Query 035011
Match_columns 76
No_of_seqs 103 out of 682
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 08:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1773 Stress responsive prot 99.9 6.3E-28 1.4E-32 147.2 5.5 61 1-61 1-61 (63)
2 COG0401 Uncharacterized homolo 99.9 4.4E-26 9.5E-31 136.1 4.9 55 4-58 2-56 (56)
3 PF01679 Pmp3: Proteolipid mem 99.9 1.1E-23 2.3E-28 123.7 3.2 50 7-57 2-51 (51)
4 PF14373 Imm_superinfect: Supe 89.5 0.39 8.4E-06 27.2 2.3 23 30-52 18-42 (43)
5 PF07123 PsbW: Photosystem II 77.3 1.4 3.1E-05 30.6 1.4 26 36-61 104-129 (138)
6 PLN00077 photosystem II reacti 76.2 1.8 3.8E-05 29.8 1.5 30 36-65 93-122 (128)
7 PLN00082 photosystem II reacti 75.9 1.9 4.2E-05 26.6 1.5 26 37-62 33-58 (67)
8 PLN00092 photosystem I reactio 72.3 2.6 5.6E-05 29.2 1.6 26 37-62 104-129 (137)
9 PF11298 DUF3099: Protein of u 52.6 9.5 0.00021 23.6 1.4 20 8-27 45-64 (73)
10 cd01784 rasfadin_RA Ubiquitin- 43.8 9.2 0.0002 24.7 0.4 59 14-73 5-68 (87)
11 PF09964 DUF2198: Uncharacteri 42.2 20 0.00044 22.5 1.7 45 10-55 2-50 (74)
12 PF05478 Prominin: Prominin; 41.4 16 0.00034 30.9 1.5 29 32-60 769-797 (806)
13 COG4665 FcbT2 TRAP-type mannit 41.2 28 0.00061 25.2 2.6 26 31-56 89-114 (182)
14 KOG4753 Predicted membrane pro 35.4 15 0.00032 25.2 0.4 30 30-59 81-110 (124)
15 KOG4040 NADH:ubiquinone oxidor 34.6 38 0.00082 24.5 2.3 27 33-59 127-153 (186)
16 PRK10525 cytochrome o ubiquino 33.9 53 0.0011 25.3 3.2 29 33-61 44-72 (315)
17 PF05393 Hum_adeno_E3A: Human 32.9 33 0.00071 22.5 1.7 10 65-74 59-68 (94)
18 CHL00186 psaI photosystem I su 30.9 28 0.00061 19.1 0.9 25 36-60 8-33 (36)
19 TIGR03052 PS_I_psaI photosyste 28.2 23 0.00051 18.8 0.3 23 38-60 7-30 (31)
20 COG4897 CsbA Uncharacterized p 28.1 42 0.0009 21.3 1.5 46 10-56 3-52 (78)
21 PF06024 DUF912: Nucleopolyhed 25.9 1.2E+02 0.0026 19.3 3.4 9 47-55 76-84 (101)
22 PF04505 Dispanin: Interferon- 25.1 28 0.0006 21.5 0.3 31 30-60 16-46 (82)
23 PF03669 UPF0139: Uncharacteri 23.9 32 0.0007 22.4 0.4 34 9-45 34-67 (103)
24 TIGR02230 ATPase_gene1 F0F1-AT 22.2 58 0.0013 21.3 1.4 37 21-58 63-99 (100)
25 PF04246 RseC_MucC: Positive r 21.5 53 0.0011 21.4 1.1 53 7-60 66-119 (135)
26 PRK13823 conjugal transfer pro 21.4 1.1E+02 0.0023 19.7 2.5 31 30-61 39-69 (94)
27 PF05915 DUF872: Eukaryotic pr 21.0 52 0.0011 21.8 1.0 27 30-56 73-99 (115)
28 cd01782 AF6_RA_repeat1 Ubiquit 20.9 33 0.00072 23.1 0.0 25 49-73 70-94 (112)
No 1
>KOG1773 consensus Stress responsive protein [General function prediction only]
Probab=99.95 E-value=6.3e-28 Score=147.23 Aligned_cols=61 Identities=49% Similarity=0.921 Sum_probs=59.6
Q ss_pred CCcchHHHHHHHHHhhcchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhhheeeeeCcc
Q 035011 1 MPSCCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDRD 61 (76)
Q Consensus 1 m~~~~~~~~~~ilai~lPPlaV~l~~g~~~~~~~In~lLtllg~iPg~ihA~yii~~~~~~ 61 (76)
|++|+++++++++|+|+||+||++++|.|++|++||++||++||+||+|||+|++++++|+
T Consensus 1 m~~~~~~~~~iilai~lPP~aV~l~~g~C~~~~~InilL~~L~~iPgiIhA~yii~~~~r~ 61 (63)
T KOG1773|consen 1 MATDCDDILLIILAIFLPPLAVFLRRGGCTVDVLINILLTLLGFIPGIIHAIYIIFFRGRE 61 (63)
T ss_pred CCCcHHHHHHHHHHHHcCchheeeecCCCchhhHHHHHHHHHHHhHHHHhhEEEEEEecCC
Confidence 7899999999999999999999999999999999999999999999999999999999986
No 2
>COG0401 Uncharacterized homolog of Blt101 [Function unknown]
Probab=99.93 E-value=4.4e-26 Score=136.15 Aligned_cols=55 Identities=49% Similarity=0.790 Sum_probs=52.4
Q ss_pred chHHHHHHHHHhhcchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhhheeeee
Q 035011 4 CCEICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFV 58 (76)
Q Consensus 4 ~~~~~~~~ilai~lPPlaV~l~~g~~~~~~~In~lLtllg~iPg~ihA~yii~~~ 58 (76)
+..|++++++|+|+||++|++++|.|++|+++|++||++||+||++||+|++.++
T Consensus 2 ~~~d~~~iilaiflPP~~VfL~~G~~~~df~iNiLLtlLg~~PGiiHA~yvi~~~ 56 (56)
T COG0401 2 TLMDFIRIVLAIFLPPLGVFLRRGFGGKDFLINILLTLLGYIPGIIHALYVILRD 56 (56)
T ss_pred cHHHHHHHHHHHHcCchhhhhhccCCcHHHHHHHHHHHHHhhhhhHhheEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999764
No 3
>PF01679 Pmp3: Proteolipid membrane potential modulator; InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane
Probab=99.88 E-value=1.1e-23 Score=123.74 Aligned_cols=50 Identities=54% Similarity=0.931 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhhheeee
Q 035011 7 ICCEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVF 57 (76)
Q Consensus 7 ~~~~~ilai~lPPlaV~l~~g~~~~~~~In~lLtllg~iPg~ihA~yii~~ 57 (76)
|++++++|+++||+||++++| |++|+++|++||++||+||++||+|++++
T Consensus 2 ~~~~~ilai~lPPlaV~~~~g-~~~~~~inl~Ltl~g~iPg~ihA~y~i~~ 51 (51)
T PF01679_consen 2 DILLIILAIFLPPLAVFLKKG-CSKDFWINLLLTLLGWIPGVIHALYVIYK 51 (51)
T ss_pred cHHHHHHHHHcccHHHHHHcC-CchhhHHHHHHHHHHHHHHHHHeeEEEeC
Confidence 689999999999999999999 99999999999999999999999999864
No 4
>PF14373 Imm_superinfect: Superinfection immunity protein
Probab=89.46 E-value=0.39 Score=27.21 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=19.6
Q ss_pred ChhHHHHHHH--HHHHhhhhhhhhh
Q 035011 30 TVEFCICLLL--TILGYVPGIIYAL 52 (76)
Q Consensus 30 ~~~~~In~lL--tllg~iPg~ihA~ 52 (76)
..=+++|++| |.+||+-+.++|+
T Consensus 18 ~~I~~~Nl~lGWT~iGWv~aLiwA~ 42 (43)
T PF14373_consen 18 WAIFLLNLLLGWTGIGWVAALIWAL 42 (43)
T ss_pred hhhHhHHHHHHhHHHHHHHHHHHhc
Confidence 4457899998 9999999999885
No 5
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=77.35 E-value=1.4 Score=30.64 Aligned_cols=26 Identities=38% Similarity=0.346 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhhhhhhheeeeeCcc
Q 035011 36 CLLLTILGYVPGIIYALYAIVFVDRD 61 (76)
Q Consensus 36 n~lLtllg~iPg~ihA~yii~~~~~~ 61 (76)
|++-+++.-++|.||++|.++.+.=+
T Consensus 104 ~~LgwIL~gVf~lIWslY~~~~~~l~ 129 (138)
T PF07123_consen 104 NLLGWILLGVFGLIWSLYFVYTSTLD 129 (138)
T ss_pred chhHHHHHHHHHHHHHHHHhhccccC
Confidence 45557777789999999999876644
No 6
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=76.16 E-value=1.8 Score=29.77 Aligned_cols=30 Identities=37% Similarity=0.279 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhhhhhhhheeeeeCcchhhh
Q 035011 36 CLLLTILGYVPGIIYALYAIVFVDRDEYFD 65 (76)
Q Consensus 36 n~lLtllg~iPg~ihA~yii~~~~~~~~~~ 65 (76)
|.+-+++.-+++.||++|.++++.-++..+
T Consensus 93 ~~LgwIL~gVf~liw~ly~~~~~~l~~~ed 122 (128)
T PLN00077 93 NLLGWILLGVFGLIWSLYTTYTSDLPEDEE 122 (128)
T ss_pred chhhHHHHhHHHHHHHHHhheecccCCccc
Confidence 344477777899999999998776554433
No 7
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=75.89 E-value=1.9 Score=26.64 Aligned_cols=26 Identities=35% Similarity=0.240 Sum_probs=19.6
Q ss_pred HHHHHHHhhhhhhhhhheeeeeCcch
Q 035011 37 LLLTILGYVPGIIYALYAIVFVDRDE 62 (76)
Q Consensus 37 ~lLtllg~iPg~ihA~yii~~~~~~~ 62 (76)
.+-+++.-+++.|+++|.++.+.-++
T Consensus 33 ~LgwIL~gvf~liw~ly~~~~~~l~~ 58 (67)
T PLN00082 33 KLTWILVGVTALIWALYFSYSSTLPE 58 (67)
T ss_pred hhhhHHHHHHHHHHHHHhheecccCC
Confidence 44466677899999999997665544
No 8
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=72.26 E-value=2.6 Score=29.23 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=19.9
Q ss_pred HHHHHHHhhhhhhhhhheeeeeCcch
Q 035011 37 LLLTILGYVPGIIYALYAIVFVDRDE 62 (76)
Q Consensus 37 ~lLtllg~iPg~ihA~yii~~~~~~~ 62 (76)
.+-+++.-+++.||++|.++...-++
T Consensus 104 ~LgwIL~gVf~lIWslYf~~~~~l~e 129 (137)
T PLN00092 104 LLGWILLGVFGLIWSLYFVYTSTLEE 129 (137)
T ss_pred chhhHHHhHHHHHHHHHheeecccCc
Confidence 44467777899999999998765443
No 9
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=52.60 E-value=9.5 Score=23.64 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=15.2
Q ss_pred HHHHHHHhhcchheeehhhc
Q 035011 8 CCEILIAILLPPLGVCLKHG 27 (76)
Q Consensus 8 ~~~~ilai~lPPlaV~l~~g 27 (76)
+..+..|+++|++||.+-.+
T Consensus 45 ~~~~~~av~LPwvAVviAN~ 64 (73)
T PF11298_consen 45 WAIIVGAVPLPWVAVVIANA 64 (73)
T ss_pred HHHHHHhcccchhheeeccC
Confidence 45667788999999988654
No 10
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=43.76 E-value=9.2 Score=24.69 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=37.2
Q ss_pred Hhhcchhe----eehhhcCCChhHHHHHHHHHHHh-hhhhhhhhheeeeeCcchhhhhcCccccC
Q 035011 14 AILLPPLG----VCLKHGCCTVEFCICLLLTILGY-VPGIIYALYAIVFVDRDEYFDEYRRPLYA 73 (76)
Q Consensus 14 ai~lPPla----V~l~~g~~~~~~~In~lLtllg~-iPg~ihA~yii~~~~~~~~~~~~~Rp~~~ 73 (76)
++|+|+.+ |-+... -+.+=+|+.+|-=+-- --.-=+|+|.+......++-.+.|+|++.
T Consensus 5 S~f~P~~gs~~~v~VsS~-~tt~eVI~~LL~KFkv~~~p~~FALy~vh~~Ge~rkL~d~E~PL~~ 68 (87)
T cd01784 5 SVFTPAYGSVTNVRINST-MTTPQVLKLLLNKFKIENSAEEFALYIVHTSGEKRKLKATDYPLIA 68 (87)
T ss_pred cEeCCCCCceeEEEEecC-CCHHHHHHHHHHhccccCCHHHeEEEEEeeCCCEEECCCcCCCeeh
Confidence 56777733 333333 3555567776632211 22245799999888877888999999875
No 11
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=42.16 E-value=20 Score=22.52 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=32.1
Q ss_pred HHHHHhhcchheeehhhcCCChhHHHHHHHHHHH----hhhhhhhhhhee
Q 035011 10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILG----YVPGIIYALYAI 55 (76)
Q Consensus 10 ~~ilai~lPPlaV~l~~g~~~~~~~In~lLtllg----~iPg~ihA~yii 55 (76)
.+++|.++|=+-|.+-.. .+.+-++-.+||+.. ..-|.-|.+|++
T Consensus 2 ~~~~Al~~P~lLVvlFtr-VT~n~~vg~~lt~~Li~ASvykGyt~~~~ii 50 (74)
T PF09964_consen 2 KYLLALFFPCLLVVLFTR-VTYNHYVGTILTVALIAASVYKGYTHTWWII 50 (74)
T ss_pred HHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 468999999999988777 577778888887654 244455555544
No 12
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=41.36 E-value=16 Score=30.92 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhhheeeeeCc
Q 035011 32 EFCICLLLTILGYVPGIIYALYAIVFVDR 60 (76)
Q Consensus 32 ~~~In~lLtllg~iPg~ihA~yii~~~~~ 60 (76)
-||.++.++.+.++|++|.|.-+...|.+
T Consensus 769 ~fWf~l~~c~~~liP~ii~avkL~k~yrr 797 (806)
T PF05478_consen 769 GFWFGLGWCTLFLIPSIIFAVKLAKYYRR 797 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 47999999999999999999988654443
No 13
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.20 E-value=28 Score=25.24 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhheee
Q 035011 31 VEFCICLLLTILGYVPGIIYALYAIV 56 (76)
Q Consensus 31 ~~~~In~lLtllg~iPg~ihA~yii~ 56 (76)
.+.|++++.|+++.+|+.+.-+|.-.
T Consensus 89 ~qa~vDllGtifFLlPfc~l~iy~~~ 114 (182)
T COG4665 89 TQAWVDLLGTIFFLLPFCLLVIYLSW 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 58899999999999999998888754
No 14
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=35.35 E-value=15 Score=25.21 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhheeeeeC
Q 035011 30 TVEFCICLLLTILGYVPGIIYALYAIVFVD 59 (76)
Q Consensus 30 ~~~~~In~lLtllg~iPg~ihA~yii~~~~ 59 (76)
+.+-.+-+++-++.++||.-|..++-+-.+
T Consensus 81 ~~~gv~f~V~G~L~FiPGfYh~riayyA~K 110 (124)
T KOG4753|consen 81 RSQGVFFFVLGILLFIPGFYHTRIAYYAYK 110 (124)
T ss_pred CcceEEEehhhhHhcccchheEeeEEEeec
Confidence 455666678888999999999888765444
No 15
>KOG4040 consensus NADH:ubiquinone oxidoreductase, NDUFB8/ASHI subunit [Energy production and conversion]
Probab=34.58 E-value=38 Score=24.54 Aligned_cols=27 Identities=19% Similarity=0.184 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhheeeeeC
Q 035011 33 FCICLLLTILGYVPGIIYALYAIVFVD 59 (76)
Q Consensus 33 ~~In~lLtllg~iPg~ihA~yii~~~~ 59 (76)
-|-+++.+++|.+|+.+.|+|+.-.++
T Consensus 127 ~w~~~~mcl~g~~~~~l~~~y~~d~~p 153 (186)
T KOG4040|consen 127 TWNSIVMCLRGLVPMALLAWYFTDEHP 153 (186)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 367788999999999999999975443
No 16
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=33.94 E-value=53 Score=25.32 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhheeeeeCcc
Q 035011 33 FCICLLLTILGYVPGIIYALYAIVFVDRD 61 (76)
Q Consensus 33 ~~In~lLtllg~iPg~ihA~yii~~~~~~ 61 (76)
+++.+.+.++.++|-++-++|...++.++
T Consensus 44 i~~~~~~~liv~i~V~~l~~~f~~ryR~~ 72 (315)
T PRK10525 44 ILTAFGLMLIVVIPAILMAVGFAWKYRAS 72 (315)
T ss_pred HHHHHHHHHhhHHHHHHHHheeEEEEecC
Confidence 55667778888999998888888777653
No 17
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=32.86 E-value=33 Score=22.48 Aligned_cols=10 Identities=50% Similarity=1.119 Sum_probs=6.2
Q ss_pred hhcCccccCC
Q 035011 65 DEYRRPLYAP 74 (76)
Q Consensus 65 ~~~~Rp~~~~ 74 (76)
++.|||||.|
T Consensus 59 krsRrPIYrP 68 (94)
T PF05393_consen 59 KRSRRPIYRP 68 (94)
T ss_pred hhccCCcccc
Confidence 4456777754
No 18
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=30.86 E-value=28 Score=19.09 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=18.0
Q ss_pred HHHHHHHHhh-hhhhhhhheeeeeCc
Q 035011 36 CLLLTILGYV-PGIIYALYAIVFVDR 60 (76)
Q Consensus 36 n~lLtllg~i-Pg~ihA~yii~~~~~ 60 (76)
+++-.+.||+ ||+.-|+..++.+++
T Consensus 8 sI~VPlVGlvfPai~Ma~lf~yIe~~ 33 (36)
T CHL00186 8 SILVPLVGLVFPAIAMASLFLYIQKD 33 (36)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHhhhc
Confidence 4556777875 999998887765544
No 19
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=28.17 E-value=23 Score=18.77 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=15.7
Q ss_pred HHHHHHhh-hhhhhhhheeeeeCc
Q 035011 38 LLTILGYV-PGIIYALYAIVFVDR 60 (76)
Q Consensus 38 lLtllg~i-Pg~ihA~yii~~~~~ 60 (76)
+-.+.||+ ||+.-|+..++.+++
T Consensus 7 ~VPlVglvfPai~Ma~lf~yIe~~ 30 (31)
T TIGR03052 7 FVPLVGLVFPAVFMALLFRYIEAD 30 (31)
T ss_pred ehhHHHHHHHHHHHHHHHHheecc
Confidence 34566764 999888887765554
No 20
>COG4897 CsbA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.12 E-value=42 Score=21.26 Aligned_cols=46 Identities=26% Similarity=0.331 Sum_probs=31.3
Q ss_pred HHHHHhhcchheeehhhcCCChhHHHHHHHHHHH----hhhhhhhhhheee
Q 035011 10 EILIAILLPPLGVCLKHGCCTVEFCICLLLTILG----YVPGIIYALYAIV 56 (76)
Q Consensus 10 ~~ilai~lPPlaV~l~~g~~~~~~~In~lLtllg----~iPg~ihA~yii~ 56 (76)
.++.|.|+|=+-|.+-.. .+.+=++.++||... ..-|.-|..|++.
T Consensus 3 ~~~sAlfFPc~LVvLF~r-iT~n~yVa~vLt~vLi~AS~~kgYt~~~wii~ 52 (78)
T COG4897 3 QIISALFFPCLLVVLFAR-ITYNRYVALVLTVVLIAASAKKGYTSSFWIIT 52 (78)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccceeeeee
Confidence 457889999988887655 355557777776543 4456667777664
No 21
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=25.91 E-value=1.2e+02 Score=19.27 Aligned_cols=9 Identities=44% Similarity=0.855 Sum_probs=5.6
Q ss_pred hhhhhhhee
Q 035011 47 GIIYALYAI 55 (76)
Q Consensus 47 g~ihA~yii 55 (76)
-+++|+|..
T Consensus 76 Vily~IyYF 84 (101)
T PF06024_consen 76 VILYAIYYF 84 (101)
T ss_pred HHHhhheEE
Confidence 356777664
No 22
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=25.07 E-value=28 Score=21.49 Aligned_cols=31 Identities=16% Similarity=0.014 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhheeeeeCc
Q 035011 30 TVEFCICLLLTILGYVPGIIYALYAIVFVDR 60 (76)
Q Consensus 30 ~~~~~In~lLtllg~iPg~ihA~yii~~~~~ 60 (76)
...++.+++.|+|++.|=-+-|++.-.+.++
T Consensus 16 ~~yl~~sI~s~l~Cc~PlGi~Ai~~s~kv~~ 46 (82)
T PF04505_consen 16 PDYLVLSIFSTLCCCWPLGIVAIVYSSKVRS 46 (82)
T ss_pred CCceeHHHHHHHHHHhhHHHHHheechhhHH
Confidence 3466788888888766755555555444433
No 23
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=23.86 E-value=32 Score=22.38 Aligned_cols=34 Identities=9% Similarity=0.397 Sum_probs=24.0
Q ss_pred HHHHHHhhcchheeehhhcCCChhHHHHHHHHHHHhh
Q 035011 9 CEILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYV 45 (76)
Q Consensus 9 ~~~ilai~lPPlaV~l~~g~~~~~~~In~lLtllg~i 45 (76)
..-+++.+++=.|+++|.+.|+ |+.+++++..|.
T Consensus 34 y~~~L~~~~~m~gl~mr~K~~a---W~al~~s~~S~a 67 (103)
T PF03669_consen 34 YMSFLGMIFSMAGLMMRNKWCA---WAALFFSCQSFA 67 (103)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHH
Confidence 3456788888899999877554 777766666553
No 24
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.24 E-value=58 Score=21.27 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=26.2
Q ss_pred eeehhhcCCChhHHHHHHHHHHHhhhhhhhhhheeeee
Q 035011 21 GVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFV 58 (76)
Q Consensus 21 aV~l~~g~~~~~~~In~lLtllg~iPg~ihA~yii~~~ 58 (76)
+.++=+. ++.+.+..+.+.++|-.-|...|++.+.++
T Consensus 63 G~WLD~~-~~t~~~~tl~~lllGv~~G~~n~w~wi~re 99 (100)
T TIGR02230 63 GIWLDRH-YPSPFSWTLTMLIVGVVIGCLNAWHWVSRE 99 (100)
T ss_pred HHHHHhh-cCCCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444444 455667888899999999998888776543
No 25
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.55 E-value=53 Score=21.37 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=24.0
Q ss_pred HHHH-HHHHhhcchheeehhhcCCChhHHHHHHHHHHHhhhhhhhhhheeeeeCc
Q 035011 7 ICCE-ILIAILLPPLGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIVFVDR 60 (76)
Q Consensus 7 ~~~~-~ilai~lPPlaV~l~~g~~~~~~~In~lLtllg~iPg~ihA~yii~~~~~ 60 (76)
..++ .+++..+|-++.++--. .+..+.-+-...+++-+=|.+-+++++...++
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~-l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~ 119 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAV-LGSYLGGSELWAILGGLLGLALGFLILRLFDR 119 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3443 44455555555444322 34333434444444445555555555443333
No 26
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=21.38 E-value=1.1e+02 Score=19.73 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=23.4
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhheeeeeCcc
Q 035011 30 TVEFCICLLLTILGYVPGIIYALYAIVFVDRD 61 (76)
Q Consensus 30 ~~~~~In~lLtllg~iPg~ihA~yii~~~~~~ 61 (76)
+.+.|++.+..+..|+.++.-+.|. .++++.
T Consensus 39 g~~~~~a~~~gl~lw~v~h~~l~~m-AK~DP~ 69 (94)
T PRK13823 39 VAQTWRAALFGIALWFGALFALRLM-AKADPK 69 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcChH
Confidence 4466888888888899988888887 455553
No 27
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.95 E-value=52 Score=21.75 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhheee
Q 035011 30 TVEFCICLLLTILGYVPGIIYALYAIV 56 (76)
Q Consensus 30 ~~~~~In~lLtllg~iPg~ihA~yii~ 56 (76)
+.+.+.-+++.++.++||.-|-....+
T Consensus 73 ~~~~~~llilG~L~fIPG~Y~~~i~y~ 99 (115)
T PF05915_consen 73 RDRGWALLILGILCFIPGFYHTRIAYY 99 (115)
T ss_pred CcccchHHHHHHHHHhccHHHHHHHHH
Confidence 556788888999999999988766544
No 28
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=20.87 E-value=33 Score=23.14 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=20.7
Q ss_pred hhhhheeeeeCcchhhhhcCccccC
Q 035011 49 IYALYAIVFVDRDEYFDEYRRPLYA 73 (76)
Q Consensus 49 ihA~yii~~~~~~~~~~~~~Rp~~~ 73 (76)
=+|+|.+.....+++-.+.|+|+..
T Consensus 70 ~FALYevh~nGe~RKL~d~E~PL~~ 94 (112)
T cd01782 70 TYSLYEVHENGEERRLLDDEKPLVV 94 (112)
T ss_pred ceEEEEEecCCceEEcCCcCCCeEE
Confidence 7899999877777888888999864
Done!