~~ir~~f~~~gF~EV~TP~l~~~ 31 (304)
T TIGR00462 9 AAIRAFFAERGVLEVETPLLSPA 31 (304)
T ss_pred HHHHHHHHHCCCEEEECCeEecC
Confidence 56899999999999999999876
No 76
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=83.24 E-value=0.93 Score=33.86 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.8
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+|+.+.+.||.||.||.|.+.
T Consensus 180 ~~iR~fl~~~gF~EVeTP~L~~~ 202 (496)
T TIGR00499 180 KAIRRFLDDRGFIEVETPMLQVI 202 (496)
T ss_pred HHHHHHHHHCcCEEEeCCeeecC
Confidence 56899999999999999999865
No 77
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.03 E-value=0.77 Score=34.77 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHcCCeEeeCCcccchhhhhhhCCcccccccceE
Q 035006 9 WDRGYQEVISPNMYNMKLWETSGHAANYKENMFL 42 (76)
Q Consensus 9 ~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~ 42 (76)
..-+--||-.|.|.+.+..+.|||-++|.|=|.+
T Consensus 62 lEE~MlEvdct~ltP~~VlkaSGHVdkF~D~mvk 95 (599)
T KOG2298|consen 62 LEEDMLEVDCTMLTPEPVLKASGHVDKFADWMVK 95 (599)
T ss_pred hhhcceeeccCcCCcHHHhhcccchhhhhHHHhc
Confidence 3447889999999999999999999999998865
No 78
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=82.76 E-value=0.98 Score=33.87 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.||+.+.+.||.||.||.|...
T Consensus 192 ~~iR~f~~~~gFiEVeTPiL~~~ 214 (505)
T PRK12445 192 AAIRQFMVARGFMEVETPMMQVI 214 (505)
T ss_pred HHHHHHHHHCCCEEeeCCeeEec
Confidence 57899999999999999999763
No 79
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=81.67 E-value=1.2 Score=33.14 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+|+.+.+.||.||.||.|.+.
T Consensus 180 ~~iR~f~~~~gF~EVeTPiL~~~ 202 (491)
T PRK00484 180 SAIRRFLDNRGFLEVETPMLQPI 202 (491)
T ss_pred HHHHHHHHHCCCEEEECCceecc
Confidence 56899999999999999999855
No 80
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=80.67 E-value=1.4 Score=30.93 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.4
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+|+.+.+.||.||.||.|...
T Consensus 32 ~~ir~~f~~~gf~eV~TP~l~~~ 54 (322)
T cd00776 32 RAFREFLRENGFTEVHTPKITST 54 (322)
T ss_pred HHHHHHHHHCCCEEeeCCceecC
Confidence 46888999999999999999873
No 81
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.44 E-value=1.6 Score=33.49 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
..||+.|+..||.||.||.|.++
T Consensus 149 ~~iR~~ld~~gF~EiETPiLtkS 171 (585)
T COG0173 149 KAIRNFLDDQGFLEIETPILTKS 171 (585)
T ss_pred HHHHHHHhhcCCeEeecCccccC
Confidence 46899999999999999999875
No 82
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=80.42 E-value=1.4 Score=33.69 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=20.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+|+.+.+.||.||.||.|.+.
T Consensus 146 ~~iR~ff~~~gFiEVeTP~L~~s 168 (583)
T TIGR00459 146 KAVRNFLDQQGFLEIETPMLTKS 168 (583)
T ss_pred HHHHHHHHHCCCEEEECCeeccC
Confidence 56899999999999999999863
No 83
>PLN02502 lysyl-tRNA synthetase
Probab=79.98 E-value=1.5 Score=33.35 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.||+.+.+.||.||.||.|...
T Consensus 237 ~~iR~fl~~~gF~EVeTPiL~~~ 259 (553)
T PLN02502 237 SYIRRFLDDRGFLEVETPMLNMI 259 (553)
T ss_pred HHHHHHHHHCCCEEEECCeeecc
Confidence 57899999999999999999864
No 84
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=78.89 E-value=1.7 Score=33.25 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+|+.+.+.||.||.||.|.+.
T Consensus 149 ~~iR~ff~~~gFiEV~TP~L~~s 171 (588)
T PRK00476 149 SAIRNFLDDNGFLEIETPILTKS 171 (588)
T ss_pred HHHHHHHHHCCCEEEECCeeecC
Confidence 46899999999999999999865
No 85
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=77.85 E-value=1.8 Score=33.63 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.4
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.||+.+.+.||.||.||.|...
T Consensus 241 ~aiR~ff~~~gFlEVeTPiL~~~ 263 (659)
T PTZ00385 241 QALRDYFNERNFVEVETPVLHTV 263 (659)
T ss_pred HHHHHHHHHCCCEEeeCCEeecc
Confidence 56899999999999999999754
No 86
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=77.55 E-value=1.8 Score=31.99 Aligned_cols=24 Identities=17% Similarity=0.345 Sum_probs=21.0
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
+.+|+.+.+.||.||.||.|....
T Consensus 144 ~~~r~~~~~~gf~eV~TP~l~~~~ 167 (453)
T TIGR00457 144 QAIHRYFQENGFTWVSPPILTSND 167 (453)
T ss_pred HHHHHHHHHCCCEEecCCeEeecC
Confidence 468899999999999999998654
No 87
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=77.48 E-value=17 Score=23.88 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=38.0
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh-hhhhhCCcccccc----cceEEeecCc-eEEEcCCChHHHHHHHh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK-LWETSGHAANYKE----NMFLIDIEKQ-EFGLKPMNCPGHCLMFD 65 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~-lw~~SG~~~~~~~----~mf~~~~~~~-~~~L~P~~c~~~~~~~~ 65 (76)
+-+|+.+...||+|+.|+.+.+.+ .+..-|-.+.-.. +.+.+. +. .=+|+|+-=|.....++
T Consensus 8 ~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~--NP~~~~LR~sLlp~LL~~l~ 75 (218)
T cd00496 8 EEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYIN--DPARLLLRTHTSAVQARALA 75 (218)
T ss_pred HHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEEC--CCceEEEeccCcHHHHHHHH
Confidence 457889999999999999998883 4443332211000 223332 11 35678877777776544
No 88
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=77.31 E-value=2.1 Score=33.57 Aligned_cols=23 Identities=17% Similarity=0.305 Sum_probs=20.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.+|+.+.+.||.||.||.|.+.
T Consensus 164 ~~iR~fl~~~gFiEVeTPiL~~s 186 (706)
T PRK12820 164 KCARDFLDSRGFLEIETPILTKS 186 (706)
T ss_pred HHHHHHHHHCCCEEEeCCccccC
Confidence 56899999999999999999864
No 89
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=76.63 E-value=4.4 Score=30.14 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=21.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKL 26 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~l 26 (76)
..+++.+.+.||.+|.||.|...+.
T Consensus 142 ~a~~eff~~~gF~eV~tP~i~~~~~ 166 (435)
T COG0017 142 RAIREFFYENGFTEVHTPIITASAT 166 (435)
T ss_pred HHHHHHHHhCCcEEecCceEeccCC
Confidence 4578889999999999999987754
No 90
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=76.12 E-value=1.5 Score=27.73 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=19.3
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSG 31 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG 31 (76)
.-+|+|+.+.||+|+.||-=+...+=.+.|
T Consensus 7 ~pmR~ELt~~Gf~eL~T~e~Vd~~~~~~~G 36 (136)
T PF06491_consen 7 QPMREELTRAGFEELTTAEEVDEALKNKEG 36 (136)
T ss_dssp HHHHHHHHTTT-EE--SHHHHHHHHHH--S
T ss_pred HHHHHHHHHcCccccCCHHHHHHHHhCCCC
Confidence 347999999999999999877665543333
No 91
>PLN02603 asparaginyl-tRNA synthetase
Probab=75.71 E-value=2.9 Score=31.98 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.8
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
..+|+.+.+.||.||.||.|...+
T Consensus 234 ~air~ff~~~gF~eV~TPiLt~s~ 257 (565)
T PLN02603 234 YATHKFFQENGFVWVSSPIITASD 257 (565)
T ss_pred HHHHHHHHHCCCEEEECCeecccC
Confidence 457889999999999999998764
No 92
>PLN02221 asparaginyl-tRNA synthetase
Probab=74.88 E-value=3 Score=31.91 Aligned_cols=24 Identities=4% Similarity=0.080 Sum_probs=21.0
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
+.+|+.+.+.||.||.||.|...+
T Consensus 179 ~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 179 FATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHCCCEEEeCCeecccc
Confidence 468899999999999999997664
No 93
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=74.71 E-value=6.4 Score=28.12 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=40.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe-ecCceEEEcCCChHHHHHHHhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID-IEKQEFGLKPMNCPGHCLMFDH 66 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~-~~~~~~~L~P~~c~~~~~~~~~ 66 (76)
+=||+.....|+.||.||.|...- ..--|...|..+.+... .++..++|.+.-|-+.--+...
T Consensus 24 ~~iR~FF~erg~lEVeTp~Ls~a~--vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAa 87 (322)
T COG2269 24 AAIRRFFAERGVLEVETPALSVAP--VTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAA 87 (322)
T ss_pred HHHHHHHHHcCceEecchHhhcCC--CCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHc
Confidence 447888899999999999997652 23345566665555432 2345677877655555444443
No 94
>PLN02532 asparagine-tRNA synthetase
Probab=74.24 E-value=3.2 Score=32.21 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
..+|+.+.+.||.||.||.|...+
T Consensus 243 ~aiR~ff~~~GFiEV~TPiLT~s~ 266 (633)
T PLN02532 243 HATHTFFQDHGFLYVQVPIITTTD 266 (633)
T ss_pred HHHHHHHHHCCCEEeeCCeecccC
Confidence 468889999999999999996654
No 95
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=71.74 E-value=17 Score=26.14 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=37.9
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhh-----hhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLW-----ETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDH 66 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw-----~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~ 66 (76)
+-|++.+...||+++..|.|.+..-= ....|-.--..+.|.+ ++..+|+...=|..+....+
T Consensus 115 ~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI---~~~~lLRThTSp~qir~L~~ 181 (339)
T PRK00488 115 EEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI---DDGLLLRTHTSPVQIRTMEK 181 (339)
T ss_pred HHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE---cCCceeeccCcHHHHHHHHh
Confidence 45888999999999999999764321 1122211111134444 23467787777777766554
No 96
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=68.40 E-value=20 Score=24.94 Aligned_cols=63 Identities=11% Similarity=0.197 Sum_probs=39.9
Q ss_pred hHHHHHHHHcCCeEeeCCcccch-hhhhhhCCcc-ccc-c--cceEEeecCceEEEcCCChHHHHHHHhCc
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM-KLWETSGHAA-NYK-E--NMFLIDIEKQEFGLKPMNCPGHCLMFDHK 67 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~-~lw~~SG~~~-~~~-~--~mf~~~~~~~~~~L~P~~c~~~~~~~~~~ 67 (76)
+-|++.+...||+|+.+|.+.+. .-...-+-.+ +.. + +.|.+. +.-+|+++.=|.....++..
T Consensus 79 ~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~---d~~vLRtsl~p~ll~~l~~N 146 (294)
T TIGR00468 79 DEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK---DRLLLRTHTTAVQLRTMEEN 146 (294)
T ss_pred HHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec---CCcceecccHHHHHHHHHhc
Confidence 45788899999999999999877 2233222111 111 1 345553 35678998888888766543
No 97
>PLN02903 aminoacyl-tRNA ligase
Probab=67.66 E-value=4.2 Score=31.65 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=20.3
Q ss_pred hHHHHHHHH-cCCeEeeCCcccchh
Q 035006 2 EFIKKQYWD-RGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~-~G~~ev~~P~l~~~~ 25 (76)
+.+|+.+.+ .||.||.||.|.+..
T Consensus 211 ~~iR~fl~~~~gFiEVeTPiL~~st 235 (652)
T PLN02903 211 KLIRRYLEDVHGFVEIETPILSRST 235 (652)
T ss_pred HHHHHHHHhcCCeEEEECCeeccCC
Confidence 468888886 899999999998654
No 98
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=65.06 E-value=8.5 Score=24.84 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=37.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe--ecCceEEEcCCChHHHHHHHh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID--IEKQEFGLKPMNCPGHCLMFD 65 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~--~~~~~~~L~P~~c~~~~~~~~ 65 (76)
+-+|+.+...||+|+.+..+.+.+....-| ++ .++..++. ..++.=+|+++-=|.....++
T Consensus 7 ~~ir~~L~~~G~~E~~tys~~~~~~~~~~~-~~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~ 69 (198)
T cd00769 7 RKLRRLLAGLGFQEVITYSLTSPEEAELFD-GG--LDEAVELSNPLSEEYSVLRTSLLPGLLDALA 69 (198)
T ss_pred HHHHHHHHHCCCceeecccCCCHHHHHhcc-CC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999996655432 11 11334442 122233456655556665443
No 99
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=64.20 E-value=6.2 Score=30.37 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCeEeeCCcccchh
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
.+|+.+.+.||.+|.||.|...+
T Consensus 224 a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 224 ATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHCCCEEeeCCeecccC
Confidence 57888899999999999996654
No 100
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.53 E-value=25 Score=26.66 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=46.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCccccccc---ceEEe-ecCceEEEcCCChHHHHH-HHhCcCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKEN---MFLID-IEKQEFGLKPMNCPGHCL-MFDHKVRSYR 72 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~---mf~~~-~~~~~~~L~P~~c~~~~~-~~~~~~~SYk 72 (76)
+.|.+...++|+..|-||.+--+++... +|+++ +|-+. ..|+-..|++---+.... +.-|.+.|-|
T Consensus 82 ~~i~~vFkrhGa~~iDTPVFElkeiL~g-----KYGEdskLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~sik 152 (518)
T KOG1936|consen 82 STIKEVFKRHGAETIDTPVFELKEILTG-----KYGEDSKLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITSIK 152 (518)
T ss_pred HHHHHHHHHcCCeeccccchhHHHHHhh-----hcccccceeEehhhcCCcEEEeecccccHHHHHHHHcccccce
Confidence 4577788999999999999999988742 56665 66663 455667788766666654 4445666643
No 101
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.29 E-value=6.6 Score=29.43 Aligned_cols=42 Identities=29% Similarity=0.567 Sum_probs=30.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhC--CcccccccceEE
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSG--HAANYKENMFLI 43 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG--~~~~~~~~mf~~ 43 (76)
+.+|+.....||+||.+|+|+....=-+|- -++-|+++.|..
T Consensus 251 r~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLT 294 (545)
T KOG0555|consen 251 RAMRDHYFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLT 294 (545)
T ss_pred HHHHHHHHhcCceecCCCceEEEEecCcceEEeecccCchhhcc
Confidence 468889999999999999999876533332 134567766654
No 102
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.62 E-value=20 Score=21.20 Aligned_cols=38 Identities=34% Similarity=0.499 Sum_probs=26.9
Q ss_pred hhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCC
Q 035006 24 MKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRV 73 (76)
Q Consensus 24 ~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~ 73 (76)
..||..-|+|.+|+ +|-++ .|.+-|-.+.+--..||.+
T Consensus 41 ~~lWR~~Geyanys--lFd~d----------d~~eLh~~L~~~P~f~ym~ 78 (98)
T COG4829 41 LRLWRRPGEYANYS--LFDAD----------DNGELHQLLASMPPFSYMT 78 (98)
T ss_pred HHHHhcccccccee--eecCC----------chHHHHHHHhcCCCccccc
Confidence 46899999999994 67543 3556676666666677765
No 103
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=51.53 E-value=60 Score=22.13 Aligned_cols=63 Identities=21% Similarity=0.328 Sum_probs=36.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh-hhh----hhCCcccccccceEE-e-ec--CceEEEcCCChHHHHHHH
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK-LWE----TSGHAANYKENMFLI-D-IE--KQEFGLKPMNCPGHCLMF 64 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~-lw~----~SG~~~~~~~~mf~~-~-~~--~~~~~L~P~~c~~~~~~~ 64 (76)
+-|++.+...||+++..|.+.... -.. .-.|-..-..+.|-+ . .. ++..+|+...=|......
T Consensus 24 ~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l 95 (247)
T PF01409_consen 24 REIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTL 95 (247)
T ss_dssp HHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHH
T ss_pred HHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHH
Confidence 347888999999999999996432 221 122222112234444 2 12 456778877777766665
No 104
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=49.93 E-value=14 Score=27.52 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=19.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+-+++.+...||+||.+|.+-..
T Consensus 240 ~~~~~~f~~~Gf~e~~~p~vE~~ 262 (489)
T PRK04172 240 DEVRDILVEMGFEEMKGPLVETE 262 (489)
T ss_pred HHHHHHHHHCCCEEeeCCeeeec
Confidence 45788889999999999999743
No 105
>PF08868 YugN: YugN-like family; InterPro: IPR014967 This entry contains proteins related to Bacillus subtilis YugN, they are functionally uncharacterised. ; PDB: 2R5X_A 2PWW_A.
Probab=48.69 E-value=29 Score=21.82 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccce--EEeecCceEEEc
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMF--LIDIEKQEFGLK 53 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf--~~~~~~~~~~L~ 53 (76)
.+++.|.+.||. .+|.|+ |.--.| +++..+..|+|+
T Consensus 16 ~L~~~m~~~Gf~--------------~~G~Wd-YdrgtfD~Kl~~~~~~~yLR 53 (132)
T PF08868_consen 16 ELDEVMEPLGFV--------------RGGQWD-YDRGTFDYKLDDEEGYYYLR 53 (132)
T ss_dssp HHHHHHHHTT-E--------------EESTT--SSEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHCCcE--------------EcCCcc-eeeEEEEEEEecCCCEEEEE
Confidence 456677777775 578898 443455 334444566664
No 106
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=43.10 E-value=16 Score=28.18 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=16.4
Q ss_pred HHHHH-HHcCCeEeeCCcccch
Q 035006 4 IKKQY-WDRGYQEVISPNMYNM 24 (76)
Q Consensus 4 ir~e~-~~~G~~ev~~P~l~~~ 24 (76)
||+.+ ++.||.||.||.|.++
T Consensus 188 iR~yl~n~~GFvevETPtLFkr 209 (628)
T KOG2411|consen 188 IRRYLNNRHGFVEVETPTLFKR 209 (628)
T ss_pred HHHHHhhhcCeeeccCcchhcc
Confidence 45544 6679999999999765
No 107
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.89 E-value=31 Score=26.08 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=26.9
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID 44 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~ 44 (76)
.+.|+.+...||.||.||-|..... .=+.++|+++
T Consensus 236 ~~FRe~L~~kgF~EIhTpKli~asS--------EGGanvF~v~ 270 (533)
T KOG0556|consen 236 FAFREYLRSKGFVEIHTPKLIGASS--------EGGANVFRVS 270 (533)
T ss_pred HHHHHHHHhcCcceecccccccccC--------CCCceeEEEE
Confidence 3578899999999999999876532 3456788775
No 108
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=35.90 E-value=84 Score=17.72 Aligned_cols=25 Identities=8% Similarity=0.218 Sum_probs=18.3
Q ss_pred EeecCceEEEcCCChHHHHHHHhCc
Q 035006 43 IDIEKQEFGLKPMNCPGHCLMFDHK 67 (76)
Q Consensus 43 ~~~~~~~~~L~P~~c~~~~~~~~~~ 67 (76)
+.-.++.|+|.|-+.+..++-++++
T Consensus 75 I~t~~~~y~isp~~~~~fi~~l~~r 99 (100)
T PF10882_consen 75 IKTKDKTYVISPEDPEEFIEALKKR 99 (100)
T ss_pred EEECCceEEEcCCCHHHHHHHHHhc
Confidence 3334578999999988888766543
No 109
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=34.36 E-value=44 Score=22.55 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=27.4
Q ss_pred HHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHH
Q 035006 4 IKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPG 59 (76)
Q Consensus 4 ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~ 59 (76)
+|+-..+.+..+...|++. .|+...+--|. .--+.|+|||+|=-+
T Consensus 24 VR~yv~~~~g~~~l~pll~---------v~~~~~~i~~~--~Lp~~fViK~nhgsg 68 (239)
T PF14305_consen 24 VREYVEEKIGEEYLPPLLG---------VYDNPDDIDFD--SLPDKFVIKPNHGSG 68 (239)
T ss_pred HHHHHHHhCCCceECceee---------cCCChhhhhhh--cCCCCEEEEEecCCC
Confidence 5666677777788888873 34444433332 122468888877444
No 110
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=34.33 E-value=1.6e+02 Score=22.31 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=43.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhh-hhhhCCcccccc-cceEEe--ecCceEEEcCCChHHHHHHHhCcCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKL-WETSGHAANYKE-NMFLID--IEKQEFGLKPMNCPGHCLMFDHKVR 69 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~l-w~~SG~~~~~~~-~mf~~~--~~~~~~~L~P~~c~~~~~~~~~~~~ 69 (76)
+-+|+.+...||+|+.|..+.+.+. ...-|.. .+ +..++. ..++.=+|+++-=|.....++.-.+
T Consensus 366 ~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~---~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~ 434 (552)
T PRK09616 366 RAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLE---PEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKH 434 (552)
T ss_pred HHHHHHHHhCCcceeccceEechHHHHHHhCCC---CCCCeEEEcCCCccchheEeccchHHHHHHHHhccC
Confidence 4578889999999999999999855 5443321 11 245553 2334566888888888876654333
No 111
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=30.70 E-value=45 Score=25.60 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=23.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhh-hhhh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKL-WETS 30 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~l-w~~S 30 (76)
+.+|+.+...||+|+.+-.|.+.+- +..-
T Consensus 404 ~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~ 433 (597)
T PLN02265 404 DLLRAEVAMAGFTEVLTWILCSHKENFAML 433 (597)
T ss_pred HHHHHHHHHCCceeeeceeeCChHHHHHhh
Confidence 4578999999999999999998854 5443
No 112
>PF14044 NETI: NETI protein
Probab=27.22 E-value=54 Score=17.72 Aligned_cols=15 Identities=20% Similarity=0.102 Sum_probs=11.6
Q ss_pred HHHHHHHHcCCeEee
Q 035006 3 FIKKQYWDRGYQEVI 17 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~ 17 (76)
=+.+.|.+.||..|.
T Consensus 12 ~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 12 DCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHcCCCcee
Confidence 367788899998874
No 113
>PRK00754 signal recognition particle protein Srp19; Provisional
Probab=27.12 E-value=68 Score=18.90 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=22.7
Q ss_pred HHHHHHHcCCeEeeCCc-ccchhhhhhhCCc
Q 035006 4 IKKQYWDRGYQEVISPN-MYNMKLWETSGHA 33 (76)
Q Consensus 4 ir~e~~~~G~~ev~~P~-l~~~~lw~~SG~~ 33 (76)
|.+...+.|+.-+.-|. ..+++-|+.+|+.
T Consensus 40 I~~a~~~lgl~~~~e~~K~yPr~~~e~~GRv 70 (95)
T PRK00754 40 IIEAAEKLGLNPEVEPDKAYPRSWWEVSGRV 70 (95)
T ss_pred HHHHHHHcCCCeEEeeCCCCCchHhcCCCEE
Confidence 45667888988887776 7888877788865
No 114
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=26.97 E-value=35 Score=23.18 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCeEeeCCcccchhhhhhhCCcc
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMKLWETSGHAA 34 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~ 34 (76)
||...+++.|...+......|...|..+|++.
T Consensus 102 fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~ 133 (234)
T PF06888_consen 102 FIETILEHHGLRDCFSEIFTNPACFDADGRLR 133 (234)
T ss_pred HHHHHHHhCCCccccceEEeCCceecCCceEE
Confidence 67778899999999999999999999999753
No 115
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=26.23 E-value=25 Score=26.41 Aligned_cols=25 Identities=16% Similarity=0.478 Sum_probs=21.3
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKL 26 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~l 26 (76)
.-+|+..-+.||.|+.-|.+++.+-
T Consensus 54 q~lReAYLr~GF~EmvNPlivde~e 78 (536)
T COG2024 54 QRLREAYLRMGFSEMVNPLIVDEEE 78 (536)
T ss_pred HHHHHHHHHhhHHHhcCccccCHHH
Confidence 3578899999999999999998753
No 116
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=25.48 E-value=80 Score=24.59 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCeEeeCCcccchhhhhhhCC
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMKLWETSGH 32 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~ 32 (76)
.+|+.+...||+||.|-.+.+.+.-..-+.
T Consensus 359 ~vr~~l~~~G~~Evitysl~s~e~~~~~~~ 388 (650)
T COG0072 359 KVRRALVGLGFQEVITYSLTSPEEAKLFGL 388 (650)
T ss_pred HHHHHHHhCCcceEeeeccCCHHHHHHhcc
Confidence 478899999999999999999987766654
No 117
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=24.74 E-value=30 Score=20.25 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=12.9
Q ss_pred hhhhhhhCCcccccccc
Q 035006 24 MKLWETSGHAANYKENM 40 (76)
Q Consensus 24 ~~lw~~SG~~~~~~~~m 40 (76)
.++=..+|.|+-|+.++
T Consensus 18 ~Di~nTTGsWDlYG~d~ 34 (90)
T PLN00017 18 GDLENTTGSWDLYGSDA 34 (90)
T ss_pred hhhccCcccceeeccCC
Confidence 34456799999998766
No 118
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=23.95 E-value=82 Score=18.80 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=13.0
Q ss_pred hHHHHHHHHcCCeEe
Q 035006 2 EFIKKQYWDRGYQEV 16 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev 16 (76)
+.|+++|.+.||++.
T Consensus 42 ~~v~~~L~~~G~~~~ 56 (151)
T PF13590_consen 42 DAVEQELAAKGYRRV 56 (151)
T ss_pred HHHHHHHHHCCCeec
Confidence 467889999999998
No 119
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=22.93 E-value=1e+02 Score=24.45 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCeEeeCCcccchhhhhhhC
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMKLWETSG 31 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~lw~~SG 31 (76)
-+|+.+...||+|+.|-.+.+.+-...-|
T Consensus 499 ~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~ 527 (798)
T TIGR00472 499 KLRTLLVGLGLNEVITYSLVSSEKAEKFN 527 (798)
T ss_pred HHHHHHHHCCCcEEeccccCCHHHHHhhc
Confidence 46888999999999999999996665544
No 120
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=22.74 E-value=80 Score=23.95 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=37.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhh-hhhCCcccccccceEEe--ecCceEEEcCCChHHHHHHHhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLW-ETSGHAANYKENMFLID--IEKQEFGLKPMNCPGHCLMFDH 66 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw-~~SG~~~~~~~~mf~~~--~~~~~~~L~P~~c~~~~~~~~~ 66 (76)
+-+|+.+...||+|+.+-.+.+.+-. ..-|. + .++..++. ..++.=+|+++-=|.....++.
T Consensus 369 ~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~-~--~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~ 433 (551)
T TIGR00471 369 DIIREIMVGLGFQEVIPLTLTSEEVNFKRMRI-E--DNNDVKVANPKTLEYTIVRTSLLPGLLETLSE 433 (551)
T ss_pred HHHHHHHHhCCceeeccceEccHHHHHHHhcc-C--CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHh
Confidence 35788899999999999999998544 33221 1 11233442 1223344666666676665443
No 121
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=22.69 E-value=76 Score=19.57 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=11.3
Q ss_pred HHHHHHHcCCeEeeC
Q 035006 4 IKKQYWDRGYQEVIS 18 (76)
Q Consensus 4 ir~e~~~~G~~ev~~ 18 (76)
+|+.+.+.||+.|.|
T Consensus 24 Lr~~l~~~Gf~~V~T 38 (137)
T PF08002_consen 24 LREALEDLGFTNVRT 38 (137)
T ss_dssp HHHHHHHCT-EEEEE
T ss_pred HHHHHHHcCCCCceE
Confidence 577788899999885
No 122
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=21.57 E-value=87 Score=26.58 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=17.2
Q ss_pred HHHHHcCCeEeeCCcccchhhhhhhCCcc
Q 035006 6 KQYWDRGYQEVISPNMYNMKLWETSGHAA 34 (76)
Q Consensus 6 ~e~~~~G~~ev~~P~l~~~~lw~~SG~~~ 34 (76)
+.+++-||..|.| ...--..||||-
T Consensus 42 ~~l~~qgfmpvlt----gv~p~~~sghwi 66 (1439)
T PF12252_consen 42 DALNQQGFMPVLT----GVSPRQDSGHWI 66 (1439)
T ss_pred hhHhccCCceeec----CcCCCCcCceeE
Confidence 4567778866554 445556899995
No 123
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=21.47 E-value=44 Score=25.64 Aligned_cols=30 Identities=23% Similarity=0.622 Sum_probs=23.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh-hhhhhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK-LWETSG 31 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~-lw~~SG 31 (76)
+-+|+..-+.||+|+.-|.++... .+++=|
T Consensus 54 ~~lr~ayl~~gf~e~~np~iv~~~~~~~qfg 84 (529)
T PRK06253 54 ERLREAYLRMGFEEMINPVIVDEQDIYKQFG 84 (529)
T ss_pred HHHHHHHHhcChHhhcCceeecHHHHHHhhC
Confidence 447889999999999999998764 444433
No 124
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=20.84 E-value=77 Score=19.61 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=10.9
Q ss_pred HHHHHHHHcCCeE
Q 035006 3 FIKKQYWDRGYQE 15 (76)
Q Consensus 3 ~ir~e~~~~G~~e 15 (76)
.+.+||.++||+.
T Consensus 56 lv~~EM~~RGY~~ 68 (120)
T TIGR02328 56 LVMEEMATRGYHV 68 (120)
T ss_pred HHHHHHHHcCCCC
Confidence 5778999999974
No 125
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses.
Probab=20.31 E-value=40 Score=23.83 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=8.0
Q ss_pred CCCCCCCCC
Q 035006 68 VRSYRVLSL 76 (76)
Q Consensus 68 ~~SYk~LPl 76 (76)
++|.||||.
T Consensus 74 VHSlKDlP~ 82 (292)
T cd00494 74 VHSLKDVPT 82 (292)
T ss_pred EeccccCCC
Confidence 899999994
No 126
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=20.04 E-value=49 Score=25.38 Aligned_cols=28 Identities=18% Similarity=0.548 Sum_probs=22.3
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh-hhhh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK-LWET 29 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~-lw~~ 29 (76)
+-+|+..-+.||+|+.-|.++... .+++
T Consensus 54 ~~lreayl~~gf~e~~np~iv~e~~v~kq 82 (533)
T TIGR00470 54 ERLREAYLRMGFSEMVNPLIVDEMHIYKQ 82 (533)
T ss_pred HHHHHHHHhcChHhhcCceeecHHHHHHh
Confidence 457889999999999999998764 4443
Done!