Query 035011
Match_columns 76
No_of_seqs 103 out of 682
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 13:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035011.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035011hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u3em2 d.285.1.1 (M:106-174) 20.0 9.8 0.00071 21.3 -0.1 12 65-76 12-23 (69)
2 d1dfup_ b.53.1.1 (P:) Ribosoma 16.2 6.9 0.0005 22.2 -1.5 8 43-50 24-31 (94)
3 d1oedc_ f.36.1.1 (C:) Acetylch 10.7 1.4E+02 0.01 18.0 3.6 9 11-19 19-27 (260)
4 d1rfya_ a.2.13.1 (A:) Transcri 10.5 43 0.0031 19.3 0.9 13 34-46 76-88 (89)
5 d1qf8a_ g.41.4.1 (A:) Casein k 9.2 20 0.0015 22.7 -1.0 26 45-70 73-98 (173)
6 d2qam41 g.42.1.1 (4:1-38) Ribo 9.0 32 0.0023 17.0 -0.1 15 52-66 23-37 (38)
7 d1lnsa1 a.40.2.1 (A:1-145) X-P 7.3 68 0.0049 19.6 1.0 21 29-49 69-89 (145)
8 d1w6ka2 a.102.4.2 (A:100-378) 6.5 29 0.0021 23.4 -1.3 18 43-60 4-21 (279)
9 d2e74g1 f.23.26.1 (G:9-35) Pet 6.3 1E+02 0.0074 13.8 1.1 14 45-58 10-23 (27)
10 d1v54j_ f.23.4.1 (J:) Mitochon 6.2 78 0.0056 16.7 0.7 34 20-56 18-51 (58)
No 1
>d1u3em2 d.285.1.1 (M:106-174) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
Probab=20.04 E-value=9.8 Score=21.27 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=9.5
Q ss_pred hhcCccccCCCC
Q 035011 65 DEYRRPLYAPGP 76 (76)
Q Consensus 65 ~~~~Rp~~~~~~ 76 (76)
.++|||||+.+|
T Consensus 12 i~nekpIyvis~ 23 (69)
T d1u3em2 12 IKNQKPIIVISP 23 (69)
T ss_dssp HHTCCCEEEECT
T ss_pred hhccCCEEEEcC
Confidence 567899998775
No 2
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=16.16 E-value=6.9 Score=22.25 Aligned_cols=8 Identities=50% Similarity=0.928 Sum_probs=6.7
Q ss_pred Hhhhhhhh
Q 035011 43 GYVPGIIY 50 (76)
Q Consensus 43 g~iPg~ih 50 (76)
|++||++|
T Consensus 24 G~vPaViY 31 (94)
T d1dfup_ 24 NKFPAIIY 31 (94)
T ss_dssp TEEEEEEE
T ss_pred CCccEEEE
Confidence 68899887
No 3
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=10.65 E-value=1.4e+02 Score=17.97 Aligned_cols=9 Identities=33% Similarity=0.563 Sum_probs=4.8
Q ss_pred HHHHhhcch
Q 035011 11 ILIAILLPP 19 (76)
Q Consensus 11 ~ilai~lPP 19 (76)
-++++++||
T Consensus 19 ~~~~f~lp~ 27 (260)
T d1oedc_ 19 ASLAFYLPA 27 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHeeeCC
Confidence 344555665
No 4
>d1rfya_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}
Probab=10.46 E-value=43 Score=19.27 Aligned_cols=13 Identities=38% Similarity=0.996 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhh
Q 035011 34 CICLLLTILGYVP 46 (76)
Q Consensus 34 ~In~lLtllg~iP 46 (76)
-+|-++.++|++|
T Consensus 76 Av~tLi~iLG~iP 88 (89)
T d1rfya_ 76 ALNTLISILGFIP 88 (89)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHhccCC
Confidence 3678888899887
No 5
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.16 E-value=20 Score=22.71 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=17.1
Q ss_pred hhhhhhhhheeeeeCcchhhhhcCcc
Q 035011 45 VPGIIYALYAIVFVDRDEYFDEYRRP 70 (76)
Q Consensus 45 iPg~ihA~yii~~~~~~~~~~~~~Rp 70 (76)
+=|+|||=|++..+.=++..+.+++.
T Consensus 73 LYGLIHaRyI~T~~Gl~~m~eKy~~g 98 (173)
T d1qf8a_ 73 LYGLIHARYILTNRGIAQMLEKYQQG 98 (173)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHTT
T ss_pred HHHHhhhheeecHhHHHHHHHHHhCC
Confidence 55889999999766554444444443
No 6
>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]}
Probab=9.03 E-value=32 Score=16.98 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=9.4
Q ss_pred hheeeeeCcchhhhh
Q 035011 52 LYAIVFVDRDEYFDE 66 (76)
Q Consensus 52 ~yii~~~~~~~~~~~ 66 (76)
+|+|+..++.-++++
T Consensus 23 v~ViCk~nPrHKQRQ 37 (38)
T d2qam41 23 IRVICSAEPKHKQRQ 37 (38)
T ss_dssp CCCCBSSCGGGCCCC
T ss_pred EEEEeCCCCcccccC
Confidence 577777666555554
No 7
>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=7.31 E-value=68 Score=19.61 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.2
Q ss_pred CChhHHHHHHHHHHHhhhhhh
Q 035011 29 CTVEFCICLLLTILGYVPGII 49 (76)
Q Consensus 29 ~~~~~~In~lLtllg~iPg~i 49 (76)
.+.+.+-|+.|=++||.|++=
T Consensus 69 lt~~vFY~VALQLLgF~~~~D 89 (145)
T d1lnsa1 69 LDWEIFWNIALQLLDFVPNFD 89 (145)
T ss_dssp CCHHHHHHHHHHHTTCCBTTT
T ss_pred CCHHHHHHHHHHHcCCccccc
Confidence 688999999999999987753
No 8
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.54 E-value=29 Score=23.37 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=13.4
Q ss_pred HhhhhhhhhhheeeeeCc
Q 035011 43 GYVPGIIYALYAIVFVDR 60 (76)
Q Consensus 43 g~iPg~ihA~yii~~~~~ 60 (76)
+.+||.|-|+|+.-..-+
T Consensus 4 f~~p~~Vial~i~g~~~~ 21 (279)
T d1w6ka2 4 FLLPGLLITCHVARIPLP 21 (279)
T ss_dssp SHHHHHHHHHHHHTCCCC
T ss_pred hhhhHHHHHHhhcCCCCC
Confidence 568999999998754433
No 9
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.25 E-value=1e+02 Score=13.80 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=8.9
Q ss_pred hhhhhhhhheeeee
Q 035011 45 VPGIIYALYAIVFV 58 (76)
Q Consensus 45 iPg~ihA~yii~~~ 58 (76)
+-|..+|-|-.+++
T Consensus 10 l~glf~aayqqykr 23 (27)
T d2e74g1 10 LGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcC
Confidence 55777887765443
No 10
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.25 E-value=78 Score=16.70 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=16.6
Q ss_pred heeehhhcCCChhHHHHHHHHHHHhhhhhhhhhheee
Q 035011 20 LGVCLKHGCCTVEFCICLLLTILGYVPGIIYALYAIV 56 (76)
Q Consensus 20 laV~l~~g~~~~~~~In~lLtllg~iPg~ihA~yii~ 56 (76)
+.|++++| ..|-++=- +|.-.=+-|..+++|.++
T Consensus 18 ~PVhLKGG--~~D~~LYr-~Tm~L~~~G~~~s~~~l~ 51 (58)
T d1v54j_ 18 LPVHLKGG--ATDNILYR-VTMTLCLGGTLYSLYCLG 51 (58)
T ss_dssp CCTTTTTC--HHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ceEEecCC--cchHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 35788777 45544322 122222445566655543
Done!