BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035014
MSILETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSSIPTYK
QPASAVYKCLNPPNCN

High Scoring Gene Products

Symbol, full name Information P value
AT5G62840 protein from Arabidopsis thaliana 3.4e-29

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035014
        (76 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2170733 - symbol:AT5G62840 "AT5G62840" species...   324  3.4e-29   1


>TAIR|locus:2170733 [details] [associations]
            symbol:AT5G62840 "AT5G62840" species:3702 "Arabidopsis
            thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
            [GO:0008152 "metabolic process" evidence=ISS] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0009965 "leaf morphogenesis"
            evidence=RCA] [GO:0016556 "mRNA modification" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] Pfam:PF00300
            EMBL:CP002688 GenomeReviews:BA000015_GR InterPro:IPR013078
            EMBL:AB009053 EMBL:AY088319 IPI:IPI00534084 RefSeq:NP_201090.1
            UniGene:At.29029 ProteinModelPortal:Q9FM11 SMR:Q9FM11 STRING:Q9FM11
            PaxDb:Q9FM11 PRIDE:Q9FM11 EnsemblPlants:AT5G62840.1 GeneID:836405
            KEGG:ath:AT5G62840 TAIR:At5g62840 eggNOG:NOG256899
            HOGENOM:HOG000030654 InParanoid:Q9FM11 OMA:MSILETQ PhylomeDB:Q9FM11
            ProtClustDB:CLSN2687371 Genevestigator:Q9FM11 Uniprot:Q9FM11
        Length = 297

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 60/76 (78%), Positives = 67/76 (88%)

Query:     1 MSILETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSSIPTYK 60
             MSILETQYSEDT++IVSPDSDNLS+LQAG+ GLDLRRH EL F PGEVR +D +SIP YK
Sbjct:   222 MSILETQYSEDTIVIVSPDSDNLSVLQAGIQGLDLRRHSELYFGPGEVRLLDANSIPVYK 281

Query:    61 QPASAVYKCLNPPNCN 76
             QPASAVYKC  PPNC+
Sbjct:   282 QPASAVYKCKKPPNCD 297


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       76        76   0.00091  102 3  11 22  0.40    29
                                                     29  0.48    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  509 (54 KB)
  Total size of DFA:  93 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.16u 0.12s 8.28t   Elapsed:  00:00:01
  Total cpu time:  8.16u 0.12s 8.28t   Elapsed:  00:00:01
  Start:  Fri May 10 04:45:04 2013   End:  Fri May 10 04:45:05 2013

Back to top