Query 035006
Match_columns 76
No_of_seqs 112 out of 1067
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:45:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lss_A Seryl-tRNA synthetase; 99.9 9.3E-25 3.2E-29 157.9 4.5 76 1-76 215-290 (484)
2 3err_A Fusion protein of micro 99.9 7.1E-24 2.4E-28 154.7 5.3 74 1-76 282-355 (536)
3 1qf6_A THRRS, threonyl-tRNA sy 99.9 1.6E-23 5.5E-28 154.8 4.3 76 1-76 278-353 (642)
4 3vbb_A Seryl-tRNA synthetase, 99.9 2.4E-23 8.1E-28 151.6 5.0 76 1-76 208-292 (522)
5 1wle_A Seryl-tRNA synthetase; 99.9 3.5E-23 1.2E-27 150.1 3.9 76 1-76 226-303 (501)
6 3uh0_A Threonyl-tRNA synthetas 99.9 2.2E-22 7.4E-27 144.4 5.8 76 1-76 71-150 (460)
7 1nyr_A Threonyl-tRNA synthetas 99.9 2.2E-22 7.6E-27 148.4 4.1 75 2-76 279-355 (645)
8 1evl_A Threonyl-tRNA synthetas 99.8 2.7E-21 9.2E-26 135.7 5.1 75 2-76 38-112 (401)
9 2j3l_A Prolyl-tRNA synthetase; 99.8 1.7E-21 5.8E-26 141.6 3.9 75 2-76 55-130 (572)
10 2i4l_A Proline-tRNA ligase; al 99.8 2.4E-21 8.2E-26 138.4 4.3 75 2-76 75-150 (458)
11 4hvc_A Bifunctional glutamate/ 99.8 8.2E-21 2.8E-25 138.1 5.7 76 1-76 68-149 (519)
12 3ial_A Prolyl-tRNA synthetase; 99.8 2.6E-21 9E-26 140.7 2.5 76 1-76 62-143 (518)
13 1ses_A Seryl-tRNA synthetase; 99.8 9E-21 3.1E-25 135.0 4.3 74 1-76 173-246 (421)
14 2dq0_A Seryl-tRNA synthetase; 99.8 5.9E-21 2E-25 137.1 3.1 74 1-76 200-273 (455)
15 3qne_A Seryl-tRNA synthetase, 99.8 7.9E-21 2.7E-25 137.4 3.8 76 1-76 192-269 (485)
16 2dq3_A Seryl-tRNA synthetase; 99.8 6.4E-20 2.2E-24 130.7 4.1 73 2-76 180-252 (425)
17 1hc7_A Prolyl-tRNA synthetase; 99.8 1.6E-19 5.3E-24 130.0 4.4 75 2-76 52-132 (477)
18 1nj8_A Proline-tRNA synthetase 99.8 8.2E-19 2.8E-23 125.7 7.3 75 2-76 46-126 (459)
19 3a32_A Probable threonyl-tRNA 99.8 2.7E-19 9.1E-24 128.2 3.9 75 2-76 57-134 (471)
20 1nj1_A PROR, proline-tRNA synt 99.7 3.3E-19 1.1E-23 128.9 2.5 74 2-76 79-158 (501)
21 2cja_A Seryl-tRNA synthetase; 99.7 5.4E-19 1.9E-23 128.7 2.7 75 2-76 239-345 (522)
22 3mf2_A BLL0957 protein; aminoa 99.7 2.3E-18 7.9E-23 120.3 2.8 68 2-70 72-165 (346)
23 1qe0_A Histidyl-tRNA synthetas 99.7 5.3E-18 1.8E-22 118.9 3.1 75 2-76 24-102 (420)
24 1h4v_B Histidyl-tRNA synthetas 99.7 3.1E-17 1.1E-21 115.2 6.6 75 2-76 25-102 (421)
25 4e51_A Histidine--tRNA ligase; 99.6 9.7E-17 3.3E-21 115.1 4.7 74 2-76 54-131 (467)
26 1htt_A Histidyl-tRNA synthetas 99.6 1.6E-16 5.5E-21 111.6 4.4 74 2-76 26-102 (423)
27 1ati_A Glycyl-tRNA synthetase; 99.6 1E-16 3.6E-21 116.0 0.1 41 2-42 47-89 (505)
28 1wu7_A Histidyl-tRNA synthetas 99.6 4.3E-15 1.5E-19 105.0 6.4 71 2-76 28-100 (434)
29 1z7m_A ATP phosphoribosyltrans 99.5 2E-14 7E-19 99.8 6.7 72 2-76 44-118 (344)
30 2zt5_A Glycyl-tRNA synthetase; 99.4 1.3E-14 4.4E-19 108.4 0.5 42 2-43 109-151 (693)
31 1g5h_A Mitochondrial DNA polym 99.4 1.7E-15 5.7E-20 108.7 -5.1 75 2-76 70-164 (454)
32 3ikl_A DNA polymerase subunit 99.4 1.4E-13 4.9E-18 99.1 2.4 59 3-76 114-174 (459)
33 3rac_A Histidine-tRNA ligase; 99.4 4.9E-13 1.7E-17 93.8 4.3 72 2-76 45-118 (373)
34 3od1_A ATP phosphoribosyltrans 99.3 2.2E-12 7.4E-17 91.2 5.6 72 2-76 32-104 (400)
35 3lc0_A Histidyl-tRNA synthetas 99.3 3.8E-12 1.3E-16 91.2 4.8 72 2-76 51-124 (456)
36 3dsq_A Pyrrolysyl-tRNA synthet 99.2 2E-11 7E-16 83.2 5.2 72 2-76 78-150 (288)
37 3net_A Histidyl-tRNA synthetas 98.9 8.7E-10 3E-14 78.9 5.0 72 2-76 34-121 (465)
38 1usy_A ATP phosphoribosyltrans 98.9 4.6E-10 1.6E-14 75.7 3.1 61 2-76 8-71 (275)
39 4g84_A Histidine--tRNA ligase, 98.9 1.3E-09 4.5E-14 77.0 4.9 62 2-65 36-98 (464)
40 4g85_A Histidine-tRNA ligase, 98.9 1.1E-09 3.8E-14 78.9 4.3 62 2-65 89-151 (517)
41 3qtc_A Pyrrolysyl-tRNA synthet 98.2 2.5E-06 8.4E-11 57.7 6.1 62 2-66 84-147 (290)
42 1eov_A ASPRS, aspartyl-tRNA sy 95.1 0.03 1E-06 40.4 4.7 44 2-53 186-229 (487)
43 1nnh_A Asparaginyl-tRNA synthe 94.6 0.085 2.9E-06 35.6 5.7 54 2-57 23-77 (294)
44 1x54_A Asparaginyl-tRNA synthe 94.5 0.041 1.4E-06 39.2 4.2 44 2-53 143-186 (434)
45 1wyd_A Hypothetical aspartyl-t 94.2 0.07 2.4E-06 37.9 4.8 45 2-54 142-186 (429)
46 2xgt_A Asparaginyl-tRNA synthe 93.3 0.11 3.6E-06 37.0 4.3 45 2-54 140-184 (435)
47 1n9w_A Aspartyl-tRNA synthetas 92.9 0.055 1.9E-06 38.4 2.4 44 2-53 133-176 (422)
48 3nem_A Aspartyl-tRNA synthetas 91.8 0.37 1.3E-05 34.3 5.6 49 2-58 145-193 (438)
49 3a74_A Lysyl-tRNA synthetase; 91.1 0.24 8.1E-06 35.9 4.0 48 2-57 182-231 (493)
50 3a5y_A GENX, putative lysyl-tR 90.0 1.1 3.6E-05 31.0 6.4 24 2-25 44-67 (345)
51 1e1o_A Lysyl-tRNA synthetase, 90.0 0.3 1E-05 35.5 3.7 48 2-57 191-240 (504)
52 3m4p_A Ehasnrs, asparaginyl-tR 89.3 0.47 1.6E-05 34.0 4.3 45 2-54 164-208 (456)
53 1c0a_A Aspartyl tRNA synthetas 82.7 0.74 2.5E-05 33.9 2.5 24 2-25 146-169 (585)
54 1l0w_A Aspartyl-tRNA synthetas 82.5 0.78 2.7E-05 33.8 2.6 23 2-24 152-174 (580)
55 3ig2_A Phenylalanyl-tRNA synth 80.6 8.5 0.00029 24.3 6.7 69 2-72 11-82 (213)
56 3bju_A Lysyl-tRNA synthetase; 80.4 0.98 3.3E-05 32.9 2.4 50 2-59 184-235 (521)
57 3fhk_A UPF0403 protein YPHP; d 80.2 0.7 2.4E-05 28.6 1.4 24 3-26 18-41 (147)
58 4ex5_A Lysine--tRNA ligase; st 79.1 1.1 3.9E-05 32.7 2.4 23 2-24 212-234 (529)
59 3i7f_A Aspartyl-tRNA synthetas 78.2 1.3 4.6E-05 32.5 2.6 24 2-25 252-275 (548)
60 2rhq_A Phenylalanyl-tRNA synth 76.6 4.4 0.00015 27.0 4.6 61 2-66 60-126 (294)
61 1b7y_A Phers, protein (phenyla 72.2 15 0.00051 25.3 6.5 64 2-66 108-189 (350)
62 3ica_A Phenylalanyl-tRNA synth 71.8 14 0.00049 23.2 6.0 62 2-65 11-74 (213)
63 4ah6_A Aspartate--tRNA ligase, 61.5 4.8 0.00017 30.0 2.4 23 2-24 156-179 (617)
64 3l4g_B Phenylalanyl-tRNA synth 59.0 18 0.00061 26.5 5.0 63 2-65 398-463 (589)
65 2du3_A O-phosphoseryl-tRNA syn 47.0 12 0.0004 27.6 2.4 24 2-25 54-77 (534)
66 2pww_A Uncharacterized protein 41.0 33 0.0011 20.5 3.4 36 3-53 19-56 (127)
67 2r5x_A Protein YUGN, uncharact 39.6 45 0.0015 20.0 3.9 36 3-53 19-56 (129)
68 2du7_A O-phosphoseryl-tRNA syn 33.2 23 0.0008 26.1 2.2 31 2-32 64-95 (549)
69 2rhq_B Phenylalanyl-tRNA synth 29.9 33 0.0011 26.1 2.6 60 2-65 500-562 (795)
70 1b7y_B Phers, protein (phenyla 29.6 1.2E+02 0.004 23.2 5.5 60 2-65 496-557 (785)
71 2odr_B Phosphoseryl-tRNA synth 29.0 33 0.0011 25.9 2.4 23 2-24 72-94 (648)
72 2odr_A Phosphoseryl-tRNA synth 28.5 34 0.0012 25.9 2.4 23 2-24 72-94 (665)
73 2odr_D Phosphoseryl-tRNA synth 28.1 35 0.0012 25.9 2.4 23 2-24 72-94 (685)
74 2odr_C Phosphoseryl-tRNA synth 27.8 35 0.0012 26.0 2.4 23 2-24 72-94 (701)
75 3pco_A Phenylalanyl-tRNA synth 26.7 29 0.00099 23.7 1.7 62 2-66 114-180 (327)
76 2wsc_H Photosystem I reaction 24.9 22 0.00076 21.6 0.7 17 24-40 61-77 (144)
77 3pco_B Phenylalanyl-tRNA synth 24.4 1.4E+02 0.0047 22.8 5.1 67 2-72 496-565 (795)
78 2x3d_A SSO6206; unknown functi 23.8 20 0.00068 20.6 0.3 15 51-65 11-25 (96)
No 1
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.90 E-value=9.3e-25 Score=157.85 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=72.3
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++++.+.||+||.+|.|++.++|++||||++|+++||++..++++|+|+||+|+.++.+++++++|||+||+
T Consensus 215 ~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~sy~dLPl 290 (484)
T 3lss_A 215 VSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPL 290 (484)
T ss_dssp HHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCE
T ss_pred HHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccchhhCCe
Confidence 3799999999999999999999999999999999999999999655678999999999999999999999999996
No 2
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.89 E-value=7.1e-24 Score=154.69 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=70.2
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++++.+.||+||.+|.|++.++|++||||++|+++||++. +++|+|+||+|+.++.+++++++||||||+
T Consensus 282 ~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~--~~~~~L~PT~E~~~~~l~~~~i~s~~~LPl 355 (536)
T 3err_A 282 LRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPYEALPL 355 (536)
T ss_dssp HHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET--TTTEEECSSTHHHHHHHTTTCEEEGGGCSE
T ss_pred HHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec--CCCEEEccCCcHHHHHHHhcccccHhhCCe
Confidence 37999999999999999999999999999999999999999985 358999999999999999999999999996
No 3
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.88 E-value=1.6e-23 Score=154.84 Aligned_cols=76 Identities=43% Similarity=0.826 Sum_probs=72.5
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++++|+++.+.||+||.||+|.+.++|++||||++|+++||+.++++++|+|+||+||.|+.+|++.++|||+||+
T Consensus 278 ~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPl 353 (642)
T 1qf6_A 278 EVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPL 353 (642)
T ss_dssp HHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSE
T ss_pred HHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceeeecCCceEEecCCCCHHHHHHHHhhhhhccccCe
Confidence 3689999999999999999999999999999999999999997677889999999999999999999999999995
No 4
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.88 E-value=2.4e-23 Score=151.55 Aligned_cols=76 Identities=11% Similarity=0.170 Sum_probs=69.0
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeec---------CceEEEcCCChHHHHHHHhCcCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIE---------KQEFGLKPMNCPGHCLMFDHKVRSY 71 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~---------~~~~~L~P~~c~~~~~~~~~~~~SY 71 (76)
++|+++++.+.||+||.+|.|++.++|++||||++|+++||++... +++|+|+||+|+.++.+|+++++||
T Consensus 208 ~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~ 287 (522)
T 3vbb_A 208 IQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRP 287 (522)
T ss_dssp HHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECT
T ss_pred HHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhheccc
Confidence 3799999999999999999999999999999999999999999532 4689999999999999999999999
Q ss_pred CCCCC
Q 035006 72 RVLSL 76 (76)
Q Consensus 72 k~LPl 76 (76)
++||+
T Consensus 288 ~dLPl 292 (522)
T 3vbb_A 288 EDLPI 292 (522)
T ss_dssp TTCCE
T ss_pred ccCCe
Confidence 99996
No 5
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.87 E-value=3.5e-23 Score=150.11 Aligned_cols=76 Identities=20% Similarity=0.348 Sum_probs=71.4
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccc-cceEEeec-CceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKE-NMFLIDIE-KQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~-~mf~~~~~-~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++++.+.||+||.+|.|++.++|++||||++|++ +||++..+ +++|+|+||+|+.++.++++++.||++||+
T Consensus 226 ~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~s~~~LPl 303 (501)
T 1wle_A 226 VNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSVAFRDLPI 303 (501)
T ss_dssp HHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEEEGGGCSE
T ss_pred HHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccCCcccCCe
Confidence 37999999999999999999999999999999999999 99999533 568999999999999999999999999996
No 6
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=99.86 E-value=2.2e-22 Score=144.41 Aligned_cols=76 Identities=54% Similarity=1.080 Sum_probs=69.4
Q ss_pred ChHHHHHH-HHcCCeEeeCCcccchhhhhhhCCcccccccceEEee---cCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQY-WDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDI---EKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~-~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~---~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++++++++ .+.||+||.||+|.+.++|++||||++|+++||.+.. ++++|+|+||+|+.|+.+|++.++|||+||+
T Consensus 71 ~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPl 150 (460)
T 3uh0_A 71 IEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPL 150 (460)
T ss_dssp HHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSE
T ss_pred HHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCe
Confidence 36899999 9999999999999999999999999999999999853 3678999999999999999999999999995
No 7
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.85 E-value=2.2e-22 Score=148.43 Aligned_cols=75 Identities=36% Similarity=0.741 Sum_probs=72.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecC-ceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEK-QEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~-~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++++.+.||+||.||+|.+.++|++||||+.|+++||++ ++++ ++|+|+||+||.|+.+|++..+|||+||+
T Consensus 279 ~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPl 355 (645)
T 1nyr_A 279 RYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPI 355 (645)
T ss_dssp HHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCE
T ss_pred HHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCe
Confidence 689999999999999999999999999999999999999997 6778 89999999999999999999999999995
No 8
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=99.83 E-value=2.7e-21 Score=135.72 Aligned_cols=75 Identities=44% Similarity=0.846 Sum_probs=71.9
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++++.+.||+||.||.|.+.++|+.||||+.|+++||+.++++++++|+||+|+.++.++++.+.|||+||+
T Consensus 38 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~ 112 (401)
T 1evl_A 38 VFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPL 112 (401)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBGGGCSE
T ss_pred HHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhhhhCCh
Confidence 689999999999999999999999999999999999999997677889999999999999999999999999995
No 9
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.83 E-value=1.7e-21 Score=141.63 Aligned_cols=75 Identities=20% Similarity=0.469 Sum_probs=71.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++++.+.||+||.||+|.+.++|+.||||+.|+++||++ ++++++++|+||+|+.|+.+|++.++|||+||+
T Consensus 55 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~ 130 (572)
T 2j3l_A 55 TIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINSYKRLPL 130 (572)
T ss_dssp HHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCCE
T ss_pred HHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCCCeEEEccccHHHHHHHHHhhccChhhcCH
Confidence 689999999999999999999999999999999999999998 567789999999999999999999999999995
No 10
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=99.83 E-value=2.4e-21 Score=138.39 Aligned_cols=75 Identities=27% Similarity=0.440 Sum_probs=71.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++++.+.||+||.||.|.+.++|+.||||+.|+++||++ ++++++++|+||||+.++.++++.+.|||+||+
T Consensus 75 ~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~ 150 (458)
T 2i4l_A 75 QIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKSYKSLPL 150 (458)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCBGGGCSE
T ss_pred HHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhhccccCe
Confidence 689999999999999999999999999999999999999999 467889999999999999999999999999995
No 11
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.82 E-value=8.2e-21 Score=138.14 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=69.6
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhh-hCCcccccccceEEe-ecC----ceEEEcCCChHHHHHHHhCcCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAANYKENMFLID-IEK----QEFGLKPMNCPGHCLMFDHKVRSYRVL 74 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~~~~~mf~~~-~~~----~~~~L~P~~c~~~~~~~~~~~~SYk~L 74 (76)
++++++++.+.||++|.||+|.+.++|++ ||||+.|+++||.+. .++ +.|+|+||+|+.|+.+|++.++|||||
T Consensus 68 ~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdL 147 (519)
T 4hvc_A 68 KDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDL 147 (519)
T ss_dssp HHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGC
T ss_pred HHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccC
Confidence 36899999999999999999999999996 999999999999884 332 369999999999999999999999999
Q ss_pred CC
Q 035006 75 SL 76 (76)
Q Consensus 75 Pl 76 (76)
|+
T Consensus 148 Pl 149 (519)
T 4hvc_A 148 PI 149 (519)
T ss_dssp CE
T ss_pred Ce
Confidence 96
No 12
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.82 E-value=2.6e-21 Score=140.74 Aligned_cols=76 Identities=22% Similarity=0.454 Sum_probs=70.3
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhh-hhCCcccccccceEEeec-----CceEEEcCCChHHHHHHHhCcCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWE-TSGHAANYKENMFLIDIE-----KQEFGLKPMNCPGHCLMFDHKVRSYRVL 74 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~-~SG~~~~~~~~mf~~~~~-----~~~~~L~P~~c~~~~~~~~~~~~SYk~L 74 (76)
++++++++.+.||++|.||.|.+.++|. .||||+.|+++||.+... +++|+|+||+|+.++.+|++.++|||||
T Consensus 62 ~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdL 141 (518)
T 3ial_A 62 MRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDL 141 (518)
T ss_dssp HHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGC
T ss_pred HHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccC
Confidence 3789999999999999999999999996 699999999999998532 5689999999999999999999999999
Q ss_pred CC
Q 035006 75 SL 76 (76)
Q Consensus 75 Pl 76 (76)
|+
T Consensus 142 Pl 143 (518)
T 3ial_A 142 PL 143 (518)
T ss_dssp CE
T ss_pred Ce
Confidence 96
No 13
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.81 E-value=9e-21 Score=134.99 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=69.9
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++++.+.||++|.||.|.+.++|+.||||++|+++||++. +++++|+||+|+.++.++++++.||++||+
T Consensus 173 ~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPl 246 (421)
T 1ses_A 173 LRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPYEALPL 246 (421)
T ss_dssp HHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT--TSSEEECSSTHHHHHHTTTTCEEEGGGCSE
T ss_pred HHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEc--CCeEEEeecCcHHHHHHhcccccCchhCCE
Confidence 37899999999999999999999999999999999999999984 368999999999999999999999999995
No 14
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.81 E-value=5.9e-21 Score=137.10 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=69.8
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+++++.+.||++|.+|.|.+.++|++||||++|+++||++. +++++|+||+|+.++.+|++.+.||++||+
T Consensus 200 ~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~LrPt~e~~~~~~~~~~~~s~~~LPl 273 (455)
T 2dq0_A 200 IRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE--DEDLYLIPTAEHPLAGMHANEILDGKDLPL 273 (455)
T ss_dssp HHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT--TSSCEECSSTHHHHHHTTTTEEEETTTCSE
T ss_pred HHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec--CCcEEEcCcCcHHHHHHHHhCccCchhCCE
Confidence 36899999999999999999999999999999999999999884 468999999999999999999999999995
No 15
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.81 E-value=7.9e-21 Score=137.41 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=70.7
Q ss_pred ChHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCC--CCCCCC
Q 035006 1 MEFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRS--YRVLSL 76 (76)
Q Consensus 1 ~~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~S--Yk~LPl 76 (76)
++|+++++.+.||+||.+|.|++.++|++||||++|+++||++...+++++|.||+|..++.++++++.| |||||+
T Consensus 192 ~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPl 269 (485)
T 3qne_A 192 INYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFESPAEQLPV 269 (485)
T ss_dssp HHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESSHHHHCCE
T ss_pred HHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCCeEEEeccccHHHHHHHhccccccchhcCCe
Confidence 3799999999999999999999999999999999999999999644678999999999999999999887 999996
No 16
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.78 E-value=6.4e-20 Score=130.71 Aligned_cols=73 Identities=14% Similarity=0.348 Sum_probs=69.4
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++.+.+.||++|.||.|.+.++|+.||||++|+++||++. +++++|+||+|+.++.+|++.+.||++||+
T Consensus 180 ~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~~~LPl 252 (425)
T 2dq3_A 180 NFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKEENLPI 252 (425)
T ss_dssp HHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEETTTCCE
T ss_pred HHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhccccccCCe
Confidence 6899999999999999999999999999999999999999874 568999999999999999999999999995
No 17
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=99.77 E-value=1.6e-19 Score=130.02 Aligned_cols=75 Identities=15% Similarity=0.329 Sum_probs=62.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhh-hCCcccccccceEEe-ec----CceEEEcCCChHHHHHHHhCcCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAANYKENMFLID-IE----KQEFGLKPMNCPGHCLMFDHKVRSYRVLS 75 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~~~~~mf~~~-~~----~~~~~L~P~~c~~~~~~~~~~~~SYk~LP 75 (76)
+++++++.+.||++|.||.|.+.++|++ ||||+.|+++||++. ++ +++++|+||+|+.++.+|++.+.|||+||
T Consensus 52 ~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP 131 (477)
T 1hc7_A 52 QVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLP 131 (477)
T ss_dssp HHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCC
T ss_pred HHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCC
Confidence 6889999999999999999999999988 999999999999995 33 57899999999999999999999999999
Q ss_pred C
Q 035006 76 L 76 (76)
Q Consensus 76 l 76 (76)
+
T Consensus 132 ~ 132 (477)
T 1hc7_A 132 Q 132 (477)
T ss_dssp E
T ss_pred e
Confidence 5
No 18
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=99.76 E-value=8.2e-19 Score=125.66 Aligned_cols=75 Identities=16% Similarity=0.290 Sum_probs=70.0
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhh-hCCcccccccceEEeec-----CceEEEcCCChHHHHHHHhCcCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAANYKENMFLIDIE-----KQEFGLKPMNCPGHCLMFDHKVRSYRVLS 75 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~~~~~mf~~~~~-----~~~~~L~P~~c~~~~~~~~~~~~SYk~LP 75 (76)
+++++++.+.||++|.||.|.+.++|++ ||||+.|+++||.+... +++++|+||+|+.++.+|++.+.|||+||
T Consensus 46 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP 125 (459)
T 1nj8_A 46 EIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLP 125 (459)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCC
T ss_pred HHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCC
Confidence 6899999999999999999999999985 99999999999998533 57899999999999999999999999999
Q ss_pred C
Q 035006 76 L 76 (76)
Q Consensus 76 l 76 (76)
+
T Consensus 126 ~ 126 (459)
T 1nj8_A 126 I 126 (459)
T ss_dssp C
T ss_pred e
Confidence 6
No 19
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.76 E-value=2.7e-19 Score=128.18 Aligned_cols=75 Identities=43% Similarity=0.714 Sum_probs=72.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCC---CCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYR---VLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk---~LPl 76 (76)
+++++++.+.||++|.||.|.+.++|+.||||+.|+++||+++++++.++|+||+|+.++.+|++.+.||| +||+
T Consensus 57 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~ 134 (471)
T 3a32_A 57 EVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPF 134 (471)
T ss_dssp HHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSE
T ss_pred HHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhccccccCCe
Confidence 68899999999999999999999999999999999999999987788999999999999999999999999 9995
No 20
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=99.74 E-value=3.3e-19 Score=128.95 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=69.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhh-hCCcccccccceEEeec-----CceEEEcCCChHHHHHHHhCcCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAANYKENMFLIDIE-----KQEFGLKPMNCPGHCLMFDHKVRSYRVLS 75 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~~~~~mf~~~~~-----~~~~~L~P~~c~~~~~~~~~~~~SYk~LP 75 (76)
+++++++.+ ||++|.+|.|.+.++|++ ||||+.|+++||++... +++++|+||+|+.++.+|++.+.|||+||
T Consensus 79 ~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LP 157 (501)
T 1nj1_A 79 KILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLP 157 (501)
T ss_dssp HHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCC
T ss_pred HHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCC
Confidence 688999999 999999999999999988 99999999999999543 57899999999999999999999999999
Q ss_pred C
Q 035006 76 L 76 (76)
Q Consensus 76 l 76 (76)
+
T Consensus 158 l 158 (501)
T 1nj1_A 158 M 158 (501)
T ss_dssp E
T ss_pred E
Confidence 5
No 21
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.74 E-value=5.4e-19 Score=128.73 Aligned_cols=75 Identities=17% Similarity=0.362 Sum_probs=68.9
Q ss_pred hHHHHH-HHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe----e---------------------------cCce
Q 035006 2 EFIKKQ-YWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID----I---------------------------EKQE 49 (76)
Q Consensus 2 ~~ir~e-~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~----~---------------------------~~~~ 49 (76)
++++++ +.+.||++|.+|.|.+.++|++||||++|.++||.+. + ++++
T Consensus 239 ~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (522)
T 2cja_A 239 KIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPI 318 (522)
T ss_dssp HHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCCC
T ss_pred HHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccccccccccCCCc
Confidence 678875 7899999999999999999999999999999999983 1 3568
Q ss_pred EEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 50 FGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 50 ~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
++|+||+|+.++.+|++.+.||++||+
T Consensus 319 l~LrPt~e~~i~~~f~~~i~s~~~LPl 345 (522)
T 2cja_A 319 GGMCYAQCPPFWMYVAGETLPNEEIPV 345 (522)
T ss_dssp EEECSSSSGGGGGGTTTCEECGGGCSE
T ss_pred EEEccCCcHHHHHHHHhcccccccCCe
Confidence 999999999999999999999999995
No 22
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.71 E-value=2.3e-18 Score=120.32 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=61.0
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEee-------------------------cCceEEEcCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDI-------------------------EKQEFGLKPMN 56 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~-------------------------~~~~~~L~P~~ 56 (76)
+|+++ +.+.||+||.+|.|++.++|++||||++|.++||.+.. .+.+|+|+||+
T Consensus 72 ~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~~d~~LiPta 150 (346)
T 3mf2_A 72 ALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPAA 150 (346)
T ss_dssp HHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEEECSSS
T ss_pred HHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCCCCEEEcccc
Confidence 68888 88899999999999999999999999999999999732 13479999999
Q ss_pred hHHHHHHHhCc-CCC
Q 035006 57 CPGHCLMFDHK-VRS 70 (76)
Q Consensus 57 c~~~~~~~~~~-~~S 70 (76)
|+.++.+++++ ++|
T Consensus 151 cvpl~~~~~~eg~i~ 165 (346)
T 3mf2_A 151 CYPVYPIAASRGPLP 165 (346)
T ss_dssp STTHHHHHHTTCSCC
T ss_pred cHHHHHHHccCCccc
Confidence 99999999986 666
No 23
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.69 E-value=5.3e-18 Score=118.95 Aligned_cols=75 Identities=11% Similarity=0.151 Sum_probs=62.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhh--CCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCC-CCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETS--GHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSY-RVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~S--G~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SY-k~LPl 76 (76)
+++++++.+.||+||.||.|.+.++|+.| |||+.++++||++ +++|+.++|+||+|+.++.++++...|| ++||+
T Consensus 24 ~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~ 102 (420)
T 1qe0_A 24 NQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPI 102 (420)
T ss_dssp HHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTTGGGCSSCSE
T ss_pred HHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChHHHHHHHHhccccccCCCCe
Confidence 68899999999999999999999999999 9999999999998 5677899999999999999999989999 99995
No 24
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.69 E-value=3.1e-17 Score=115.22 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=70.4
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhh-CC-cccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETS-GH-AANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~S-G~-~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++++.+.||+||.||++.+.++|..| |+ |+.++++||++ +++|+.++|+|+.|+.++.++.+...|||+||+
T Consensus 25 ~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~ 102 (421)
T 1h4v_B 25 ATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPV 102 (421)
T ss_pred HHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchHHHHHHHHhccccccCCCe
Confidence 67899999999999999999999999999 99 99999999998 577899999999999999999887789999995
No 25
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.64 E-value=9.7e-17 Score=115.06 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=69.0
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhh-CC-cccccccceEE-eec-CceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETS-GH-AANYKENMFLI-DIE-KQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~S-G~-~~~~~~~mf~~-~~~-~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++.+.+.||++|.||+|.+.++|.+| || |+.++++||++ +++ |+.++|+|++|+.++.++.+...|| +||+
T Consensus 54 ~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~~~~-~lP~ 131 (467)
T 4e51_A 54 ATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPK 131 (467)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTTTTT-TSCE
T ss_pred HHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHccccc-CCCE
Confidence 67899999999999999999999999999 99 99999999998 566 8899999999999999999988999 6885
No 26
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.63 E-value=1.6e-16 Score=111.61 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=67.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhh-CC-cccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETS-GH-AANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~S-G~-~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++++.+.||+||.||++.+.++|..| |+ |+.++++||++ +++|+.++|+|+.|+.++.++.+. .+|++||+
T Consensus 26 ~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~aR~~~~~-~~~~~~P~ 102 (423)
T 1htt_A 26 GTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEH-GLLYNQEQ 102 (423)
T ss_dssp HHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHH-TCSTTCCE
T ss_pred HHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchHHHHHHHHhc-ccccCCCe
Confidence 67899999999999999999999999998 99 89999999999 577899999999999999988754 57999995
No 27
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.59 E-value=1e-16 Score=115.98 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=39.5
Q ss_pred hHHHHHHH--HcCCeEeeCCcccchhhhhhhCCcccccccceE
Q 035006 2 EFIKKQYW--DRGYQEVISPNMYNMKLWETSGHAANYKENMFL 42 (76)
Q Consensus 2 ~~ir~e~~--~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~ 42 (76)
+++|+++. +.||+||.||+|.+.++|+.||||++|+++||+
T Consensus 47 ~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f~d~m~~ 89 (505)
T 1ati_A 47 QAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVD 89 (505)
T ss_dssp HHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEEE
T ss_pred HHHHHHHHHhhCCcEEEEccccCCHHHHHhcCChhhcCcccee
Confidence 68999998 999999999999999999999999999999987
No 28
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.56 E-value=4.3e-15 Score=104.98 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=65.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhh-hCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWET-SGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~-SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+++++++.+.||+||.||++.+.++|.. ||| .++++||++ +++|+.++|+|+.|+.++.++.+. .|| +||+
T Consensus 28 ~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~g~~l~LrPd~t~~~aR~~~~~-~~~-~lP~ 100 (434)
T 1wu7_A 28 KTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKGGREVTLIPEATPSTVRMVTSR-KDL-QRPL 100 (434)
T ss_dssp HHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTTSCEEEECSCSHHHHHHHHTTC-TTC-CSSE
T ss_pred HHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCCCCEEEeCCCChHHHHHHHHhc-CCC-CCCe
Confidence 6789999999999999999999999998 799 789999998 577899999999999999999887 888 8885
No 29
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.52 E-value=2e-14 Score=99.78 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=66.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhh--CCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETS--GHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~S--G~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+.+++.+.+.||+||.||++.+.++|..| |+|+.++++||++ +++|+.++|+|+.|+.++.++.+. |+++|+
T Consensus 44 ~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~---~~~~P~ 118 (344)
T 1z7m_A 44 GRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQI---KDSTSA 118 (344)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTC---CSCCCE
T ss_pred HHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcHHHHHHHHhc---CCCCCe
Confidence 57899999999999999999999999997 9999999999998 577899999999999999998876 788884
No 30
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.43 E-value=1.3e-14 Score=108.42 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=38.7
Q ss_pred hHHHHHHH-HcCCeEeeCCcccchhhhhhhCCcccccccceEE
Q 035006 2 EFIKKQYW-DRGYQEVISPNMYNMKLWETSGHAANYKENMFLI 43 (76)
Q Consensus 2 ~~ir~e~~-~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~ 43 (76)
+++|+++. +.||+||.||+|.+.++|+.||||++|+++||+.
T Consensus 109 ~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~m~~~ 151 (693)
T 2zt5_A 109 QTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKD 151 (693)
T ss_dssp HHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEEEB
T ss_pred HHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCcccccccceee
Confidence 68899997 6799999999999999999999999999988854
No 31
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.41 E-value=1.7e-15 Score=108.68 Aligned_cols=75 Identities=9% Similarity=-0.062 Sum_probs=64.0
Q ss_pred hHHHHHH--HHcCCeEeeCCcccchhhhhhh--CC---ccccccc----------ceEE--eecCceEEEcCCChHHHHH
Q 035006 2 EFIKKQY--WDRGYQEVISPNMYNMKLWETS--GH---AANYKEN----------MFLI--DIEKQEFGLKPMNCPGHCL 62 (76)
Q Consensus 2 ~~ir~e~--~~~G~~ev~~P~l~~~~lw~~S--G~---~~~~~~~----------mf~~--~~~~~~~~L~P~~c~~~~~ 62 (76)
+++++++ .+.|+++|.+|++.+.++|++| || |++|+++ ||.+ +..++.++|+||+|++|+.
T Consensus 70 ~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRPeta~g~~~ 149 (454)
T 1g5h_A 70 SQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRATLLHGALE 149 (454)
T ss_dssp HHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECSCSHHHHHH
T ss_pred HHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecccccHHHHH
Confidence 5677775 5789999999999999999998 88 9999876 5543 1234579999999999999
Q ss_pred HHhCcCCCCC-CCCC
Q 035006 63 MFDHKVRSYR-VLSL 76 (76)
Q Consensus 63 ~~~~~~~SYk-~LPl 76 (76)
.|++..+||| +||+
T Consensus 150 ~f~~~~~s~r~~LP~ 164 (454)
T 1g5h_A 150 HYVNCLDLVNRKLPF 164 (454)
T ss_dssp THHHHHHHTTTBSCE
T ss_pred HHhhhHhhcccCCCE
Confidence 9999999999 9995
No 32
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=99.37 E-value=1.4e-13 Score=99.07 Aligned_cols=59 Identities=12% Similarity=-0.053 Sum_probs=49.6
Q ss_pred HHHHHHHHcC-CeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCC-CCCC
Q 035006 3 FIKKQYWDRG-YQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYR-VLSL 76 (76)
Q Consensus 3 ~ir~e~~~~G-~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk-~LPl 76 (76)
+.+.+..+.| +.+|.||+ .++|+.||||++|+ ++|+||+||.+...|++..+||| +||+
T Consensus 114 w~~~~~~~~~~~~eV~tp~---~~~~~~SGH~d~~~------------~~LRPeTaqg~~~nfk~~~~s~r~~LP~ 174 (459)
T 3ikl_A 114 WWTSVVVFREQVFPVDALH---HKPGPLLPGDSAFR------------GGLRENLLHGALEHYVNCLDLVNKRLPY 174 (459)
T ss_dssp HHHHHTTSSCSCEECCCCS---BCCSCCCSSCSCCT------------TB-CSCSHHHHHHHTTTTTGGGTTBSSE
T ss_pred HHHHHhhccCceEeecccc---ccccccCcchhhhc------------ceECCCCChhHHHHHhhhhhhccccCCe
Confidence 3344444466 66699999 77799999999998 88999999999999999999999 9995
No 33
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.35 E-value=4.9e-13 Score=93.78 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=63.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCccccc-ccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYK-ENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~-~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+.+++.+.+.||++|.||++.+.++|..|| +.+. ++||++ +++|+.++|+|++|+.++.++.+...+ +++|+
T Consensus 45 ~~i~~~f~~~Gy~eI~tP~le~~el~~~~g--~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~-~~~P~ 118 (373)
T 3rac_A 45 TRLLSFVEDAGYEPVTSGLFEYVDTLLRAR--SPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAA-GRTPI 118 (373)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEHHHHHTTS--CTTSCCCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHT-TCCCC
T ss_pred HHHHHHHHHcCCeEEECCceeeHHHHhhcC--CccchhceEEEECCCCCEEEECCcCHHHHHHHHHhcccc-CCCCe
Confidence 578899999999999999999999999998 5677 899998 677899999999999999998775443 67774
No 34
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.31 E-value=2.2e-12 Score=91.19 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=63.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+.+++.+.+.||++|.||++-+.++|.++| +.+.++||++ +++|+.++|+|+.|+.++.++.+.. .++++|+
T Consensus 32 ~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g--~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~-~~~~~P~ 104 (400)
T 3od1_A 32 DQMTEEINLWGYDMIETPTLEYYETVGVVS--AILDQQLFKLLDQQGNTLVLRPDMTAPIARLVASSL-KDRAYPL 104 (400)
T ss_dssp HHHHHHHHHTTCEECBCCSEEETTTHHHHS--SSCGGGSCEEECTTSCEEEECSCSHHHHHHHHHHHC-SSSCSCE
T ss_pred HHHHHHHHHcCCEEEeCCccccHHHHhhcC--CccccceEEEECCCCCEEEECCCCHHHHHHHHHhhc-ccCCCCe
Confidence 578899999999999999999999999998 7789999999 5778999999999999999887653 4678884
No 35
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.26 E-value=3.8e-12 Score=91.18 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=62.9
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhh-CCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETS-GHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~S-G~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+.+++.+.+.||+||.||++-+.++|..+ |++ +.++||++ +++|+.++|+|+.|+.++.++.+.. .++++|+
T Consensus 51 ~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~-~~~~~P~ 124 (456)
T 3lc0_A 51 DVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKGGHRVALRPEMTPSLARLLLGKG-RSLLLPA 124 (456)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSSSCEEEECSCSHHHHHHHHHHSC-TTCCSSE
T ss_pred HHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCCCCEEecCCcCHHHHHHHHHhcC-cccCCCE
Confidence 57889999999999999999999999864 985 78899998 5778999999999999999887764 4778884
No 36
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.19 E-value=2e-11 Score=83.18 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=58.3
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHhCcCCCCCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFDHKVRSYRVLSL 76 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~LPl 76 (76)
+.+++.+.+.||+||.||.|.+.++|..+|+|+. .+||.+ ...+++++|+|+.||.++.+++....+ +++|+
T Consensus 78 ~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~--~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~-~~~Pl 150 (288)
T 3dsq_A 78 EKLAKALHQQGFVQVVTPTIITKSALAKMTIGED--HPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERL-WDKPI 150 (288)
T ss_dssp HHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC----CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTT-SCSCE
T ss_pred HHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcc--cccEEeecccccchhhhhcChHHHHHHHHHHHhC-CCCCE
Confidence 6789999999999999999999999999999972 145432 111246899999999999988877777 88885
No 37
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=98.93 E-value=8.7e-10 Score=78.86 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=57.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-ee---------------cCceEEEcCCChHHHHHHHh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DI---------------EKQEFGLKPMNCPGHCLMFD 65 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~---------------~~~~~~L~P~~c~~~~~~~~ 65 (76)
+.+++.+.+.||++|.||++-..++|..+| +..+++||++ ++ .|+.++|+|+.|+.++.++.
T Consensus 34 ~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G--~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~ 111 (465)
T 3net_A 34 DTIRRVYESYGFTPIETPAVERLEVLQAKG--NQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIA 111 (465)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEHHHHHGGG--CC--CBEEEEEEEC----------------CCEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEeeccccccHHHHhccC--CCCccceEEEecccccccccccccccCCCCCEEEeCCCChHHHHHHHH
Confidence 567889999999999999999999999998 5554449998 45 26899999999999999887
Q ss_pred CcCCCCCCCCC
Q 035006 66 HKVRSYRVLSL 76 (76)
Q Consensus 66 ~~~~SYk~LPl 76 (76)
+.. ++.++|+
T Consensus 112 ~~~-~~~~~p~ 121 (465)
T 3net_A 112 RHL-NDLTFPF 121 (465)
T ss_dssp HHG-GGSCSSE
T ss_pred hcc-cccCCCe
Confidence 654 4666663
No 38
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=98.92 E-value=4.6e-10 Score=75.70 Aligned_cols=61 Identities=13% Similarity=0.236 Sum_probs=50.0
Q ss_pred hHHH--HHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChHHHHHHHhCcCCCCCC-CCC
Q 035006 2 EFIK--KQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDHKVRSYRV-LSL 76 (76)
Q Consensus 2 ~~ir--~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~~~~SYk~-LPl 76 (76)
+++| +...+.||++|.||++-+.++|.. + +|. +.+|+.++|+|++|+.|+ .+.. .|++ +|+
T Consensus 8 ~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~--------d-~f~-d~~g~~l~LRpd~T~~~a---~~~~-~~~~~~p~ 71 (275)
T 1usy_A 8 KVFSFYSKATKKGFSPFFVPALEKAEEPAG--------N-FFL-DRKGNLFSIREDFTKTVL---NHRK-RYSPDSQI 71 (275)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEEECSSCCS--------S-CEE-ETTSCEEEECCCHHHHHH---HHHT-TCTTCCCE
T ss_pred HHHHHHHHHHHCCCEEecCccccchhhhcc--------c-ccC-CCCCCEEEeCCcChHHHH---HHHh-hcCCCCce
Confidence 5677 899999999999999999999976 2 663 667899999999999999 3333 3777 774
No 39
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=98.90 E-value=1.3e-09 Score=76.99 Aligned_cols=62 Identities=8% Similarity=0.018 Sum_probs=50.0
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFD 65 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~ 65 (76)
+.+++++.+.||+||.||+|-+.++|..+. ....++||++ |++|+.++|+|..++.++-++.
T Consensus 36 ~~~~~~~~~~Gy~eI~tP~le~~el~~~~~--g~~~~~~y~f~D~~g~~l~LRPd~T~~~aR~~~ 98 (464)
T 4g84_A 36 DVIIRCFKRHGAEVIDTPVFELKETLMGKY--GEDSKLIYDLKDQGGELLSLRYDLTVPFARYLA 98 (464)
T ss_dssp HHHHHHHHHTTCEECBCCSEEEHHHHTTSC--C----CCCBBCCCSSCCEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEECcccCcHHHhcccc--CcCcceeEEEECCCCCEEEeCCcCcHHHHHHHH
Confidence 578999999999999999999999996543 3345789998 6788999999988888887654
No 40
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=78.92 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=49.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEE-eecCceEEEcCCChHHHHHHHh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLI-DIEKQEFGLKPMNCPGHCLMFD 65 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~-~~~~~~~~L~P~~c~~~~~~~~ 65 (76)
+.+++.+.++||+||.||+|-+.++|..+ +....++||++ |++|+.++|+|..++.++.++.
T Consensus 89 ~~i~~~~~~~Gy~eI~tP~lE~~el~~~~--~ge~~~~my~f~D~~g~~l~LRPd~T~~~aR~~~ 151 (517)
T 4g85_A 89 DVIIRCFKRHGAEVIDTPVFELKETLMGK--YGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLA 151 (517)
T ss_dssp HHHHHHHHHHTCEECBCCSEEEHHHHHCC--------CSCBBCCTTSCCEEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEECcccCcHHHhhcc--cCcCcceeEEEECCCCCEEEeCCcCcHHHHHHHH
Confidence 67899999999999999999999999654 33446789998 6778999999999999887664
No 41
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=98.23 E-value=2.5e-06 Score=57.68 Aligned_cols=62 Identities=26% Similarity=0.485 Sum_probs=51.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCccc--ccccceEEeecCceEEEcCCChHHHHHHHhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAAN--YKENMFLIDIEKQEFGLKPMNCPGHCLMFDH 66 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~--~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~ 66 (76)
+.+|+.+...||+||.||.+.+.+.|...|.+.. ..+++|.++ +.++|+|+..|.....++.
T Consensus 84 ~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~---~~~~LR~slsp~L~~~l~~ 147 (290)
T 3qtc_A 84 REITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVD---KNFCLRPMLTPNLYNYLRK 147 (290)
T ss_dssp HHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEET---TTEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeC---CCeeEcccChHHHHHHHHH
Confidence 5689999999999999999999999998887653 455677763 4799999999999876653
No 42
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=95.08 E-value=0.03 Score=40.44 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=35.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEc
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLK 53 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~ 53 (76)
+.+|+.+.+.||.||.||.|...+ +| -+.++|.+...++.++|.
T Consensus 186 ~~ir~~~~~~gF~EV~TPil~~~~----~~----~ga~~f~~~~~~~~~~L~ 229 (487)
T 1eov_A 186 ELFREYLATKKFTEVHTPKLLGAP----SE----GGSSVFEVTYFKGKAYLA 229 (487)
T ss_dssp HHHHHHHHHTTCEECCCCSEESSC----SS----SSSCCCEEEETTEEEEEC
T ss_pred HHHHHHHHhCCcEEEeCCEEEEec----CC----CCcccceeccCCccEEcc
Confidence 468999999999999999999864 22 244789887667788998
No 43
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=94.59 E-value=0.085 Score=35.57 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=37.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccch-hhhhhhCCcccccccceEEeecCceEEEcCCCh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM-KLWETSGHAANYKENMFLIDIEKQEFGLKPMNC 57 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~-~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c 57 (76)
+.+|+.+.+.||.||.||.|.+. ++...++-=+. .++|.+...+++++|....+
T Consensus 23 ~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~--a~~f~~~~~~~~~~L~~Spe 77 (294)
T 1nnh_A 23 EYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG--MEPAEVEIYGVKMRLTHSMI 77 (294)
T ss_dssp HHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC--CCCCEEEETTEEEEECSCSH
T ss_pred HHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc--ceeEEEEcCCCCEEeccChH
Confidence 46888999999999999999998 65544311112 46888754456788864433
No 44
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=94.52 E-value=0.041 Score=39.17 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=34.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEc
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLK 53 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~ 53 (76)
+.+|+.+.+.||.||.||.|... .+| -+.+||.++..++.++|.
T Consensus 143 ~~ir~~f~~~gF~eVeTP~l~~~----~~e----~~~~~f~~~~~~~~~~Lr 186 (434)
T 1x54_A 143 MAAREWLLKDGWHEVFPPILVTG----AVE----GGATLFKLKYFDKYAYLS 186 (434)
T ss_dssp HHHHHHHHHTTCEECCCCSEESC----CSS----CGGGCCEEEETTEEEEEC
T ss_pred HHHHHHHHHCCCEEEeCcEEEee----cCC----CCceeEEEeecCCcEEec
Confidence 46889999999999999999866 111 234788887667788888
No 45
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=94.20 E-value=0.07 Score=37.93 Aligned_cols=45 Identities=13% Similarity=0.263 Sum_probs=34.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKP 54 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P 54 (76)
+.+|+.+.+.||.||.||.|... .+| -+.+||.++..++.++|.-
T Consensus 142 ~~ir~ff~~~gF~eV~TP~l~~~----~~e----~~~~~f~~~~~~~~~~L~~ 186 (429)
T 1wyd_A 142 KAFRETLYKEGFIEIFTPKIIAS----ATE----GGAQLFPVIYFGKEAFLAQ 186 (429)
T ss_dssp HHHHHHHHHTTCEECCCCSEESS----CSS----TTCCCCEEEETTEEEEECS
T ss_pred HHHHHHHhhCCCEEEECCEEEee----CCC----CCceeEEEecCCceEEecC
Confidence 46888999999999999999876 111 2347888876677888973
No 46
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=93.25 E-value=0.11 Score=37.00 Aligned_cols=45 Identities=20% Similarity=0.471 Sum_probs=32.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKP 54 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P 54 (76)
+.+|+.+.+.||.||.||.|..... .| +.++|.++-.++.++|.-
T Consensus 140 ~~iR~ff~~~gFlEVeTPiL~~s~~---eG-----~~~~F~~~~~g~~~~L~~ 184 (435)
T 2xgt_A 140 RAMREHFYNAGYVEVAPPTLVQTQV---EG-----GSTLFNLDYFGEQSFLTQ 184 (435)
T ss_dssp HHHHHHHHHTTCEECCCCSEESCCS---SC-----TTSCCEEEETTEEEEECS
T ss_pred HHHHHHHHHCCCEEEECCeEeeccC---CC-----chhceeeccCCcccccCC
Confidence 5689999999999999999977643 23 234677665566677753
No 47
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=92.92 E-value=0.055 Score=38.40 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=16.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEc
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLK 53 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~ 53 (76)
+.+|+.+.+.||.||.||.|.... +| -+.+||.++..++.++|.
T Consensus 133 ~~ir~~f~~~gF~EV~TPil~~~~----~e----~~~~~f~~~~~g~~~~L~ 176 (422)
T 1n9w_A 133 RGFRRYLDRQDFTEIFTPKVVRAG----AE----GGSGLFGVDYFEKRAYLA 176 (422)
T ss_dssp HHHHHHHHHTTCEECCCC----------------------------------
T ss_pred HHHHHHHHHCCCEEEECCEEEEeC----CC----CCceeEEEeeCCCcEEee
Confidence 468889999999999999998761 11 223678776455677786
No 48
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=91.82 E-value=0.37 Score=34.34 Aligned_cols=49 Identities=12% Similarity=0.275 Sum_probs=35.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcCCChH
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKPMNCP 58 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~ 58 (76)
+.+|+.+.+.||.||.||.|.+... -| +.++|.++..++.++|.-..+-
T Consensus 145 ~~iR~f~~~~gF~EVeTPiL~~~~~---eg-----~~~~f~~~~~~~~~yL~~Spql 193 (438)
T 3nem_A 145 KAVRDFFHENGFIEIHTPKIIATAT---EG-----GTELFPMKYFEEDAFLAQSPQL 193 (438)
T ss_dssp HHHHHHHHHTTCEECCCCSEESSCS---SC-----SSSCCEEEETTEEEEECSCSHH
T ss_pred HHHHHHHHHCCcEEEeCCEEecCCC---CC-----CccceeEeeCCccEEEecChHH
Confidence 4689999999999999999988642 22 2356777655667777654443
No 49
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=91.07 E-value=0.24 Score=35.87 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=34.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe--ecCceEEEcCCCh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID--IEKQEFGLKPMNC 57 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~--~~~~~~~L~P~~c 57 (76)
+.||+.+.+.||.||.||.|.+. ..| -+.++|.+. ..+.+++|.-.-+
T Consensus 182 ~~iR~ff~~~gF~EVeTPiL~~~----~~G----a~a~~F~~~~~~~~~~~yLr~Spq 231 (493)
T 3a74_A 182 QSMRRYLDSHGYLEVETPMMHAV----AGG----AAARPFITHHNALDMTLYMRIAIE 231 (493)
T ss_dssp HHHHHHHHHTTCEECCCCSEESS----CCS----SSSCCCEEEETTTTEEEEECSCSH
T ss_pred HHHHHHHHhCCeEEEECCeEEec----CCC----CcccceEecccCCCceeEEecCHH
Confidence 46889999999999999999865 233 123678763 3466788874333
No 50
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=89.98 E-value=1.1 Score=31.01 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.4
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
+.||+.+.+.||.||.||.|.+..
T Consensus 44 ~~iR~ff~~~gF~EVeTPiL~~~~ 67 (345)
T 3a5y_A 44 AEIRRFFADRGVLEVETPCMSQAT 67 (345)
T ss_dssp HHHHHHHHHTTCEECCCCSEESSC
T ss_pred HHHHHHHHHCCCEEEECCEEEecC
Confidence 468999999999999999999764
No 51
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=89.95 E-value=0.3 Score=35.47 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=33.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe--ecCceEEEcCCCh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID--IEKQEFGLKPMNC 57 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~--~~~~~~~L~P~~c 57 (76)
+.||+.+.+.||.||.||.|.+. ..| -+.++|.+. ..+.+++|.-.-+
T Consensus 191 ~~iR~f~~~~gFlEVeTPiL~~~----~~G----a~ar~F~t~~~~~~~~~yL~~Spq 240 (504)
T 1e1o_A 191 AAIRQFMVARGFMEVETPMMQVI----PGG----ASARPFITHHNALDLDMYLRIAPE 240 (504)
T ss_dssp HHHHHHHHTTTCEECCCCSEESS----CCS----SCCCCCEEEETTTTEEEEECSCSH
T ss_pred HHHHHHHHHCCCEEEECCeEEec----CCC----CcccceEeccCCCCceEEeccCHH
Confidence 46899999999999999999865 233 123567663 3456777774433
No 52
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=89.32 E-value=0.47 Score=33.97 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=28.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEeecCceEEEcC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLIDIEKQEFGLKP 54 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~~~~~~~~L~P 54 (76)
+.||+.+.+.||.||.||.|..... + | +.++|.++--+..++|.-
T Consensus 164 ~~iR~ff~~~gF~EVeTPiL~~s~~-e--G-----g~~~f~~~~~~~~~~L~~ 208 (456)
T 3m4p_A 164 WYFRKYYHDNHFTEIQPPTIVKTQC-E--G-----GSTLFKLQYFNEPAYLTQ 208 (456)
T ss_dssp HHHHHHHHHTTCEECCCCSEEC--------------CCCCEEEETTEEEEECS
T ss_pred HHHHHHHHhCCCEEEeCCeeecCCC-C--C-----ccccccccccCCCccccc
Confidence 4689999999999999999976542 1 2 124566554455555544
No 53
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=82.74 E-value=0.74 Score=33.93 Aligned_cols=24 Identities=13% Similarity=0.407 Sum_probs=21.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
+.||+.+.+.||.||.||.|.+..
T Consensus 146 ~~iR~fl~~~gFlEVeTPiL~~s~ 169 (585)
T 1c0a_A 146 SLVRRFMDDHGFLDIETPMLTKAT 169 (585)
T ss_dssp HHHHHHHHHTTCEECCCCSSBCCC
T ss_pred HHHHHHHHhCCcEEEeCCEEecCC
Confidence 468999999999999999999653
No 54
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=82.50 E-value=0.78 Score=33.83 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=20.8
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.||+.+.+.||.||.||.|.+.
T Consensus 152 ~~iR~fl~~~gF~EVeTPiL~~s 174 (580)
T 1l0w_A 152 KAIWDFLDREGFVQVETPFLTKS 174 (580)
T ss_dssp HHHHHHHHHTTCEECCCCSSBCC
T ss_pred HHHHHHHHhCCcEEEeCCEEecC
Confidence 56899999999999999999965
No 55
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=80.60 E-value=8.5 Score=24.31 Aligned_cols=69 Identities=9% Similarity=0.159 Sum_probs=43.5
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe--ecCceEEEcCCChHHHHHHHh-CcCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID--IEKQEFGLKPMNCPGHCLMFD-HKVRSYR 72 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~--~~~~~~~L~P~~c~~~~~~~~-~~~~SYk 72 (76)
+-+|+.+...||+||.|-.+.+.+....-+..+. ++..++. ..++.=+|+++-=|.....++ |.-+..+
T Consensus 11 ~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~--~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~ 82 (213)
T 3ig2_A 11 NLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPS--KNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNA 82 (213)
T ss_dssp HHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCG--GGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------
T ss_pred HHHHHHHHHCCCeEEeccccCCHHHHHhhcccCc--CCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCC
Confidence 4688999999999999999999886544432211 2344552 234456789999999887553 4444333
No 56
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=80.42 E-value=0.98 Score=32.87 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=33.3
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe--ecCceEEEcCCChHH
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID--IEKQEFGLKPMNCPG 59 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~--~~~~~~~L~P~~c~~ 59 (76)
+.||+.+.+.||.||.||.|.+.. .| -..+.|.+. .-+.+++|.-+.+=.
T Consensus 184 ~~iR~f~~~~gF~EVeTPiL~~~~----gG----a~a~~F~t~~~~~~~~~yL~~SpqL~ 235 (521)
T 3bju_A 184 TYIRSFLDELGFLEIETPMMNIIP----GG----AVAKPFITYHNELDMNLYMRIAPELY 235 (521)
T ss_dssp HHHHHHHHHTTCEECCCCSEESSC----CS----SSCCCCEEEETTTTEEEEECSCSHHH
T ss_pred HHHHHHHHHCCCEEEeCceeeccC----CC----ccccceeeecccCCcceEeeCCHHHH
Confidence 468999999999999999998652 33 123456542 235567776554433
No 57
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Probab=80.16 E-value=0.7 Score=28.60 Aligned_cols=24 Identities=8% Similarity=0.249 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCeEeeCCcccchhh
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMKL 26 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~l 26 (76)
-+|+|+.+.||+|+.||-=+...+
T Consensus 18 pmR~ELt~~Gf~eL~T~e~Vd~a~ 41 (147)
T 3fhk_A 18 PMRRELTGAGFEELTTAEEVENFM 41 (147)
T ss_dssp HHHHHHHTTTCEECCSHHHHHHHH
T ss_pred HHHHHHHHhCccccCCHHHHHHHH
Confidence 479999999999999998776553
No 58
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=79.09 E-value=1.1 Score=32.71 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+.||+.+.+.||.||.||.|...
T Consensus 212 ~~iR~ff~~~gFlEVeTPiL~~~ 234 (529)
T 4ex5_A 212 ASIRKFMGDADFMEVETPMLHPI 234 (529)
T ss_dssp HHHHHHHHHTTCEECCCCSEESS
T ss_pred HHHHHHHHHCCCEEEeCCeeecc
Confidence 56899999999999999999854
No 59
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=78.17 E-value=1.3 Score=32.51 Aligned_cols=24 Identities=8% Similarity=0.288 Sum_probs=19.4
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
+.||+.+.+.||.||.||.|.+..
T Consensus 252 ~~iR~ff~~~gF~EVeTPiL~~~~ 275 (548)
T 3i7f_A 252 GLFREFLTSQKFVEIHTPKLIGCS 275 (548)
T ss_dssp HHHHHHHHHTTCEECCCCSBC---
T ss_pred HHHHHHHHhCCCEEEeCCEEeccc
Confidence 468999999999999999998874
No 60
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=76.57 E-value=4.4 Score=27.05 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=38.3
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhh-hhhhCCccccc-----ccceEEeecCceEEEcCCChHHHHHHHhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKL-WETSGHAANYK-----ENMFLIDIEKQEFGLKPMNCPGHCLMFDH 66 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~l-w~~SG~~~~~~-----~~mf~~~~~~~~~~L~P~~c~~~~~~~~~ 66 (76)
+-||+.+...||+||.+|.+.+... +..-+ .+.-. .+.|.+. +..+|+++.-|....+++.
T Consensus 60 ~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~-~~~~~par~~~d~~~l~---e~~vLRtsl~p~ll~~l~~ 126 (294)
T 2rhq_A 60 EEIEDLFLGLGYEIVDGYEVEQDYYNFEALN-LPKSHPARDMQDSFYIT---DEILMRTHTSPVQARTMEK 126 (294)
T ss_dssp HHHHHHHHTTTCEECCCCSEEEHHHHTGGGT-CCTTCGGGCTTTSCBSS---SSEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEcCcceeeehhhHHhhC-CCCCccccccCCcEEEc---CcceeeccCHHHHHHHHHh
Confidence 4678999999999998888876522 11211 11100 0124442 4578999999999876543
No 61
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=72.18 E-value=15 Score=25.34 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=39.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhh-hhhCCcccc-----cccceEEe-ec-----------CceEEEcCCChHHHHHH
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLW-ETSGHAANY-----KENMFLID-IE-----------KQEFGLKPMNCPGHCLM 63 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw-~~SG~~~~~-----~~~mf~~~-~~-----------~~~~~L~P~~c~~~~~~ 63 (76)
+-||+.+...||+||.+|.+.+...- ..-+ .+.. ..+.|.+. .. .+..+|++..-|....+
T Consensus 108 ~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~-~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~llr~ 186 (350)
T 1b7y_A 108 RELVEIFRALGYQAVEGPEVESEFFNFDALN-IPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRY 186 (350)
T ss_dssp HHHHHHHHTTTCEECCCCSEEEHHHHTTTTT-CCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHHHHH
T ss_pred HHHHHHHHHCCCEEEECcchhcchhHHHhhC-CCCCCccccccccEEEcCccccccccccccccccceeeccchHHHHHH
Confidence 45788999999999999998665211 1111 1111 02234443 11 25678999999998876
Q ss_pred HhC
Q 035006 64 FDH 66 (76)
Q Consensus 64 ~~~ 66 (76)
+..
T Consensus 187 l~~ 189 (350)
T 1b7y_A 187 MVA 189 (350)
T ss_dssp HHH
T ss_pred HHh
Confidence 643
No 62
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=71.80 E-value=14 Score=23.23 Aligned_cols=62 Identities=10% Similarity=0.122 Sum_probs=42.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe--ecCceEEEcCCChHHHHHHHh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID--IEKQEFGLKPMNCPGHCLMFD 65 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~--~~~~~~~L~P~~c~~~~~~~~ 65 (76)
+.+|+.+...||+||.|-.+.+.+....-+..+. ++..++. ..++-=+|+++-=|.....++
T Consensus 11 ~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~--~~~v~l~NPls~e~~vmRtsLlpgLL~~~~ 74 (213)
T 3ica_A 11 TVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPR--EMAVELMNPLSQELNCMRQTLLFGGLETLS 74 (213)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCG--GGCCBCSSBSCSSEEEECSSSHHHHHHHHH
T ss_pred HHHHHHHHHCCCceeeeccCCCHHHHhhhcccCc--CCeEEecCCccHHHHHHHHHhHHHHHHHHH
Confidence 4688999999999999999999886554432211 2333442 234456789998888887553
No 63
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=61.49 E-value=4.8 Score=30.01 Aligned_cols=23 Identities=9% Similarity=0.362 Sum_probs=19.3
Q ss_pred hHHHHHHH-HcCCeEeeCCcccch
Q 035006 2 EFIKKQYW-DRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~-~~G~~ev~~P~l~~~ 24 (76)
+.||+.+. +.||.||.||.|...
T Consensus 156 ~~iR~f~~~~~gF~EVeTPiL~~s 179 (617)
T 4ah6_A 156 MKMREYLCNLHGFVDIETPTLFKR 179 (617)
T ss_dssp HHHHHHHHTTSCCEECCCCSSBCC
T ss_pred HHHHHHHHhcCCeEEEeCCeeccC
Confidence 46788885 689999999999864
No 64
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=58.98 E-value=18 Score=26.52 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=40.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhh-hhhhCCcccccccceEEe--ecCceEEEcCCChHHHHHHHh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKL-WETSGHAANYKENMFLID--IEKQEFGLKPMNCPGHCLMFD 65 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~l-w~~SG~~~~~~~~mf~~~--~~~~~~~L~P~~c~~~~~~~~ 65 (76)
+.+|+.+...||+|+.++.+.+.+. ...-+.-.. ..+.+.+. ...+-=+|+++-=|.....++
T Consensus 398 ~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~-~~~~v~L~NPis~e~svmRtsLlpgLL~~l~ 463 (589)
T 3l4g_B 398 ELLRHDMAAAGFTEALTFALCSQEDIADKLGVDIS-ATKAVHISNPKTAEFQVARTTLLPGLLKTIA 463 (589)
T ss_dssp HHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTT-SSCCCBBSSCSSGGGSEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCC-CCCeEEEcCCCchhHhHHHHHHHHHHHHHHH
Confidence 4578899999999999999998863 222221111 12344442 122345789998899887654
No 65
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=47.00 E-value=12 Score=27.55 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=21.3
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK 25 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~ 25 (76)
+-+|+.+...||+|+.+|.+.+..
T Consensus 54 ~~Ir~~l~~lGF~Ev~~~s~~s~~ 77 (534)
T 2du3_A 54 QRLREAYLSIGFSEVVNPLIVEDV 77 (534)
T ss_dssp HHHHHHHHHTTCEECCCCCEEETH
T ss_pred HHHHHHHHHCCCEEEeCceEeChh
Confidence 457889999999999999999875
No 66
>2pww_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.82A {Bacillus clausii} SCOP: d.129.11.1
Probab=41.02 E-value=33 Score=20.53 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccce--EEeecCceEEEc
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMF--LIDIEKQEFGLK 53 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf--~~~~~~~~~~L~ 53 (76)
.+++.|...||. .+|.|+ |.--.| +++..+..|+|+
T Consensus 19 ~Ld~~m~~~Gfv--------------~~G~WD-Yer~tfD~K~~~~~g~~yLR 56 (127)
T 2pww_A 19 IVNHAAKSLGFI--------------HVDQWD-YERVMFDYKIVHHEGTFYLR 56 (127)
T ss_dssp HHHHHHHHTTCE--------------ECSCCC-SSEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHCCcE--------------ecCCcc-ccceEeEEEEEccCCEEEEE
Confidence 456677777775 589997 322233 444445466664
No 67
>2r5x_A Protein YUGN, uncharacterized conserved protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.04A {Geobacillus kaustophilus}
Probab=39.64 E-value=45 Score=19.96 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccce--EEeecCceEEEc
Q 035006 3 FIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMF--LIDIEKQEFGLK 53 (76)
Q Consensus 3 ~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf--~~~~~~~~~~L~ 53 (76)
.+++.|...||. .+|.|+ |.--.| +++..+..|+|+
T Consensus 19 ~Ld~~m~~~Gfv--------------~~G~WD-Yer~tfD~K~~~~~g~~yLR 56 (129)
T 2r5x_A 19 RLDDIMERLGFV--------------RAAQWD-YERVTYDRKYVVKEGTYYLR 56 (129)
T ss_dssp HHHHHHHHTTCE--------------EECTTC-SSEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHCCcE--------------ecCCcc-ccceEeEEEEEccCCEEEEE
Confidence 456677777775 579997 322233 444445466664
No 68
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=33.17 E-value=23 Score=26.08 Aligned_cols=31 Identities=23% Similarity=0.562 Sum_probs=22.7
Q ss_pred hHHHHHHHHcCCeEeeCCcccchh-hhhhhCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMK-LWETSGH 32 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~-lw~~SG~ 32 (76)
+-+|+.+...||+|+..|.+.+.. ...+.||
T Consensus 64 ~~ir~~f~~mGF~e~~~p~ies~~~n~pq~gh 95 (549)
T 2du7_A 64 ERLRQAYLRMGFEEMINPVIVDEMEIYKQFGP 95 (549)
T ss_dssp HHHHHHHHTTTCEECCCCSCEEHHHHHHHTCT
T ss_pred HHHHHHHHHCCCEEeeCCeEeehHHhCCCcCC
Confidence 457889999999999999996543 2234444
No 69
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=29.95 E-value=33 Score=26.14 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=41.1
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCccccccc-ceEEe--ecCceEEEcCCChHHHHHHHh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKEN-MFLID--IEKQEFGLKPMNCPGHCLMFD 65 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~-mf~~~--~~~~~~~L~P~~c~~~~~~~~ 65 (76)
+-+|+.+...||+|+.+..+.+.+.+..-+ + ..+ .+.+. ..++.-+|+++-=|.....++
T Consensus 500 ~~ir~~L~~~Gf~Evitysfvs~~~~~~l~--~--~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~ 562 (795)
T 2rhq_B 500 RTLKETLEGAGLNQAITYSLVSKDHAKDFA--L--QERPTISLLMPMSEAHATLRQSLLPHLIEATA 562 (795)
T ss_dssp HHHHHHHHHTTCEECCCCSEECTTTTTTTC--S--SCCCCEECSSCSCTTSSEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEecCCccCHHHHHhhC--C--CCCceEEEcCCCchhhhhhhhccHHHHHHHHH
Confidence 457889999999999999998887663211 2 233 35552 223345789998888887554
No 70
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=29.61 E-value=1.2e+02 Score=23.15 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=41.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe--ecCceEEEcCCChHHHHHHHh
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID--IEKQEFGLKPMNCPGHCLMFD 65 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~--~~~~~~~L~P~~c~~~~~~~~ 65 (76)
+.+|+.+...||+|+.+-.+.+.+.+.. ++. ..+-+.+. ...+.-+|+++-=|.....++
T Consensus 496 ~~ir~~L~~~Gf~Evitysfvs~~~~~~---l~~-~~~~v~L~NPis~d~svLRtsLlpgLL~~l~ 557 (785)
T 1b7y_B 496 QRLREVLSGLGFQEVYTYSFMDPEDARR---FRL-DPPRLLLLNPLAPEKAALRTHLFPGLVRVLK 557 (785)
T ss_dssp HHHHHHHHHHTCEECCCCSEECTTHHHH---TTC-CCCSCEESSCSSTTSSEECSCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEecCcccCHHHHHh---cCC-CCCeEEEcCCCchhhhhhhhhhHHHHHHHHH
Confidence 4578899999999999988888876632 221 23335553 233445789998888887554
No 71
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=28.97 E-value=33 Score=25.90 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=19.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+-||+.+...||+|+..|.+.+.
T Consensus 72 ~~IR~if~~mGF~E~~~p~vese 94 (648)
T 2odr_B 72 ENLRQAYLRMGFEEYINPVIVDE 94 (648)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHCCCEEeeCCEEeeh
Confidence 45889999999999999999643
No 72
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=28.49 E-value=34 Score=25.91 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=19.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+-||+.+...||+|+..|.+.+.
T Consensus 72 ~~IR~if~~mGF~E~~~p~vese 94 (665)
T 2odr_A 72 ENLRQAYLRMGFEEYINPVIVDE 94 (665)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHCCCEEeeCCEEeee
Confidence 45889999999999999999643
No 73
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=28.06 E-value=35 Score=25.94 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=19.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+-||+.+...||+|+..|.+.+.
T Consensus 72 ~~IReif~~mGF~E~~~p~vese 94 (685)
T 2odr_D 72 ENLRQAYLRMGFEEYINPVIVDE 94 (685)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHCCCEEeeCCEEeeh
Confidence 45889999999999999999643
No 74
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=27.76 E-value=35 Score=25.97 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=19.6
Q ss_pred hHHHHHHHHcCCeEeeCCcccch
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNM 24 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~ 24 (76)
+-||+.+...||+|+..|.+.+.
T Consensus 72 ~~IReif~~mGF~Ev~~p~Vese 94 (701)
T 2odr_C 72 ENLRQAYLRMGFEEYINPVIVDE 94 (701)
T ss_dssp HHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHCCCEEeeCCEEeee
Confidence 45889999999999999999643
No 75
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=26.68 E-value=29 Score=23.72 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=36.2
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhh-hh----hhCCcccccccceEEeecCceEEEcCCChHHHHHHHhC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKL-WE----TSGHAANYKENMFLIDIEKQEFGLKPMNCPGHCLMFDH 66 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~l-w~----~SG~~~~~~~~mf~~~~~~~~~~L~P~~c~~~~~~~~~ 66 (76)
+-|++.+...||+++.+|.+....- .. ...|-..-..+.|.+. +.-+|+...-|.....+..
T Consensus 114 ~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~---e~~vLRThtsp~~lr~l~~ 180 (327)
T 3pco_A 114 DRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD---TTRLLRTQTSGVQIRTMKA 180 (327)
T ss_dssp HHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS---SSCEECSCTHHHHHHHHTT
T ss_pred HHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC---CCceecccCCHHHHHHHHh
Confidence 4578889999999999998754311 00 0111000001123332 3467898888888877654
No 76
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=24.92 E-value=22 Score=21.61 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=12.5
Q ss_pred hhhhhhhCCcccccccc
Q 035006 24 MKLWETSGHAANYKENM 40 (76)
Q Consensus 24 ~~lw~~SG~~~~~~~~m 40 (76)
.++=..+|.||.|+.+-
T Consensus 61 ~Di~nTTG~WDlYG~D~ 77 (144)
T 2wsc_H 61 EDIANTTGQWDVYGSDA 77 (144)
T ss_dssp SCCCCSSCTTSSCCSSC
T ss_pred hhcccccccceeccccC
Confidence 44557899999887653
No 77
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=24.43 E-value=1.4e+02 Score=22.82 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=44.3
Q ss_pred hHHHHHHHHcCCeEeeCCcccchhhhhhhCCcccccccceEEe--ecCceEEEcCCChHHHHHHHh-CcCCCCC
Q 035006 2 EFIKKQYWDRGYQEVISPNMYNMKLWETSGHAANYKENMFLID--IEKQEFGLKPMNCPGHCLMFD-HKVRSYR 72 (76)
Q Consensus 2 ~~ir~e~~~~G~~ev~~P~l~~~~lw~~SG~~~~~~~~mf~~~--~~~~~~~L~P~~c~~~~~~~~-~~~~SYk 72 (76)
+.+|+.+...||+|+.+=.+.+.+....-|- .++..++. ..++-=+|+++-=|.....++ |..+..+
T Consensus 496 ~~~r~~l~~~G~~Evitysf~~~~~~~~~~~----~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~ 565 (795)
T 3pco_B 496 KRVKTLLNDKGYQEVITYSFVDPKVQQMIHP----GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQN 565 (795)
T ss_dssp HHHHHHHHHTTCEECCCCSEECHHHHHHHSS----SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHCCCeeeeccCcCCHHHHHhhCC----CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4678999999999999999999887665541 12333332 223345688888888877543 3444443
No 78
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=23.76 E-value=20 Score=20.56 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=12.6
Q ss_pred EEcCCChHHHHHHHh
Q 035006 51 GLKPMNCPGHCLMFD 65 (76)
Q Consensus 51 ~L~P~~c~~~~~~~~ 65 (76)
+|||.|+|..+.+.+
T Consensus 11 VlKP~h~P~ivd~A~ 25 (96)
T 2x3d_A 11 VLKPIRGTSIVDLAE 25 (96)
T ss_dssp EEEESSSSCHHHHHH
T ss_pred cccCCCCCCHHHHHH
Confidence 469999999998765
Done!