Query 035011
Match_columns 76
No_of_seqs 103 out of 682
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:50:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_I Photosystem 1 reaction 38.4 15 0.00053 19.5 1.5 34 27-60 3-37 (38)
2 1v54_G Cytochrome C oxidase po 17.2 44 0.0015 20.4 0.9 25 30-56 12-36 (85)
3 2y69_G Cytochrome C oxidase po 11.8 75 0.0026 19.8 0.9 25 30-56 24-48 (97)
4 1b75_A Protein (50S ribosomal 11.1 27 0.00092 20.9 -1.3 9 43-51 24-32 (94)
5 2ki9_A Cannabinoid receptor 2; 9.1 1.3E+02 0.0043 14.0 1.0 23 31-53 6-28 (33)
6 1qf8_A Casein kinase II; casei 8.9 46 0.0016 22.8 -1.0 23 45-67 79-101 (182)
7 2q0o_C Probable transcriptiona 8.6 1.3E+02 0.0046 19.1 1.2 17 32-48 85-101 (107)
8 2hjd_A Quorum-sensing antiacti 8.5 1.2E+02 0.0041 19.2 0.9 17 32-48 83-99 (102)
9 1rfy_A TRAM protein;, transcri 8.4 1.2E+02 0.0041 19.2 0.9 17 32-48 83-99 (102)
10 3r8s_4 50S ribosomal protein L 8.2 77 0.0026 16.7 -0.0 15 52-66 23-37 (38)
No 1
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=38.43 E-value=15 Score=19.54 Aligned_cols=34 Identities=12% Similarity=0.408 Sum_probs=24.1
Q ss_pred cCCChhHHHHHHHHHHHhh-hhhhhhhheeeeeCc
Q 035011 27 GCCTVEFCICLLLTILGYV-PGIIYALYAIVFVDR 60 (76)
Q Consensus 27 g~~~~~~~In~lLtllg~i-Pg~ihA~yii~~~~~ 60 (76)
|......+=+++--+.||+ |++.-|+..++.+++
T Consensus 3 g~~aa~~LPsI~VPlVglvfPai~Mallf~yIe~~ 37 (38)
T 1jb0_I 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLYIEGE 37 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHHHHCB
T ss_pred chhhhhhCChhhHhHHHHHHHHHHHHHHHHhhccc
Confidence 3345556667777888986 999998887765443
No 2
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=17.16 E-value=44 Score=20.36 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=18.0
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhheee
Q 035011 30 TVEFCICLLLTILGYVPGIIYALYAIV 56 (76)
Q Consensus 30 ~~~~~In~lLtllg~iPg~ihA~yii~ 56 (76)
+.+.|-++ |+++-+|+++-+.+-.+
T Consensus 12 ~~~~Wkki--s~~va~P~v~l~~~n~y 36 (85)
T 1v54_G 12 GARTWRFL--TFGLALPSVALCTLNSW 36 (85)
T ss_dssp CHHHHHHH--HHHTHHHHHHHHHHHHT
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 45666664 66788999988776654
No 3
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=11.83 E-value=75 Score=19.78 Aligned_cols=25 Identities=12% Similarity=-0.049 Sum_probs=18.3
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhheee
Q 035011 30 TVEFCICLLLTILGYVPGIIYALYAIV 56 (76)
Q Consensus 30 ~~~~~In~lLtllg~iPg~ihA~yii~ 56 (76)
+.+.|-++ |+++-+|+++-+.+-.+
T Consensus 24 ~~~~Wkki--S~~va~P~v~l~~~n~y 48 (97)
T 2y69_G 24 GARTWRFL--TFGLALPSVALCTLNSW 48 (97)
T ss_dssp CHHHHHHH--HHHTHHHHHHHHHHHHT
T ss_pred hhhhHHHH--HHHHHHHHHHHHHHHHH
Confidence 45677765 66788999998876654
No 4
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=11.13 E-value=27 Score=20.94 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=6.7
Q ss_pred Hhhhhhhhh
Q 035011 43 GYVPGIIYA 51 (76)
Q Consensus 43 g~iPg~ihA 51 (76)
|.+||++|.
T Consensus 24 G~vPaVvYG 32 (94)
T 1b75_A 24 NKFPAIIYG 32 (94)
T ss_dssp TBCCEEEEC
T ss_pred CCceEEEEC
Confidence 578888874
No 5
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=9.10 E-value=1.3e+02 Score=13.99 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhh
Q 035011 31 VEFCICLLLTILGYVPGIIYALY 53 (76)
Q Consensus 31 ~~~~In~lLtllg~iPg~ihA~y 53 (76)
+-+.+-+...++.|.|-.+..++
T Consensus 6 k~l~~vv~~F~icW~P~~i~~~~ 28 (33)
T 2ki9_A 6 KTLGLVLAVLLICWFPVLALMAH 28 (33)
T ss_dssp SHHHHHHHHHTTTSSHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhHHHHHHHH
Confidence 44455556677789996655443
No 6
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=8.85 E-value=46 Score=22.81 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=15.1
Q ss_pred hhhhhhhhheeeeeCcchhhhhc
Q 035011 45 VPGIIYALYAIVFVDRDEYFDEY 67 (76)
Q Consensus 45 iPg~ihA~yii~~~~~~~~~~~~ 67 (76)
+=|+|||=|++..+.=++..+.+
T Consensus 79 LYGLIHaRyIlT~~Gl~~M~eKy 101 (182)
T 1qf8_A 79 LYGLIHARYILTNRGIAQMLEKY 101 (182)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HhchhhhhhcccHHHHHHHHHhh
Confidence 56889999998765444433333
No 7
>2q0o_C Probable transcriptional repressor TRAM; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=8.61 E-value=1.3e+02 Score=19.13 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHhhhhh
Q 035011 32 EFCICLLLTILGYVPGI 48 (76)
Q Consensus 32 ~~~In~lLtllg~iPg~ 48 (76)
+.-+|-++-.|||+|-+
T Consensus 85 q~~lstLid~LGyvPkV 101 (107)
T 2q0o_C 85 QEELSDILDALGFVPDV 101 (107)
T ss_dssp HHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 56789999999999954
No 8
>2hjd_A Quorum-sensing antiactivator; helix coiled coil, signaling protein; 2.10A {Agrobacterium tumefaciens}
Probab=8.46 E-value=1.2e+02 Score=19.22 Aligned_cols=17 Identities=24% Similarity=0.620 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHhhhhh
Q 035011 32 EFCICLLLTILGYVPGI 48 (76)
Q Consensus 32 ~~~In~lLtllg~iPg~ 48 (76)
+.-+|-++-+|||+|-+
T Consensus 83 q~~lstli~~LGyvP~v 99 (102)
T 2hjd_A 83 MSAVNTLVGLLGFIPKV 99 (102)
T ss_dssp HHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 45688999999999954
No 9
>1rfy_A TRAM protein;, transcriptional repressor TRAM; inter- and intra-molcular two-helix coiled coil, homodimer; 1.60A {Agrobacterium tumefaciens} SCOP: a.2.13.1 PDB: 1us6_A 1upg_A
Probab=8.39 E-value=1.2e+02 Score=19.20 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhhhhh
Q 035011 32 EFCICLLLTILGYVPGI 48 (76)
Q Consensus 32 ~~~In~lLtllg~iPg~ 48 (76)
+.-+|-++-+|||+|-+
T Consensus 83 q~~lstli~~LGyvP~v 99 (102)
T 1rfy_A 83 MSALNTLISILGFIPKV 99 (102)
T ss_dssp HHHHHHHHHHHTSCCC-
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 45688999999999954
No 10
>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
Probab=8.21 E-value=77 Score=16.69 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=9.0
Q ss_pred hheeeeeCcchhhhh
Q 035011 52 LYAIVFVDRDEYFDE 66 (76)
Q Consensus 52 ~yii~~~~~~~~~~~ 66 (76)
+|+|++.++.-++++
T Consensus 23 v~Vick~nPrhKqRQ 37 (38)
T 3r8s_4 23 IRVICSAEPKHKQRQ 37 (38)
T ss_dssp EEEEETTCGGGCEEC
T ss_pred EEEEeCCCCchhhcC
Confidence 567776666555544
Done!