BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035014
         (76 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2SXT6|LEPA_BURTA Elongation factor 4 OS=Burkholderia thailandensis (strain E264 /
           ATCC 700388 / DSM 13276 / CIP 106301) GN=lepA PE=3 SV=1
          Length = 597

 Score = 32.7 bits (73), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 5   ETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAP-GEVRFVDTSS----IPTY 59
           + QYS + V + +P S NL  L AG +G  +   +EL+ A  G+     T S    +P +
Sbjct: 229 DAQYSVEHVGVFTPKSRNLESLSAGQVGFIIAGIKELTAAKVGDTVTHATKSAPEPLPGF 288

Query: 60  KQPASAVYKCLNPPNCN 76
           K+    V+  L P   N
Sbjct: 289 KEVKPQVFAGLYPVEAN 305


>sp|Q9R6X3|PHYB_NOSS1 Cyanobacterial phytochrome B OS=Nostoc sp. (strain PCC 7120 / UTEX
           2576) GN=bphB PE=3 SV=1
          Length = 751

 Score = 32.7 bits (73), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 2   SILETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRE---LSFAPGEVRFVDTSSIP 57
           +I E  ++ D++  V PD++ L  + +GLI L + R ++   L F P  VR VD    P
Sbjct: 398 NIHEEIFATDSLATVYPDAEKLRDVASGLIALSISRSQKNYILWFRPEVVRTVDWGGNP 456


>sp|Q2VRL0|PLCZ1_CHICK 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase zeta-1
           OS=Gallus gallus GN=PLCZ1 PE=2 SV=1
          Length = 637

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 34  DLRRHRELSFAPGEVRFVDTSSIPTYKQPASAVYKCLNPPNCN 76
           ++R+ R+LSF  G +R++ +     +K+    VY+ +N P C+
Sbjct: 124 EVRKRRQLSFE-GFIRYMSSEDCTIFKKEHRTVYQDMNHPLCD 165


>sp|A4JCQ9|LEPA_BURVG Elongation factor 4 OS=Burkholderia vietnamiensis (strain G4 / LMG
           22486) GN=lepA PE=3 SV=1
          Length = 597

 Score = 29.6 bits (65), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 7   QYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAP-----GEVRFVDTSSIPTYKQ 61
           QY  + V + +P S NL  L AG +G  +   +EL+ A        V    T  +P +K+
Sbjct: 231 QYPVEHVGVFTPKSRNLESLSAGQVGFIIAGIKELTAAKVGDTVTHVAKPATEPLPGFKE 290

Query: 62  PASAVYKCLNPPNCN 76
               V+  L P   N
Sbjct: 291 VKPQVFAGLYPVEAN 305


>sp|Q0BH06|LEPA_BURCM Elongation factor 4 OS=Burkholderia ambifaria (strain ATCC BAA-244
           / AMMD) GN=lepA PE=3 SV=1
          Length = 597

 Score = 28.9 bits (63), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 7   QYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAP-----GEVRFVDTSSIPTYKQ 61
           QY  + V + +P S NL  L AG +G  +   +EL+ A        V    +  +P +K+
Sbjct: 231 QYPVEHVGVFTPKSRNLESLSAGQVGFIIAGIKELTAAKVGDTVTHVAKAASEPLPGFKE 290

Query: 62  PASAVYKCLNPPNCN 76
               V+  L P   N
Sbjct: 291 VKPQVFAGLYPVEAN 305


>sp|B1YVM2|LEPA_BURA4 Elongation factor 4 OS=Burkholderia ambifaria (strain MC40-6)
           GN=lepA PE=3 SV=1
          Length = 597

 Score = 28.9 bits (63), Expect = 8.8,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 7   QYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAP-----GEVRFVDTSSIPTYKQ 61
           QY  + V + +P S NL  L AG +G  +   +EL+ A        V    +  +P +K+
Sbjct: 231 QYPVEHVGVFTPKSRNLESLSAGQVGFIIAGIKELTAAKVGDTVTHVAKAASEPLPGFKE 290

Query: 62  PASAVYKCLNPPNCN 76
               V+  L P   N
Sbjct: 291 VKPQVFAGLYPVEAN 305


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,162,393
Number of Sequences: 539616
Number of extensions: 945648
Number of successful extensions: 2024
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2022
Number of HSP's gapped (non-prelim): 7
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)