Query 035014
Match_columns 76
No_of_seqs 30 out of 32
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 08:29:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15004 alpha-ribazole phosph 98.0 2.8E-06 6E-11 58.1 2.3 51 3-54 134-184 (199)
2 TIGR03162 ribazole_cobC alpha- 97.7 1.5E-05 3.2E-10 52.4 1.5 47 3-50 130-176 (177)
3 PRK03482 phosphoglycerate muta 97.5 7.8E-05 1.7E-09 51.4 2.6 51 4-55 136-186 (215)
4 PRK14116 gpmA phosphoglyceromu 97.4 0.00016 3.5E-09 51.3 3.3 47 8-55 172-218 (228)
5 TIGR03848 MSMEG_4193 probable 97.3 0.0003 6.4E-09 48.1 3.9 47 8-55 142-188 (204)
6 PRK14120 gpmA phosphoglyceromu 97.2 0.00025 5.5E-09 51.8 2.7 51 4-55 169-219 (249)
7 TIGR01258 pgm_1 phosphoglycera 97.2 0.00036 7.8E-09 50.7 3.1 48 7-55 170-217 (245)
8 PRK14117 gpmA phosphoglyceromu 97.1 0.00057 1.2E-08 48.7 3.3 47 8-55 172-218 (230)
9 PRK13462 acid phosphatase; Pro 97.1 0.0004 8.7E-09 48.7 2.4 49 5-54 134-182 (203)
10 cd07067 HP_PGM_like Histidine 97.0 0.00042 9.1E-09 44.2 2.0 51 4-55 93-143 (153)
11 COG0406 phoE Broad specificity 97.0 0.00047 1E-08 46.7 2.3 52 3-55 138-189 (208)
12 PRK14115 gpmA phosphoglyceromu 97.0 0.00059 1.3E-08 49.6 2.9 47 8-55 171-217 (247)
13 PRK14118 gpmA phosphoglyceromu 97.0 0.00072 1.6E-08 48.0 3.3 47 8-55 171-217 (227)
14 PTZ00123 phosphoglycerate muta 97.0 0.00061 1.3E-08 48.7 2.8 47 8-55 159-205 (236)
15 PRK01295 phosphoglyceromutase; 96.9 0.0011 2.4E-08 46.4 3.2 50 8-58 148-197 (206)
16 PRK07238 bifunctional RNase H/ 96.8 0.00074 1.6E-08 50.6 2.0 51 3-54 305-355 (372)
17 PRK14119 gpmA phosphoglyceromu 96.8 0.0014 3E-08 46.3 3.2 46 9-55 173-218 (228)
18 PRK01112 phosphoglyceromutase; 96.5 0.0023 5E-08 45.9 2.8 46 9-55 172-217 (228)
19 PRK13463 phosphatase PhoE; Pro 96.4 0.0028 6.1E-08 43.8 2.8 48 6-54 139-187 (203)
20 PTZ00122 phosphoglycerate muta 95.4 0.021 4.5E-07 43.1 3.8 44 10-54 232-275 (299)
21 cd07040 HP Histidine phosphata 95.0 0.035 7.7E-07 34.5 3.4 47 9-56 98-144 (153)
22 PTZ00322 6-phosphofructo-2-kin 84.6 0.85 1.8E-05 37.6 2.6 44 10-54 577-625 (664)
23 TIGR00249 sixA phosphohistidin 82.9 3.4 7.4E-05 27.8 4.6 41 9-54 99-139 (152)
24 KOG3734 Predicted phosphoglyce 77.6 2.3 5E-05 33.1 2.7 30 6-36 190-219 (272)
25 COG0588 GpmA Phosphoglycerate 71.8 4.7 0.0001 31.2 3.1 41 9-50 173-213 (230)
26 COG0488 Uup ATPase components 63.6 3.3 7.1E-05 34.2 0.9 26 7-33 198-223 (530)
27 COG3521 Predicted component of 61.9 4.7 0.0001 29.3 1.3 25 30-54 81-105 (159)
28 PF14417 MEDS: MEDS: MEthanoge 60.7 22 0.00048 24.5 4.4 42 9-54 46-89 (191)
29 KOG0235 Phosphoglycerate mutas 60.5 13 0.00028 27.9 3.4 48 5-53 151-198 (214)
30 PRK10848 phosphohistidine phos 59.7 27 0.00059 23.7 4.7 40 10-54 100-139 (159)
31 PF01936 NYN: NYN domain; Int 55.4 11 0.00023 23.6 2.0 19 11-29 97-115 (146)
32 cd06167 LabA_like LabA_like pr 53.9 15 0.00034 23.4 2.6 20 10-29 100-119 (149)
33 COG4181 Predicted ABC-type tra 52.2 19 0.0004 28.0 3.2 36 9-51 35-70 (228)
34 PF02739 5_3_exonuc_N: 5'-3' e 52.0 6.7 0.00015 27.4 0.7 18 10-27 125-142 (169)
35 PF11496 HDA2-3: Class II hist 51.1 12 0.00025 28.7 2.0 34 6-39 113-146 (297)
36 PF12040 DUF3526: Domain of un 50.1 3 6.5E-05 28.5 -1.2 26 15-41 85-110 (156)
37 TIGR00288 conserved hypothetic 44.7 11 0.00023 27.2 0.8 27 3-29 97-125 (160)
38 cd07557 trimeric_dUTPase Trime 43.4 13 0.00028 22.4 0.9 25 31-55 1-28 (92)
39 cd05013 SIS_RpiR RpiR-like pro 40.2 44 0.00095 20.1 3.0 21 9-29 60-80 (139)
40 PRK15416 lipopolysaccharide co 40.0 30 0.00065 25.5 2.6 27 7-34 148-174 (201)
41 PF13580 SIS_2: SIS domain; PD 37.5 44 0.00095 21.9 2.9 25 8-32 102-126 (138)
42 PF04101 Glyco_tran_28_C: Glyc 37.3 34 0.00074 22.2 2.3 21 14-35 75-95 (167)
43 cd05008 SIS_GlmS_GlmD_1 SIS (S 36.6 51 0.0011 20.3 2.9 22 9-30 46-67 (126)
44 PF00005 ABC_tran: ABC transpo 35.2 76 0.0016 19.5 3.5 29 8-36 9-37 (137)
45 cd05017 SIS_PGI_PMI_1 The memb 35.0 55 0.0012 20.6 2.9 23 9-31 43-65 (119)
46 PHA02567 rnh RnaseH; Provision 34.7 23 0.0005 28.0 1.4 19 9-27 145-163 (304)
47 TIGR03352 VI_chp_3 type VI sec 33.5 24 0.00053 24.3 1.2 31 28-58 75-105 (146)
48 cd00008 53EXOc 5'-3' exonuclea 32.9 33 0.00072 24.9 1.9 18 9-26 123-140 (240)
49 COG1432 Uncharacterized conser 32.2 36 0.00077 23.9 1.9 27 3-29 102-130 (181)
50 PF08883 DOPA_dioxygen: Dopa 4 32.1 1.5 3.2E-05 29.7 -4.9 32 23-54 71-102 (104)
51 PRK13956 dut deoxyuridine 5'-t 31.6 35 0.00076 23.9 1.7 27 29-55 25-51 (147)
52 TIGR01011 rpsB_bact ribosomal 30.8 1.3E+02 0.0028 22.1 4.7 37 10-58 156-192 (225)
53 cd03248 ABCC_TAP TAP, the Tran 30.6 78 0.0017 21.6 3.3 27 8-34 38-64 (226)
54 PF04717 Phage_base_V: Phage-r 30.4 34 0.00073 20.5 1.3 12 10-21 47-58 (79)
55 PRK09482 flap endonuclease-lik 29.5 29 0.00063 26.3 1.1 19 9-27 122-140 (256)
56 COG4138 BtuD ABC-type cobalami 29.5 68 0.0015 25.2 3.2 25 9-33 24-48 (248)
57 PF12077 DUF3556: Transmembran 29.4 34 0.00074 29.7 1.6 23 39-61 510-532 (574)
58 PRK14262 phosphate ABC transpo 28.9 85 0.0018 21.8 3.3 26 8-33 27-52 (250)
59 COG4161 ArtP ABC-type arginine 28.6 59 0.0013 25.4 2.7 49 9-60 27-75 (242)
60 PRK10584 putative ABC transpor 28.6 92 0.002 21.3 3.4 27 8-34 34-60 (228)
61 cd05014 SIS_Kpsf KpsF-like pro 28.6 85 0.0018 19.3 3.0 23 9-31 47-69 (128)
62 PRK11607 potG putrescine trans 28.6 1.8E+02 0.004 22.6 5.4 44 8-58 43-88 (377)
63 PRK13540 cytochrome c biogenes 28.2 96 0.0021 20.9 3.4 27 8-34 25-51 (200)
64 CHL00067 rps2 ribosomal protei 28.2 1.5E+02 0.0032 21.9 4.6 36 11-58 163-198 (230)
65 cd03216 ABC_Carb_Monos_I This 28.0 1.1E+02 0.0023 20.3 3.5 36 8-50 24-59 (163)
66 PF11899 DUF3419: Protein of u 27.8 95 0.0021 24.7 3.8 33 9-55 35-67 (380)
67 TIGR02673 FtsE cell division A 27.6 1E+02 0.0022 20.8 3.4 27 8-34 26-52 (214)
68 PF06713 bPH_4: Bacterial PH d 27.5 1.1E+02 0.0023 18.6 3.2 26 2-28 44-69 (74)
69 PRK05299 rpsB 30S ribosomal pr 26.8 1.6E+02 0.0035 22.2 4.7 37 10-58 158-194 (258)
70 cd01635 Glycosyltransferase_GT 26.8 74 0.0016 19.7 2.4 29 11-39 182-212 (229)
71 PRK13543 cytochrome c biogenes 26.7 1E+02 0.0022 21.1 3.3 27 8-34 35-61 (214)
72 TIGR03740 galliderm_ABC gallid 26.2 1.1E+02 0.0023 20.9 3.4 27 8-34 24-50 (223)
73 cd00267 ABC_ATPase ABC (ATP-bi 26.2 1.2E+02 0.0025 19.6 3.4 27 8-34 23-49 (157)
74 PF08616 SPA: Stabilization of 26.2 36 0.00078 22.5 1.0 69 4-72 19-89 (113)
75 TIGR03608 L_ocin_972_ABC putat 26.1 1.2E+02 0.0025 20.3 3.5 27 8-34 22-48 (206)
76 cd08562 GDPD_EcUgpQ_like Glyce 25.3 43 0.00094 22.8 1.3 16 6-21 34-49 (229)
77 PRK14976 5'-3' exonuclease; Pr 25.2 37 0.00081 25.6 1.0 19 9-27 128-146 (281)
78 cd03228 ABCC_MRP_Like The MRP 25.2 1.2E+02 0.0026 20.0 3.4 27 8-34 26-52 (171)
79 PTZ00143 deoxyuridine 5'-triph 25.1 51 0.0011 23.3 1.7 27 29-55 25-51 (155)
80 cd03269 ABC_putative_ATPase Th 25.0 1.2E+02 0.0026 20.4 3.4 27 8-34 24-50 (210)
81 cd03289 ABCC_CFTR2 The CFTR su 25.0 96 0.0021 22.9 3.1 41 8-56 28-70 (275)
82 TIGR03410 urea_trans_UrtE urea 24.8 1.2E+02 0.0026 20.7 3.4 27 8-34 24-50 (230)
83 PRK14270 phosphate ABC transpo 24.8 1.1E+02 0.0023 21.4 3.2 27 8-34 28-54 (251)
84 PRK09454 ugpQ cytoplasmic glyc 24.7 44 0.00096 23.8 1.3 16 6-21 43-58 (249)
85 cd03258 ABC_MetN_methionine_tr 24.7 1.2E+02 0.0026 20.8 3.4 27 8-34 29-55 (233)
86 cd03247 ABCC_cytochrome_bd The 24.6 1.2E+02 0.0027 20.0 3.4 27 8-34 26-52 (178)
87 cd03230 ABC_DR_subfamily_A Thi 24.5 1.3E+02 0.0027 19.9 3.4 27 8-34 24-50 (173)
88 PF11181 YflT: Heat induced st 24.5 60 0.0013 20.6 1.8 24 6-29 22-45 (103)
89 smart00475 53EXOc 5'-3' exonuc 24.5 45 0.00097 24.9 1.4 18 10-27 123-140 (259)
90 PRK11614 livF leucine/isoleuci 24.3 1.2E+02 0.0025 20.9 3.3 27 8-34 29-55 (237)
91 cd03802 GT1_AviGT4_like This f 24.2 76 0.0016 21.5 2.3 30 8-37 241-273 (335)
92 PRK10619 histidine/lysine/argi 23.8 1.2E+02 0.0027 21.2 3.4 27 8-34 29-55 (257)
93 cd03300 ABC_PotA_N PotA is an 23.6 1.3E+02 0.0027 20.8 3.4 27 8-34 24-50 (232)
94 TIGR00968 3a0106s01 sulfate AB 23.5 1.3E+02 0.0027 21.0 3.4 36 8-50 24-59 (237)
95 cd06068 H2MP_like-1 Putative [ 23.5 2.2E+02 0.0048 18.8 4.4 56 3-58 22-80 (144)
96 TIGR02315 ABC_phnC phosphonate 23.2 1.3E+02 0.0028 20.6 3.4 27 8-34 26-52 (243)
97 KOG0062 ATPase component of AB 23.2 41 0.0009 29.2 1.0 18 11-28 246-263 (582)
98 TIGR02211 LolD_lipo_ex lipopro 23.1 1.4E+02 0.0029 20.2 3.4 27 8-34 29-55 (221)
99 cd03221 ABCF_EF-3 ABCF_EF-3 E 22.9 1.4E+02 0.0031 19.4 3.4 27 8-34 24-50 (144)
100 TIGR00576 dut deoxyuridine 5'- 22.8 58 0.0013 22.0 1.6 29 27-55 17-45 (141)
101 PF12790 T6SS-SciN: Type VI se 22.8 17 0.00038 24.2 -1.0 32 27-58 69-100 (142)
102 PRK14245 phosphate ABC transpo 22.5 1.2E+02 0.0027 21.1 3.2 26 8-33 27-52 (250)
103 TIGR00972 3a0107s01c2 phosphat 22.3 1.4E+02 0.0029 20.8 3.3 27 8-34 25-51 (247)
104 COG0396 sufC Cysteine desulfur 22.2 1.4E+02 0.0031 23.4 3.7 46 8-58 28-75 (251)
105 cd03256 ABC_PhnC_transporter A 22.2 1.4E+02 0.0031 20.3 3.4 27 8-34 25-51 (241)
106 PF00692 dUTPase: dUTPase; In 22.1 44 0.00095 21.5 0.8 25 31-55 14-38 (129)
107 cd03224 ABC_TM1139_LivF_branch 22.0 1.4E+02 0.003 20.2 3.2 27 8-34 24-50 (222)
108 COG1125 OpuBA ABC-type proline 22.0 40 0.00086 27.3 0.7 16 7-22 183-198 (309)
109 cd05006 SIS_GmhA Phosphoheptos 22.0 1.2E+02 0.0026 20.2 3.0 24 8-31 100-123 (177)
110 PRK11124 artP arginine transpo 22.0 1.4E+02 0.0031 20.6 3.4 27 8-34 26-52 (242)
111 cd08582 GDPD_like_2 Glyceropho 21.9 57 0.0012 22.7 1.4 17 5-21 33-49 (233)
112 TIGR03882 cyclo_dehyd_2 bacter 21.6 1.9E+02 0.004 20.5 4.0 41 10-54 105-148 (193)
113 cd03223 ABCD_peroxisomal_ALDP 21.5 1.6E+02 0.0034 19.6 3.4 26 9-34 26-51 (166)
114 cd03820 GT1_amsD_like This fam 21.5 1E+02 0.0022 20.0 2.4 30 7-36 249-280 (348)
115 cd03246 ABCC_Protease_Secretio 21.5 1.5E+02 0.0032 19.6 3.2 27 8-34 26-52 (173)
116 TIGR01189 ccmA heme ABC export 21.5 1.5E+02 0.0033 19.9 3.4 27 8-34 24-50 (198)
117 cd03217 ABC_FeS_Assembly ABC-t 21.4 1.5E+02 0.0032 20.1 3.3 38 8-50 24-61 (200)
118 PRK10908 cell division protein 21.4 1.5E+02 0.0033 20.1 3.4 27 8-34 26-52 (222)
119 PRK11264 putative amino-acid A 21.4 1.5E+02 0.0033 20.5 3.4 27 8-34 27-53 (250)
120 TIGR01644 phage_P2_V phage bas 21.4 69 0.0015 22.2 1.7 39 10-51 55-94 (191)
121 cd03295 ABC_OpuCA_Osmoprotecti 21.3 1.5E+02 0.0033 20.5 3.4 26 9-34 26-51 (242)
122 cd03259 ABC_Carb_Solutes_like 21.3 1.5E+02 0.0033 19.9 3.4 27 8-34 24-50 (213)
123 cd03257 ABC_NikE_OppD_transpor 21.0 1.6E+02 0.0035 19.9 3.4 27 8-34 29-55 (228)
124 TIGR01426 MGT glycosyltransfer 20.9 98 0.0021 22.7 2.5 21 14-35 294-314 (392)
125 PF03009 GDPD: Glycerophosphor 20.8 62 0.0014 21.3 1.3 13 7-19 32-44 (256)
126 PF01159 Ribosomal_L6e: Riboso 20.8 33 0.00072 23.4 0.0 24 30-55 1-25 (108)
127 PRK10895 lipopolysaccharide AB 20.7 1.6E+02 0.0034 20.3 3.4 27 8-34 27-53 (241)
128 PRK13539 cytochrome c biogenes 20.6 1.6E+02 0.0035 20.0 3.4 27 8-34 26-52 (207)
129 PRK10886 DnaA initiator-associ 20.6 1.3E+02 0.0027 21.7 3.0 23 9-31 109-131 (196)
130 cd03255 ABC_MJ0796_Lo1CDE_FtsE 20.5 1.6E+02 0.0036 19.8 3.4 27 8-34 28-54 (218)
131 cd03254 ABCC_Glucan_exporter_l 20.4 1.6E+02 0.0036 20.0 3.4 27 8-34 27-53 (229)
132 cd05710 SIS_1 A subgroup of th 20.3 1.4E+02 0.0031 18.9 2.9 23 9-31 47-69 (120)
133 TIGR03411 urea_trans_UrtD urea 20.3 1.6E+02 0.0035 20.3 3.3 26 8-33 26-51 (242)
134 TIGR03873 F420-0_ABC_ATP propo 20.3 1.6E+02 0.0034 20.7 3.4 27 8-34 25-51 (256)
135 PRK14250 phosphate ABC transpo 20.2 1.6E+02 0.0035 20.5 3.4 36 8-50 27-62 (241)
136 PF11883 DUF3403: Domain of un 20.2 63 0.0014 19.0 1.1 16 52-67 2-17 (48)
137 TIGR01978 sufC FeS assembly AT 20.2 1.7E+02 0.0036 20.0 3.4 27 8-34 24-50 (243)
138 TIGR01133 murG undecaprenyldip 20.1 1E+02 0.0022 21.6 2.4 28 7-36 247-274 (348)
139 PRK11629 lolD lipoprotein tran 20.1 1.7E+02 0.0036 20.2 3.4 27 8-34 33-59 (233)
140 PRK13936 phosphoheptose isomer 20.0 1.3E+02 0.0029 20.9 3.0 22 9-30 111-132 (197)
No 1
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=98.04 E-value=2.8e-06 Score=58.05 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=46.8
Q ss_pred ccceeeecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecC
Q 035014 3 ILETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTS 54 (76)
Q Consensus 3 ~LEtqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~ 54 (76)
.+++++.+++||||+| |..+.+|.+.++|+++.+..++.+.+|.+..+++.
T Consensus 134 ~l~~~~~~~~iliVsH-g~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 184 (199)
T PRK15004 134 RLSAFQHYQNLLIVSH-QGVLSLLIARLLGMPAEAMWHFRVEQGCWSAIDIN 184 (199)
T ss_pred HHHHhCCCCeEEEEcC-hHHHHHHHHHHhCCCHHHHhccccCCceEEEEEec
Confidence 4667788999999999 99999999999999999988899999999999885
No 2
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=97.72 E-value=1.5e-05 Score=52.45 Aligned_cols=47 Identities=26% Similarity=0.355 Sum_probs=41.6
Q ss_pred ccceeeecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEE
Q 035014 3 ILETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRF 50 (76)
Q Consensus 3 ~LEtqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~ 50 (76)
.|++++.+++||||+| |..+..|.+.+.|.|..+...+.+.+|+|..
T Consensus 130 ~l~~~~~~~~vlvVsH-g~~i~~l~~~~~~~~~~~~~~~~~~n~~i~~ 176 (177)
T TIGR03162 130 ELLKAHEGDNVLIVTH-GGVIRALLAHLLGLPLEQWWSFDVEYGSITL 176 (177)
T ss_pred HHHHhCCCCeEEEEEC-HHHHHHHHHHHhCCCHHHHhccccCCeeEEe
Confidence 4556778899999999 9999999999999999888889999999864
No 3
>PRK03482 phosphoglycerate mutase; Provisional
Probab=97.50 E-value=7.8e-05 Score=51.36 Aligned_cols=51 Identities=20% Similarity=0.181 Sum_probs=45.0
Q ss_pred cceeeecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 4 LETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 4 LEtqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
+..++.|++||||+| |..+.+|.+.+.|+|+.....+.+..|.+..++.+.
T Consensus 136 ~~~~~~~~~vliVsH-g~~i~~l~~~l~~~~~~~~~~~~~~n~sis~~~~~~ 186 (215)
T PRK03482 136 CLELPQGSRPLLVSH-GIALGCLVSTILGLPAWAERRLRLRNCSISRVDYQE 186 (215)
T ss_pred HHHhCCCCeEEEEeC-cHHHHHHHHHHhCCChhhhhccCCCCcEEEEEEEeC
Confidence 345677899999999 999999999999999998888899999999998754
No 4
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=97.40 E-value=0.00016 Score=51.31 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=43.6
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
+.|++|||||| |..+.+|.+.+.|+++....++.+..|++..+|++.
T Consensus 172 ~~~~~vlvVsH-g~vir~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T PRK14116 172 LDGKNVIIAAH-GNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDE 218 (228)
T ss_pred cCCCeEEEEcC-hHHHHHHHHHHhCCCHHHHHhccCCCCCeEEEEECC
Confidence 47899999999 999999999999999999989999999999988764
No 5
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=97.34 E-value=0.0003 Score=48.12 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=42.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
+.|++||||+| |..+..|.+.++|+++..+.++.+..++|..+++..
T Consensus 142 ~~~~~vliVsH-g~~ir~ll~~~lg~~~~~~~~~~~~n~sit~l~~~~ 188 (204)
T TIGR03848 142 GPDAVWVACSH-GDVIKSVLADALGMHLDLFQRIVVDPCSVSVVRYTP 188 (204)
T ss_pred CCCCEEEEEeC-ChHHHHHHHHHhCCCHHHhheeeeCCCeEEEEEEeC
Confidence 46889999999 999999999999999998888999999999998753
No 6
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=97.22 E-value=0.00025 Score=51.78 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=46.8
Q ss_pred cceeeecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 4 LETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 4 LEtqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
+++.+.|++|||||| |+.+..|.+.+.|+++..-..+.+..|.+..++++.
T Consensus 169 ~~~~~~~~~iliVsH-ggvir~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 219 (249)
T PRK14120 169 VPDLKAGKTVLIAAH-GNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDE 219 (249)
T ss_pred HHHhhCCCEEEEEeC-HHHHHHHHHHHhCCCHHHhheeccCCCceEEEEECC
Confidence 456678999999999 999999999999999999989999999999999866
No 7
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=97.18 E-value=0.00036 Score=50.65 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=43.7
Q ss_pred eeecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 7 QYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 7 qYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
.+.|++|||||| |..+.+|.+.+.|+|+.....+.+.-|.+..+++..
T Consensus 170 ~~~~~~vlvVsH-g~vir~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 217 (245)
T TIGR01258 170 LLSGKRVLIVAH-GNSLRALVKHLEGISDEEILELNIPTGIPLVYELDE 217 (245)
T ss_pred hcCCCEEEEEcC-hHHHHHHHHHHHCcCHHHHhheecCCCceEEEEECC
Confidence 467899999999 999999999999999998888899999999998754
No 8
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=97.08 E-value=0.00057 Score=48.72 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=42.4
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
..|++|||||| |..+.+|.+.+.|+++.....+.+..|++..+++..
T Consensus 172 ~~~~~vlvVsH-g~~ir~ll~~~lg~~~~~~~~~~~~n~s~~~i~~~~ 218 (230)
T PRK14117 172 KDGKNVFVGAH-GNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDE 218 (230)
T ss_pred cCCCEEEEEeC-hHHHHHHHHHHhCcCHHHHhhcCCCCceEEEEEECC
Confidence 35789999999 999999999999999998888899999999998743
No 9
>PRK13462 acid phosphatase; Provisional
Probab=97.07 E-value=0.0004 Score=48.66 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=43.5
Q ss_pred ceeeecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecC
Q 035014 5 ETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTS 54 (76)
Q Consensus 5 EtqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~ 54 (76)
..++.+++||||+| |..+..|.+.++|.|+.....+.+.+|.+..+++.
T Consensus 134 ~~~~~~~~vliVsH-g~vir~ll~~~l~~~~~~~~~~~~~~~s~s~~~~~ 182 (203)
T PRK13462 134 LEHMESRDVVFVSH-GHFSRAVITRWVELPLAEGSRFAMPTASIAICGFE 182 (203)
T ss_pred HHhCCCCCEEEEeC-CHHHHHHHHHHhCCCHHHhhhcccCCceEEEEEee
Confidence 35678899999999 99999999999999998777889999999999874
No 10
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=97.02 E-value=0.00042 Score=44.15 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=43.8
Q ss_pred cceeeecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 4 LETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 4 LEtqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
+..++.|++|+||+| +..+..+.+.+.|.+...-..+.+.+|.+..++.+.
T Consensus 93 l~~~~~~~~iliV~H-~~~i~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~ 143 (153)
T cd07067 93 LIAPHDGKNVLIVSH-GGVLRALLAYLLGLSDEDILRLNLPNGSISVLELDE 143 (153)
T ss_pred HHHhCCCCeEEEEeC-hHHHHHHHHHHhCCCHHHHHhcCCCCceEEEEEEeC
Confidence 334557899999999 999999999999999887767889999999998754
No 11
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=97.02 E-value=0.00047 Score=46.68 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=45.6
Q ss_pred ccceeeecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 3 ILETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 3 ~LEtqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
.++.++.+++|++||| |..+.+|.+.+.|.++.....+.+..+.|..++++.
T Consensus 138 ~~~~~~~~~~vlvVsH-g~~ir~l~~~~~~~~~~~~~~~~~~~~si~~l~~~~ 189 (208)
T COG0406 138 ELLRSPPGNNVLVVSH-GGVIRALLAYLLGLDLEELWRLRLDNASVTVLEFDD 189 (208)
T ss_pred HHHHhcCCCeEEEEEC-hHHHHHHHHHhcCCChhhHHhcCCCCceEEEEEeeC
Confidence 4566777789999999 999999999999999986667999999999988875
No 12
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=97.01 E-value=0.00059 Score=49.59 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=43.6
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
+.|++|||||| |..+.++.+.+.|.++.....+.+..|.+..++.+.
T Consensus 171 ~~~~~vlvVtH-ggvir~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~~ 217 (247)
T PRK14115 171 KSGKRVLIAAH-GNSLRALVKYLDNISDEEILELNIPTGVPLVYELDE 217 (247)
T ss_pred cCCCeEEEEeC-hHHHHHHHHHHhCCCHHHhheeecCCCceEEEEECC
Confidence 57899999999 999999999999999998889999999999988865
No 13
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=97.01 E-value=0.00072 Score=47.99 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=42.8
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
+.|++|||||| |..+.+|.+.+.|+++.....+.+..|++..+++..
T Consensus 171 ~~~~~vlvVsH-ggvir~ll~~~l~~~~~~~~~~~i~~~s~~~~~~~~ 217 (227)
T PRK14118 171 LSGKRVLVAAH-GNSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDD 217 (227)
T ss_pred cCCCeEEEEeC-HHHHHHHHHHHhCCCHHHHhcccCCCCceEEEEECC
Confidence 56899999999 999999999999999998888899999999988854
No 14
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=96.99 E-value=0.00061 Score=48.73 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=43.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
..|++|||||| |..+.++.+.++|+++.+-.++.+..|++..+|++.
T Consensus 159 ~~~~~vliVsH-G~vir~ll~~l~~~~~~~~~~~~~~n~~~~~~~~~~ 205 (236)
T PTZ00123 159 LAGKKVLVAAH-GNSLRALVKYLDKMSEEDILELNIPTGVPLVYELDE 205 (236)
T ss_pred hCCCeEEEEeC-HHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECC
Confidence 56899999999 999999999999999988888999999999999876
No 15
>PRK01295 phosphoglyceromutase; Provisional
Probab=96.87 E-value=0.0011 Score=46.41 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=45.3
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCCCCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSSIPT 58 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~~p~ 58 (76)
..|++||||+| |..+..+.+-+.|+++.....+.+..|.+....++.+++
T Consensus 148 ~~~~~vliVtH-g~~ir~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (206)
T PRK01295 148 LRGERVLVAAH-GNSLRALVMVLDGLTPEQILKLELATGVPIVYRLNADST 197 (206)
T ss_pred cCCCeEEEEcC-hHHHHHHHHHHhCCCHHHHhhcCCCCCCcEEEEecCCCC
Confidence 47899999999 999999999999999998888999999988888887766
No 16
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=96.80 E-value=0.00074 Score=50.56 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=45.1
Q ss_pred ccceeeecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecC
Q 035014 3 ILETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTS 54 (76)
Q Consensus 3 ~LEtqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~ 54 (76)
.|+.++.|++||||+| |..+..+.+.++|.++.....+.+.-+.+..+++.
T Consensus 305 ~l~~~~~~~~vlvVtH-g~~ir~ll~~~l~~~~~~~~~~~~~~~~~s~l~~~ 355 (372)
T PRK07238 305 RLIAEYPGATVLVVSH-VTPIKTLLRLALDAGPGVLYRLHLDLASLSIAEFY 355 (372)
T ss_pred HHHHHCCCCeEEEEEC-hHHHHHHHHHHhCCCHHHhhhcccCCceEEEEEEE
Confidence 3556788999999999 99999999999999999888888889999888874
No 17
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=96.79 E-value=0.0014 Score=46.34 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=41.8
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
.|++||||+| |..+.+|.+.+.|+++..-..+.+..|++..++++.
T Consensus 173 ~~~~vlvVsH-g~vir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (228)
T PRK14119 173 DGQTVLVSAH-GNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTD 218 (228)
T ss_pred CCCeEEEEeC-hHHHHHHHHHHhCCCHHHHhhcCCCCCceEEEEECC
Confidence 6899999999 999999999999999987777889999999988764
No 18
>PRK01112 phosphoglyceromutase; Provisional
Probab=96.51 E-value=0.0023 Score=45.91 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=42.3
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
.|++|+||+| |..+.++.+.+.|+|...-..+.+.-|.+..++++.
T Consensus 172 ~~~~ilVVsH-g~vir~l~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T PRK01112 172 QGKNVFVSAH-GNSLRSLIMDLEKLSEEEVLSLELPTGKPIVYEWTG 217 (228)
T ss_pred CCCeEEEEeC-HHHHHHHHHHHhCCCHHHHhhcccCCcceEEEEECC
Confidence 6899999999 999999999999999998888999999999988865
No 19
>PRK13463 phosphatase PhoE; Provisional
Probab=96.43 E-value=0.0028 Score=43.79 Aligned_cols=48 Identities=10% Similarity=0.268 Sum_probs=40.9
Q ss_pred eeeecCeEEEEcCCCCcHHHHHHHhhCCcccccccc-cccCceeEEeecC
Q 035014 6 TQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHREL-SFAPGEVRFVDTS 54 (76)
Q Consensus 6 tqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~-~f~pgEVR~vd~~ 54 (76)
.++.|++||||+| |..+.++.+.++|+++...... .+..|.+..++++
T Consensus 139 ~~~~~~~vlvVsH-g~~ir~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 187 (203)
T PRK13463 139 EKHKGESILIVSH-AAAAKLLVGHFAGIEIENVWDDPFMHSASLSIIEFE 187 (203)
T ss_pred HhCCCCEEEEEeC-hHHHHHHHHHHhCCCHHHHhhccCccCceEEEEEEe
Confidence 4578899999999 9999999999999999877664 3578999988873
No 20
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=95.41 E-value=0.021 Score=43.12 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=39.6
Q ss_pred cCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecC
Q 035014 10 EDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTS 54 (76)
Q Consensus 10 GetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~ 54 (76)
+++||||+| |..+.+|.+.++|+|+....++.+..++|..+++.
T Consensus 232 ~~~vLVVsH-GgvIR~ll~~lLglp~~~~~~~~~~N~sit~l~~~ 275 (299)
T PTZ00122 232 DSVEIIVCH-GNVIRYLVCRALQLPPEAWLRLSLYNCGITWIVIS 275 (299)
T ss_pred CCeEEEEeC-ChHHHHHHHHHhCcCHHHHhhccCCCceEEEEEEe
Confidence 467899999 99999999999999998877888899999998875
No 21
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=95.04 E-value=0.035 Score=34.52 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=40.9
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCCC
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSSI 56 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~~ 56 (76)
.++.|++|+| +..+..+.+.+.+.+......+.+.+|.+..++...-
T Consensus 98 ~~~~iliv~H-~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (153)
T cd07040 98 DGKNVLIVSH-GGTIRALLAALLGLSDEEILSLNLPNGSILVLELDEC 144 (153)
T ss_pred CCCEEEEEeC-CHHHHHHHHHHhCcCHHHhccccCCCCceEEEEEcCC
Confidence 5789999999 8999999999999988877778899999998887654
No 22
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=84.55 E-value=0.85 Score=37.60 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=33.8
Q ss_pred cCeEEEEcCCCCcHHHHHHHhhCC-----cccccccccccCceeEEeecC
Q 035014 10 EDTVIIVSPDSDNLSILQAGLIGL-----DLRRHRELSFAPGEVRFVDTS 54 (76)
Q Consensus 10 GetIllVSpdgD~LsiL~a~l~G~-----dLrrHre~~f~pgEVR~vd~~ 54 (76)
.++||||+| |..+.+|.+.++|. ++..-..+.+..+.|..++..
T Consensus 577 ~~~ilvVsH-g~vir~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~ 625 (664)
T PTZ00322 577 TTPVLVVSH-LHLLQGLYSYFVTDGDNIVAPQNAYKIDIPFEHVIKIRMV 625 (664)
T ss_pred CCCEEEEeC-cHHHHHHHHHHhcCCccccCcccCceeeccCCcEEEEEEe
Confidence 378999999 99999999999996 444444566777777776654
No 23
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=82.91 E-value=3.4 Score=27.76 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=32.7
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecC
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTS 54 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~ 54 (76)
.+++|+||+| +-.++-|...|.|.. ..+.|.+|.+-.++..
T Consensus 99 ~~~~vliVgH-~P~i~~l~~~l~~~~----~~~~~~~~~~~~l~~~ 139 (152)
T TIGR00249 99 GVASVLLVSH-LPLVGYLVAELCPGE----NPIMFTTGAIASLLWD 139 (152)
T ss_pred CCCEEEEEeC-CCCHHHHHHHHhCCC----CCCcCcceeEEEEEEe
Confidence 3679999999 778888888887752 1367999999998875
No 24
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=77.56 E-value=2.3 Score=33.08 Aligned_cols=30 Identities=27% Similarity=0.533 Sum_probs=26.3
Q ss_pred eeeecCeEEEEcCCCCcHHHHHHHhhCCccc
Q 035014 6 TQYSEDTVIIVSPDSDNLSILQAGLIGLDLR 36 (76)
Q Consensus 6 tqYsGetIllVSpdgD~LsiL~a~l~G~dLr 36 (76)
.+|.+++||||+| |.++..-.+-+.|.+-+
T Consensus 190 ~k~~~~~lLIV~H-~~sv~~~~~~l~~~~~~ 219 (272)
T KOG3734|consen 190 DKYPNENLLIVAH-GSSVDTCSAQLQGLPVR 219 (272)
T ss_pred HhcCCCceEEEec-cchHHHHHHHhcCCCce
Confidence 4789999999999 99999999999995544
No 25
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=71.82 E-value=4.7 Score=31.19 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=34.8
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEE
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRF 50 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~ 50 (76)
+|++||||.| |+.|-.|---|-|+.=+.-.++....|-=-.
T Consensus 173 ~Gk~VlI~AH-GNSlRaLiK~L~~iSd~dI~~l~IPtg~Plv 213 (230)
T COG0588 173 SGKNVLIVAH-GNSLRALIKYLEGISDEDILDLNIPTGIPLV 213 (230)
T ss_pred CCCeEEEEec-chhHHHHHHHHhCCCHHHhhhcccCCCCcEE
Confidence 7999999999 9999999999999988887777776665333
No 26
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=63.64 E-value=3.3 Score=34.23 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=19.0
Q ss_pred eeecCeEEEEcCCCCcHHHHHHHhhCC
Q 035014 7 QYSEDTVIIVSPDSDNLSILQAGLIGL 33 (76)
Q Consensus 7 qYsGetIllVSpdgD~LsiL~a~l~G~ 33 (76)
.|.| +|||||||-+=|.=..+-+.=+
T Consensus 198 ~~~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 198 RYPG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred hCCC-cEEEEeCCHHHHHHHhhheEEe
Confidence 6889 9999999987666555544433
No 27
>COG3521 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.87 E-value=4.7 Score=29.35 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.7
Q ss_pred hhCCcccccccccccCceeEEeecC
Q 035014 30 LIGLDLRRHRELSFAPGEVRFVDTS 54 (76)
Q Consensus 30 l~G~dLrrHre~~f~pgEVR~vd~~ 54 (76)
-+|.||=+|+|+.+.|||.+.++..
T Consensus 81 tLg~dlv~~~e~~L~Pge~k~l~~~ 105 (159)
T COG3521 81 TLGGDLVDVDEYILLPGETKTLSRT 105 (159)
T ss_pred hcccccccceeEEEcCCceEEecCC
Confidence 4689999999999999999998876
No 28
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=60.73 E-value=22 Score=24.49 Aligned_cols=42 Identities=24% Similarity=0.481 Sum_probs=31.7
Q ss_pred ecCeEEEEcCCCCcHHHHHHHh--hCCcccccccccccCceeEEeecC
Q 035014 9 SEDTVIIVSPDSDNLSILQAGL--IGLDLRRHRELSFAPGEVRFVDTS 54 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l--~G~dLrrHre~~f~pgEVR~vd~~ 54 (76)
.||.+++|.+|..+...+...| .|.|+ +-....|+++.+|..
T Consensus 46 ~ge~~l~v~~~~~~~~~l~~~L~~~~~d~----~~~~~~gqL~~~~~~ 89 (191)
T PF14417_consen 46 RGERCLYVAPDPRRVEELRDELRKAGPDV----EQYLDSGQLELLDAE 89 (191)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHhcCCch----hhcccCCCEEEecch
Confidence 4899999999888887777777 35555 456677888888764
No 29
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=60.54 E-value=13 Score=27.88 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=39.7
Q ss_pred ceeeecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeec
Q 035014 5 ETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDT 53 (76)
Q Consensus 5 EtqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~ 53 (76)
..+-+|.+||||+| |.-|.-+..-+.|+.--.+-.+.+..|=....|+
T Consensus 151 ~~~~~gk~Vli~aH-GnsLR~i~~~l~g~s~~~i~~~~~~t~vp~v~~l 198 (214)
T KOG0235|consen 151 KESKEGKNVLIVAH-GNSLRAIVKHLEGISDEAIKELNLPTGVPIVYEL 198 (214)
T ss_pred hhhcCCcEEEEEcC-cHHHHHHHHHHhcCCHhhhhheecccCCceEEEc
Confidence 45668999999999 9888888888899988888888888887776444
No 30
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=59.68 E-value=27 Score=23.71 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=31.0
Q ss_pred cCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecC
Q 035014 10 EDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTS 54 (76)
Q Consensus 10 GetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~ 54 (76)
.++|+||+| .-.++-|.+.|.|-.- ...|.+|.+..++..
T Consensus 100 ~~~vllVgH-~P~l~~l~~~L~~~~~----~~~~~t~~i~~l~~~ 139 (159)
T PRK10848 100 VASVLVISH-LPLVGYLVAELCPGET----PPMFTTSAIACVTLD 139 (159)
T ss_pred CCeEEEEeC-cCcHHHHHHHHhCCCC----CCCcCCceEEEEEec
Confidence 469999999 8888888888775321 124899999998876
No 31
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=55.45 E-value=11 Score=23.58 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=13.1
Q ss_pred CeEEEEcCCCCcHHHHHHH
Q 035014 11 DTVIIVSPDSDNLSILQAG 29 (76)
Q Consensus 11 etIllVSpdgD~LsiL~a~ 29 (76)
++|+|||-|+|=..++..+
T Consensus 97 d~ivLvSgD~Df~~~v~~l 115 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKL 115 (146)
T ss_dssp SEEEEE---GGGHHHHHHH
T ss_pred CEEEEEECcHHHHHHHHHH
Confidence 9999999999977776654
No 32
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=53.90 E-value=15 Score=23.41 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.0
Q ss_pred cCeEEEEcCCCCcHHHHHHH
Q 035014 10 EDTVIIVSPDSDNLSILQAG 29 (76)
Q Consensus 10 GetIllVSpdgD~LsiL~a~ 29 (76)
-++|+|||-|+|=..++..+
T Consensus 100 ~d~ivLvSgD~Df~~~i~~l 119 (149)
T cd06167 100 IDTIVLVSGDSDFVPLVERL 119 (149)
T ss_pred CCEEEEEECCccHHHHHHHH
Confidence 68999999999988777654
No 33
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.18 E-value=19 Score=28.04 Aligned_cols=36 Identities=44% Similarity=0.577 Sum_probs=30.3
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEe
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFV 51 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~v 51 (76)
-||+|-||-|.|.+=|-|.+.|+|+|.- .-||||.+
T Consensus 35 ~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-------ssGeV~l~ 70 (228)
T COG4181 35 RGETVAIVGPSGSGKSTLLAVLAGLDDP-------SSGEVRLL 70 (228)
T ss_pred CCceEEEEcCCCCcHHhHHHHHhcCCCC-------CCceEEEc
Confidence 4999999999999999999999999864 34666654
No 34
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=51.97 E-value=6.7 Score=27.38 Aligned_cols=18 Identities=44% Similarity=0.486 Sum_probs=14.5
Q ss_pred cCeEEEEcCCCCcHHHHH
Q 035014 10 EDTVIIVSPDSDNLSILQ 27 (76)
Q Consensus 10 GetIllVSpdgD~LsiL~ 27 (76)
|..|+|||.|.|=+|++.
T Consensus 125 ~~~v~IvS~DkD~~QLv~ 142 (169)
T PF02739_consen 125 GFEVIIVSGDKDLLQLVD 142 (169)
T ss_dssp TCEEEEE-SSGGGGGGTC
T ss_pred CCEEEEEcCCCCHHHhcC
Confidence 568999999999998763
No 35
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=51.10 E-value=12 Score=28.72 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=27.8
Q ss_pred eeeecCeEEEEcCCCCcHHHHHHHhhCCcccccc
Q 035014 6 TQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHR 39 (76)
Q Consensus 6 tqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHr 39 (76)
.+..+-.|+||++.+-.+.++.+.|.|+.+.-.|
T Consensus 113 ~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr 146 (297)
T PF11496_consen 113 RREYPLHILIVSRSGKELDLLEGLLLGKKLNYKR 146 (297)
T ss_dssp -TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEE
T ss_pred cccCCceEEEEecCccHHHHHHHHHccCCeeEEe
Confidence 4666788999999999999999999999987544
No 36
>PF12040 DUF3526: Domain of unknown function (DUF3526); InterPro: IPR021913 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 149 to 170 amino acids in length. This domain has a single completely conserved residue P that may be functionally important.
Probab=50.14 E-value=3 Score=28.47 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEcCCCCcHHHHHHHhhCCcccccccc
Q 035014 15 IVSPDSDNLSILQAGLIGLDLRRHREL 41 (76)
Q Consensus 15 lVSpdgD~LsiL~a~l~G~dLrrHre~ 41 (76)
++|| .=-++-++.+|+|+|+.+|+++
T Consensus 85 ~lsP-~la~q~~s~~lAgTD~~~~~~F 110 (156)
T PF12040_consen 85 WLSP-ALAVQSLSMRLAGTDLAHHLDF 110 (156)
T ss_pred HhCH-HHHHHHHHHHHHCCCHHHHHHH
Confidence 4677 5556678889999999999864
No 37
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=44.67 E-value=11 Score=27.19 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=20.8
Q ss_pred ccceeeec--CeEEEEcCCCCcHHHHHHH
Q 035014 3 ILETQYSE--DTVIIVSPDSDNLSILQAG 29 (76)
Q Consensus 3 ~LEtqYsG--etIllVSpdgD~LsiL~a~ 29 (76)
.+|.-|++ |+++|||-|||=--+...+
T Consensus 97 ame~~~~~~iD~~vLvSgD~DF~~Lv~~l 125 (160)
T TIGR00288 97 AMELIYNPNIDAVALVTRDADFLPVINKA 125 (160)
T ss_pred HHHHhccCCCCEEEEEeccHhHHHHHHHH
Confidence 35666777 8999999999977666543
No 38
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=43.35 E-value=13 Score=22.44 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=21.9
Q ss_pred hCCccccccc---ccccCceeEEeecCC
Q 035014 31 IGLDLRRHRE---LSFAPGEVRFVDTSS 55 (76)
Q Consensus 31 ~G~dLrrHre---~~f~pgEVR~vd~~~ 55 (76)
+|.||+-..+ +-+.|+|...|++.-
T Consensus 1 ag~Dl~~~~~~~~~~i~P~~~~~v~t~~ 28 (92)
T cd07557 1 AGYDLRLGEDFEGIVLPPGETVLVPTGE 28 (92)
T ss_pred CcEEEEcCCcCCCEEEcCCCEEEEEEeE
Confidence 5889999888 999999999988875
No 39
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=40.22 E-value=44 Score=20.09 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.0
Q ss_pred ecCeEEEEcCCCCcHHHHHHH
Q 035014 9 SEDTVIIVSPDSDNLSILQAG 29 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~ 29 (76)
.++-+|++|..|.+..+++++
T Consensus 60 ~~~~~i~iS~~g~~~~~~~~~ 80 (139)
T cd05013 60 PGDVVIAISFSGETKETVEAA 80 (139)
T ss_pred CCCEEEEEeCCCCCHHHHHHH
Confidence 478899999999998887766
No 40
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=39.97 E-value=30 Score=25.54 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=20.4
Q ss_pred eeecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 7 QYSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 7 qYsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
++.+++||||.| +-+++-|...+.|..
T Consensus 148 ~~~~~tVLIVGH-np~i~~La~~~~~~~ 174 (201)
T PRK15416 148 KSPDKNIVIFTH-NHCLTYIAKDKRGVK 174 (201)
T ss_pred hCCCCEEEEEeC-chhHHHHHHHhcCCC
Confidence 345689999999 888888877655543
No 41
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=37.51 E-value=44 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=19.3
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIG 32 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G 32 (76)
-.||.+|++|--|.+.-++.|+..-
T Consensus 102 ~~gDvli~iS~SG~s~~vi~a~~~A 126 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSPNVIEAAEEA 126 (138)
T ss_dssp -TT-EEEEEESSS-SHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999988653
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=37.30 E-value=34 Score=22.16 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=15.5
Q ss_pred EEEcCCCCcHHHHHHHhhCCcc
Q 035014 14 IIVSPDSDNLSILQAGLIGLDL 35 (76)
Q Consensus 14 llVSpdgD~LsiL~a~l~G~dL 35 (76)
|+||| +...++..++-.|+|+
T Consensus 75 lvIs~-aG~~Ti~E~l~~g~P~ 95 (167)
T PF04101_consen 75 LVISH-AGAGTIAEALALGKPA 95 (167)
T ss_dssp EEEEC-S-CHHHHHHHHCT--E
T ss_pred EEEeC-CCccHHHHHHHcCCCe
Confidence 67888 8888999999999885
No 43
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=36.61 E-value=51 Score=20.26 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=18.3
Q ss_pred ecCeEEEEcCCCCcHHHHHHHh
Q 035014 9 SEDTVIIVSPDSDNLSILQAGL 30 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l 30 (76)
.++.+|++|+.|.+-.++.++=
T Consensus 46 ~~d~~I~iS~sG~t~e~~~~~~ 67 (126)
T cd05008 46 EDTLVIAISQSGETADTLAALR 67 (126)
T ss_pred CCcEEEEEeCCcCCHHHHHHHH
Confidence 5788999999999988877653
No 44
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=35.16 E-value=76 Score=19.53 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=25.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCccc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLR 36 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLr 36 (76)
..|+.+.|+-+.|-+=|-|.-+|+|.--.
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred cCCCEEEEEccCCCccccceeeecccccc
Confidence 57999999999999999999999998543
No 45
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=34.99 E-value=55 Score=20.63 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=19.3
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhh
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLI 31 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~ 31 (76)
.++.+|++|..|.+..++.++-.
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~ 65 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQ 65 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHH
Confidence 47889999999999999887644
No 46
>PHA02567 rnh RnaseH; Provisional
Probab=34.70 E-value=23 Score=27.99 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.4
Q ss_pred ecCeEEEEcCCCCcHHHHH
Q 035014 9 SEDTVIIVSPDSDNLSILQ 27 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~ 27 (76)
.|..|+|||.|.|=+|++.
T Consensus 145 ~g~~VvIvS~DKDl~QLv~ 163 (304)
T PHA02567 145 EGRPVLIVSSDGDFTQLHK 163 (304)
T ss_pred CCCcEEEEeCCCChhhccC
Confidence 3678999999999999873
No 47
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=33.45 E-value=24 Score=24.33 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=24.8
Q ss_pred HHhhCCcccccccccccCceeEEeecCCCCC
Q 035014 28 AGLIGLDLRRHRELSFAPGEVRFVDTSSIPT 58 (76)
Q Consensus 28 a~l~G~dLrrHre~~f~pgEVR~vd~~~~p~ 58 (76)
...+|-+|=.++|+.+.|||.+.+++..-+.
T Consensus 75 ~~~Lg~~ll~~~e~~l~PG~~~~~~~~~~~~ 105 (146)
T TIGR03352 75 KKALGDDLIEQDEIILLPGEKRKITITLDPG 105 (146)
T ss_pred HHHHHHHHhhcceEEECCCCeeEeeeecCCC
Confidence 3456889999999999999998877665443
No 48
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=32.93 E-value=33 Score=24.93 Aligned_cols=18 Identities=39% Similarity=0.492 Sum_probs=16.2
Q ss_pred ecCeEEEEcCCCCcHHHH
Q 035014 9 SEDTVIIVSPDSDNLSIL 26 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL 26 (76)
.|+.++|||.|.|-++++
T Consensus 123 ~g~~~~I~S~DkD~~ql~ 140 (240)
T cd00008 123 EGYKVVIVSGDKDLLQLV 140 (240)
T ss_pred cCCeEEEEeCCCChhhhC
Confidence 478999999999999887
No 49
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=32.19 E-value=36 Score=23.94 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=21.5
Q ss_pred ccceee--ecCeEEEEcCCCCcHHHHHHH
Q 035014 3 ILETQY--SEDTVIIVSPDSDNLSILQAG 29 (76)
Q Consensus 3 ~LEtqY--sGetIllVSpdgD~LsiL~a~ 29 (76)
.+|.-+ .=++|+|+|-|||=..++.++
T Consensus 102 ~~~l~~~~~~D~ivl~SgD~DF~p~v~~~ 130 (181)
T COG1432 102 AMELADKKNVDTIVLFSGDGDFIPLVEAA 130 (181)
T ss_pred HHHhhcccCCCEEEEEcCCccHHHHHHHH
Confidence 345556 668999999999988887776
No 50
>PF08883 DOPA_dioxygen: Dopa 4,5-dioxygenase family; InterPro: IPR014980 This family of proteins is related to P87064 from SWISSPROT a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore. ; PDB: 2NYH_A 2P8I_C.
Probab=32.07 E-value=1.5 Score=29.69 Aligned_cols=32 Identities=38% Similarity=0.359 Sum_probs=18.4
Q ss_pred HHHHHHHhhCCcccccccccccCceeEEeecC
Q 035014 23 LSILQAGLIGLDLRRHRELSFAPGEVRFVDTS 54 (76)
Q Consensus 23 LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~ 54 (76)
||||-=...|-||+.|.+.++=-|+-..+|++
T Consensus 71 LsVLiHP~Tg~dl~DHt~~A~WlG~~~~L~~s 102 (104)
T PF08883_consen 71 LSVLIHPNTGDDLRDHTDHAMWLGEPLPLDLS 102 (104)
T ss_dssp --EEEEEESS-HHHHHHHS-EEESS-----GG
T ss_pred ceEEEcCCCCchhhhhhhccEeCCCccccccc
Confidence 34444446788999999999999999998876
No 51
>PRK13956 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=31.59 E-value=35 Score=23.93 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.2
Q ss_pred HhhCCcccccccccccCceeEEeecCC
Q 035014 29 GLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 29 ~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
+=+|.||+-..++-+.|||...|.+.-
T Consensus 25 ~sAG~DL~a~~~~~i~p~~~~lv~TGi 51 (147)
T PRK13956 25 HAAGYDLKVAERTVIAPGEIKLVPTGV 51 (147)
T ss_pred CCCCcccccCCCeEECCCCEEEEECCe
Confidence 346999999889999999999988765
No 52
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=30.83 E-value=1.3e+02 Score=22.14 Aligned_cols=37 Identities=24% Similarity=0.541 Sum_probs=31.7
Q ss_pred cCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCCCCC
Q 035014 10 EDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSSIPT 58 (76)
Q Consensus 10 GetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~~p~ 58 (76)
=+-|+++.|+.+..+|..|.-+|+|. |-.||.++-|.
T Consensus 156 Pd~vii~d~~~~~~ai~Ea~~l~IP~------------I~ivDTn~~p~ 192 (225)
T TIGR01011 156 PDLLFVIDPVKEKIAVAEARKLGIPV------------VAIVDTNCDPD 192 (225)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCE------------EEEeeCCCCCc
Confidence 36799999999999999999999996 56688888665
No 53
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=30.60 E-value=78 Score=21.57 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=24.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..|+.+.|+-|.|.+=|-|.-+|+|+-
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 479999999999999999999999983
No 54
>PF04717 Phage_base_V: Phage-related baseplate assembly protein; InterPro: IPR006531 This domain occurs in a family of phage (and bacteriocin) proteins related to the phage P2 V gene product, which forms the small spike at the tip of the tail []. Homologs in general are annotated as baseplate assembly protein V. At least one member is encoded within a region of Pectobacterium carotovorum (Erwinia carotovora) described as a bacteriocin, a phage tail-derived module able to kill bacteria closely related to the host strain. It is also found in Vgr-related proteins. Genes encoding type VI secretion systems (T6SS) are widely distributed in pathogenic Gram-negative bacterial species. In Vibrio cholerae, T6SS have been found to secrete three related proteins extracellularly, VgrG-1, VgrG-2, and VgrG-3. VgrG-1 can covalently cross-link actin in vitro, and this activity was used to demonstrate that V. cholerae can translocate VgrG-1 into macrophages by a T6SS-dependent mechanism. VgrG-related proteins likely assemble into a trimeric complex that is analogous to that formed by the two trimeric proteins gp27 and gp5 that make up the baseplate "tail spike" of Escherichia coli bacteriophage T4. The VgrG components of the T6SS apparatus might assemble a "cell-puncturing device" analogous to phage tail spikes to deliver effector protein domains through membranes of target host cells []. Gp5 is an integral component of the virion baseplate of bacteriophage T4. T4 Gp5 consists of 3 domains connected via long linkers: the N-terminal oligosaccharide/oligonucleotide-binding (OB)-fold domain, the middle lysozyme domain, and the C-terminal triplestranded-helix. The equivalent of the Gp5 OB-fold domain in the structure of VgrG is the domain of unknown function comprising residues 380-470 and conserved in all known VgrGs. This entry represents the OB-fold domain which consists of a 5-stranded antiparallel-barrel with a Greek-key topology [].; PDB: 3AQJ_C 3QR8_A 2P5Z_X.
Probab=30.42 E-value=34 Score=20.51 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=9.5
Q ss_pred cCeEEEEcCCCC
Q 035014 10 EDTVIIVSPDSD 21 (76)
Q Consensus 10 GetIllVSpdgD 21 (76)
||.|++.|++||
T Consensus 47 GeqV~v~~~~Gd 58 (79)
T PF04717_consen 47 GEQVLVLFPGGD 58 (79)
T ss_dssp T-EEEEEEGGCT
T ss_pred CcEEEEEccCCc
Confidence 889999999775
No 55
>PRK09482 flap endonuclease-like protein; Provisional
Probab=29.54 E-value=29 Score=26.34 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=15.9
Q ss_pred ecCeEEEEcCCCCcHHHHH
Q 035014 9 SEDTVIIVSPDSDNLSILQ 27 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~ 27 (76)
.|..|+|||.|-|-+|++.
T Consensus 122 ~~~~v~I~S~DKDl~Qlv~ 140 (256)
T PRK09482 122 AGHQATIVSTDKGYCQLLS 140 (256)
T ss_pred CCCeEEEEECCCCccccCC
Confidence 3678999999999888763
No 56
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=29.51 E-value=68 Score=25.22 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=23.5
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhhCC
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLIGL 33 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~G~ 33 (76)
.||.+=+|-|+|-+=|-|.|.|+|.
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm 48 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGM 48 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCC
Confidence 5899999999999999999999986
No 57
>PF12077 DUF3556: Transmembrane protein of unknown function (DUF3556); InterPro: IPR021941 This family of transmembrane proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 576 to 592 amino acids in length.
Probab=29.36 E-value=34 Score=29.69 Aligned_cols=23 Identities=48% Similarity=0.647 Sum_probs=17.7
Q ss_pred ccccccCceeEEeecCCCCCcCC
Q 035014 39 RELSFAPGEVRFVDTSSIPTYKQ 61 (76)
Q Consensus 39 re~~f~pgEVR~vd~~~~p~~kq 61 (76)
++-.|+|||+|.|=+.+-|--||
T Consensus 510 ~rC~FePGE~rvv~~esQPih~~ 532 (574)
T PF12077_consen 510 RRCGFEPGEVRVVWLESQPIHRQ 532 (574)
T ss_pred HHcCCCCCeEEEEEEeccccccc
Confidence 45689999999988877665444
No 58
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.91 E-value=85 Score=21.81 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=24.4
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGL 33 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~ 33 (76)
..||.+.|+-|.|.+=|-|.-+|+|+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999999996
No 59
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.62 E-value=59 Score=25.37 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=32.6
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCCCCCcC
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSSIPTYK 60 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~~p~~k 60 (76)
+|||++|.-|.|-+-|-|.-.|.=+..-+..++..+-.+ .|+|..|+-|
T Consensus 27 ~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~---fd~s~~~~~k 75 (242)
T COG4161 27 EGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNH---FDFSKTPSDK 75 (242)
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccc---cccccCccHH
Confidence 799999999999988888777665555554444433322 4555555543
No 60
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=28.58 E-value=92 Score=21.26 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=25.0
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-+|+|+-
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999999999983
No 61
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.58 E-value=85 Score=19.30 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=19.3
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhh
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLI 31 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~ 31 (76)
.++.+|++|..|.+..++.++-.
T Consensus 47 ~~d~vi~iS~sG~t~~~~~~~~~ 69 (128)
T cd05014 47 PGDVVIAISNSGETDELLNLLPH 69 (128)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Confidence 47889999999999999887644
No 62
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=28.57 E-value=1.8e+02 Score=22.59 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=33.1
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEE--eecCCCCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRF--VDTSSIPT 58 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~--vd~~~~p~ 58 (76)
..||.+.|+-|.|-+=|-|.-+|+|+.-- .-|+|+. .+++..|.
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-------~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFEQP-------TAGQIMLDGVDLSHVPP 88 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC-------CceEEEECCEECCCCCH
Confidence 36999999999999999999999999632 2366655 34444443
No 63
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=28.16 E-value=96 Score=20.93 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=24.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|.+=|-|.-.|+|+-
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999999999974
No 64
>CHL00067 rps2 ribosomal protein S2
Probab=28.16 E-value=1.5e+02 Score=21.86 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=30.9
Q ss_pred CeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCCCCC
Q 035014 11 DTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSSIPT 58 (76)
Q Consensus 11 etIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~~p~ 58 (76)
+-|+++.|+.|-.+|..|.-+|+|. |-.||.++-|.
T Consensus 163 ~~iiv~d~~~~~~ai~Ea~~l~IPv------------IaivDTn~~p~ 198 (230)
T CHL00067 163 DIVIIIDQQEEYTALRECRKLGIPT------------ISILDTNCDPD 198 (230)
T ss_pred CEEEEeCCcccHHHHHHHHHcCCCE------------EEEEeCCCCcc
Confidence 5799999999999999999999996 56688887665
No 65
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=27.96 E-value=1.1e+02 Score=20.31 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=29.6
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEE
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRF 50 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~ 50 (76)
..||.+.|+-+.|-+=|-|.-+|+|+.- ..-|+|+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-------~~~G~v~~ 59 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYK-------PDSGEILV 59 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCeEEEE
Confidence 4799999999999999999999999852 23466664
No 66
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=27.76 E-value=95 Score=24.73 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=24.1
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCC
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
.||+||-|+--|||.==+ +.=.|++|..||+|-
T Consensus 35 ~~d~vl~ItSaG~N~L~y--------------L~~~P~~I~aVDlNp 67 (380)
T PF11899_consen 35 PDDRVLTITSAGCNALDY--------------LLAGPKRIHAVDLNP 67 (380)
T ss_pred CCCeEEEEccCCchHHHH--------------HhcCCceEEEEeCCH
Confidence 578888888888884222 223589999999984
No 67
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=27.62 E-value=1e+02 Score=20.77 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=25.0
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-+|+|+.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999999984
No 68
>PF06713 bPH_4: Bacterial PH domain; InterPro: IPR009589 This entry is represented by Bacteriophage SP-beta, YolF. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown.
Probab=27.53 E-value=1.1e+02 Score=18.63 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=18.0
Q ss_pred cccceeeecCeEEEEcCCCCcHHHHHH
Q 035014 2 SILETQYSEDTVIIVSPDSDNLSILQA 28 (76)
Q Consensus 2 S~LEtqYsGetIllVSpdgD~LsiL~a 28 (76)
.+||=.|.+...++||| -|.-..+++
T Consensus 44 ~rl~I~y~~~~~i~IsP-~~~~~FI~~ 69 (74)
T PF06713_consen 44 DRLEIYYGKYKSILISP-KDKEEFIAE 69 (74)
T ss_pred cEEEEEECCCCEEEEEC-CCHHHHHHH
Confidence 56788888666699999 555544443
No 69
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=26.78 E-value=1.6e+02 Score=22.25 Aligned_cols=37 Identities=27% Similarity=0.602 Sum_probs=31.5
Q ss_pred cCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEeecCCCCC
Q 035014 10 EDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFVDTSSIPT 58 (76)
Q Consensus 10 GetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~vd~~~~p~ 58 (76)
=+-|+++.|+.|.-+|..|.-+|+|. |-.||.++-|.
T Consensus 158 Pd~iii~d~~~~~~ai~Ea~kl~IPi------------IaivDTn~dp~ 194 (258)
T PRK05299 158 PDALFVVDPNKEHIAVKEARKLGIPV------------VAIVDTNCDPD 194 (258)
T ss_pred CCEEEEeCCCccHHHHHHHHHhCCCE------------EEEeeCCCCCc
Confidence 36799999999999999999999996 56688887665
No 70
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=26.77 E-value=74 Score=19.69 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=19.4
Q ss_pred CeEEEEcC--CCCcHHHHHHHhhCCcccccc
Q 035014 11 DTVIIVSP--DSDNLSILQAGLIGLDLRRHR 39 (76)
Q Consensus 11 etIllVSp--dgD~LsiL~a~l~G~dLrrHr 39 (76)
-+|++... ++-+.+++.|+..|+|.=-..
T Consensus 182 ~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~ 212 (229)
T cd01635 182 ADVFVLPSLREGFGLVVLEAMACGLPVIATD 212 (229)
T ss_pred CCEEEecccccCcChHHHHHHhCCCCEEEcC
Confidence 45554433 233899999999999975433
No 71
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=26.67 E-value=1e+02 Score=21.10 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=24.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
+.||.+.|+-+.|-+=|-|.-+|+|+-
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999999973
No 72
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=26.24 E-value=1.1e+02 Score=20.93 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=24.8
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-+.|.+=|-|.-.|+|.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999999973
No 73
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.20 E-value=1.2e+02 Score=19.55 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.6
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..|+.+.|+.+.|.+=|-|.-++.|.-
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999974
No 74
>PF08616 SPA: Stabilization of polarity axis
Probab=26.20 E-value=36 Score=22.54 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=35.1
Q ss_pred cceeeecCeEEEEcCCCCcHHHHHHHhhCCcccccc-cccccCceeEE-eecCCCCCcCCCCceeeecCCC
Q 035014 4 LETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHR-ELSFAPGEVRF-VDTSSIPTYKQPASAVYKCLNP 72 (76)
Q Consensus 4 LEtqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHr-e~~f~pgEVR~-vd~~~~p~~kq~~s~~~~c~~p 72 (76)
+|.--.++.||++|+....=.+.++.++=..|-.|+ .+..-.++.|+ +|++.+-.-++.++...=.+||
T Consensus 19 ~~alL~~krivv~s~~~~~~~~s~~Vlal~~Li~p~~~~~~~~~~~~PY~~i~~~~~l~~~~~~I~GvtNP 89 (113)
T PF08616_consen 19 WEALLLGKRIVVYSPSPSAGEVSEFVLALCSLISPGQDLRYFSNRYFPYFTISDLDELKSCPGYIAGVTNP 89 (113)
T ss_pred HHHHHhCCCEEEECCCCCHHHHHHHHHHHHHHHCcccchhcccccccceeechhhhhhccCCCEEEEeCCH
Confidence 466667999999998555411222222222233331 12222333355 7777765555555544444444
No 75
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=26.11 E-value=1.2e+02 Score=20.27 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=24.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-.|+|+.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999999974
No 76
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=25.34 E-value=43 Score=22.80 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.8
Q ss_pred eeeecCeEEEEcCCCC
Q 035014 6 TQYSEDTVIIVSPDSD 21 (76)
Q Consensus 6 tqYsGetIllVSpdgD 21 (76)
-|.+.|-+++|+||.+
T Consensus 34 v~~TkDg~lvv~HD~~ 49 (229)
T cd08562 34 VKLSGDGTLVLIHDDT 49 (229)
T ss_pred EeECCCCCEEEEcCCC
Confidence 4788999999999876
No 77
>PRK14976 5'-3' exonuclease; Provisional
Probab=25.25 E-value=37 Score=25.63 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=16.1
Q ss_pred ecCeEEEEcCCCCcHHHHH
Q 035014 9 SEDTVIIVSPDSDNLSILQ 27 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~ 27 (76)
.|..|+|||.|.|-++++.
T Consensus 128 ~g~~v~IvS~DkDl~ql~~ 146 (281)
T PRK14976 128 QNITVLIYSSDKDLLQLVN 146 (281)
T ss_pred CCCeEEEEeCCCCcCccCC
Confidence 3678999999999999763
No 78
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.15 E-value=1.2e+02 Score=20.02 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=24.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..|+.+.|+-|.|.+=|-|.-.|+|+-
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999999999973
No 79
>PTZ00143 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional
Probab=25.06 E-value=51 Score=23.34 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=23.1
Q ss_pred HhhCCcccccccccccCceeEEeecCC
Q 035014 29 GLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 29 ~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
.=+|.||+--.+..+.|||...|.+-.
T Consensus 25 ~dAG~DL~a~~~~~i~Pg~~~~V~tGi 51 (155)
T PTZ00143 25 GDSGLDLFIVKDQTIKPGETAFIKLGI 51 (155)
T ss_pred CccccCEecCCCeEECCCCEEEEECCe
Confidence 347999998888999999999988775
No 80
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.05 E-value=1.2e+02 Score=20.43 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=24.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-+.|-+=|-|.-+|+|+-
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999999974
No 81
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=25.03 E-value=96 Score=22.89 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=32.4
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEE--eecCCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRF--VDTSSI 56 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~--vd~~~~ 56 (76)
..||.+.||-+.|.+=|-|.-+|+|+-- .-|+|.. +|++.+
T Consensus 28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--------~~G~I~i~g~~i~~~ 70 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLN--------TEGDIQIDGVSWNSV 70 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcC--------CCcEEEECCEEhhhC
Confidence 4799999999999999999999999951 1388876 455433
No 82
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=24.84 E-value=1.2e+02 Score=20.74 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=24.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-+.|-+=|-|.-+|+|+-
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999999984
No 83
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.76 E-value=1.1e+02 Score=21.40 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=24.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-+.|-+=|-|.-+|+|+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 479999999999999999999999973
No 84
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=24.70 E-value=44 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.6
Q ss_pred eeeecCeEEEEcCCCC
Q 035014 6 TQYSEDTVIIVSPDSD 21 (76)
Q Consensus 6 tqYsGetIllVSpdgD 21 (76)
=|.+.|-+++|+||.+
T Consensus 43 V~lT~Dg~lVV~HD~~ 58 (249)
T PRK09454 43 AKLSADGEIFLLHDDT 58 (249)
T ss_pred eeECCCCCEEEECCCc
Confidence 3788999999999765
No 85
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.69 E-value=1.2e+02 Score=20.78 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=24.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-+|+|+-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999999983
No 86
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=24.64 E-value=1.2e+02 Score=20.02 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=24.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-++|-+=|-|.-+|+|+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 369999999999999999999999984
No 87
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.54 E-value=1.3e+02 Score=19.93 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=25.0
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-+.|-+=|-|.-.|+|..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999999974
No 88
>PF11181 YflT: Heat induced stress protein YflT
Probab=24.54 E-value=60 Score=20.62 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.1
Q ss_pred eeeecCeEEEEcCCCCcHHHHHHH
Q 035014 6 TQYSEDTVIIVSPDSDNLSILQAG 29 (76)
Q Consensus 6 tqYsGetIllVSpdgD~LsiL~a~ 29 (76)
+-|..+.|-||++|.|.+.-|.-.
T Consensus 22 ~Gy~~ddI~Vva~d~~~~~~l~~~ 45 (103)
T PF11181_consen 22 QGYSEDDIYVVAKDKDRTERLADQ 45 (103)
T ss_pred cCCCcccEEEEEcCchHHHHHHHh
Confidence 569999999999999988777543
No 89
>smart00475 53EXOc 5'-3' exonuclease.
Probab=24.52 E-value=45 Score=24.90 Aligned_cols=18 Identities=39% Similarity=0.386 Sum_probs=15.9
Q ss_pred cCeEEEEcCCCCcHHHHH
Q 035014 10 EDTVIIVSPDSDNLSILQ 27 (76)
Q Consensus 10 GetIllVSpdgD~LsiL~ 27 (76)
|..++|||.|.|-+++..
T Consensus 123 g~~~~IvS~DkDl~ql~~ 140 (259)
T smart00475 123 GYEVRIVSGDKDLLQLVS 140 (259)
T ss_pred CCeEEEEeCCCcHhhcCC
Confidence 788999999999998864
No 90
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=24.29 E-value=1.2e+02 Score=20.94 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.8
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-+|+|+-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 469999999999999999999999984
No 91
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=24.17 E-value=76 Score=21.52 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=21.6
Q ss_pred eecCeEEEE-c--CCCCcHHHHHHHhhCCcccc
Q 035014 8 YSEDTVIIV-S--PDSDNLSILQAGLIGLDLRR 37 (76)
Q Consensus 8 YsGetIllV-S--pdgD~LsiL~a~l~G~dLrr 37 (76)
|...+++++ | +++-+++++.|+..|+|.=-
T Consensus 241 ~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~ 273 (335)
T cd03802 241 LGNARALLFPILWEEPFGLVMIEAMACGTPVIA 273 (335)
T ss_pred HHhCcEEEeCCcccCCcchHHHHHHhcCCCEEE
Confidence 455555555 3 35668999999999998753
No 92
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=23.76 E-value=1.2e+02 Score=21.23 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=24.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-+.|-+=|-|.-+|+|.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999999984
No 93
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.63 E-value=1.3e+02 Score=20.84 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=25.0
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..|+.+.|+-+.|.+=|-|.-.|+|.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999999999985
No 94
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=23.53 E-value=1.3e+02 Score=20.99 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=29.5
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEE
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRF 50 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~ 50 (76)
..|+.+.|+-++|.+=|-|.-+|+|.- ....|+|+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~-------~~~~G~i~i 59 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE-------QPDSGRIRL 59 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC-------CCCceEEEE
Confidence 579999999999999999999999973 124577664
No 95
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=23.48 E-value=2.2e+02 Score=18.80 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=33.0
Q ss_pred ccceeeecCeEEEEcCCCCcHHHHHHHhhCCccccccc---ccccCceeEEeecCCCCC
Q 035014 3 ILETQYSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRE---LSFAPGEVRFVDTSSIPT 58 (76)
Q Consensus 3 ~LEtqYsGetIllVSpdgD~LsiL~a~l~G~dLrrHre---~~f~pgEVR~vd~~~~p~ 58 (76)
.||..+..+.|.++-....++.++-..+.|-|.==-=| ..-+||+|+.++...++.
T Consensus 22 ~L~~~~~~~~v~~~d~g~~~~~l~~~~~~~~d~viiVDA~~~g~~PG~v~~~~~~~~~~ 80 (144)
T cd06068 22 RLRPRQLPPGVRVADFGIRGIHLAYELLDGYDTLILVDAVPRGGEPGTLYVIELEDVDA 80 (144)
T ss_pred HHhccCCCCCeEEEECCCCHHHHHHHHHhcCCEEEEEEeccCCcCCCEEEEEechhccc
Confidence 46666666667666663445555544455533211112 346899999998876655
No 96
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=23.23 E-value=1.3e+02 Score=20.63 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=24.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..|+.+.|+-|.|-+=|-|.-+|+|+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999999974
No 97
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=23.17 E-value=41 Score=29.24 Aligned_cols=18 Identities=33% Similarity=0.315 Sum_probs=13.1
Q ss_pred CeEEEEcCCCCcHHHHHH
Q 035014 11 DTVIIVSPDSDNLSILQA 28 (76)
Q Consensus 11 etIllVSpdgD~LsiL~a 28 (76)
-|+|+||||+.=|-=.-+
T Consensus 246 ~T~liVSHDr~FLn~V~t 263 (582)
T KOG0062|consen 246 ITSLIVSHDRNFLNTVCT 263 (582)
T ss_pred ceEEEEeccHHHHHHHHH
Confidence 699999999865543333
No 98
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=23.05 E-value=1.4e+02 Score=20.25 Aligned_cols=27 Identities=33% Similarity=0.267 Sum_probs=24.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..|+.+.|+-|.|-+=|-|.-+|+|+-
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999999983
No 99
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=22.90 E-value=1.4e+02 Score=19.39 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=24.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-+.|-+=|-|.-+|+|.-
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 579999999999999999999999984
No 100
>TIGR00576 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (dut). Changed role from 132 to 123. RTD
Probab=22.84 E-value=58 Score=22.03 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=25.2
Q ss_pred HHHhhCCcccccccccccCceeEEeecCC
Q 035014 27 QAGLIGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 27 ~a~l~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
+..=+|.||+-..+.-+.|++...|.+..
T Consensus 17 ~~~~aGyDl~~~~d~~i~P~~~~lv~tg~ 45 (141)
T TIGR00576 17 TEGAAGYDLYAAEDVTIPPGERALVPTGI 45 (141)
T ss_pred CCCccCeeEecCCCeEECCCCEEEEEeCc
Confidence 34568999999999999999999998876
No 101
>PF12790 T6SS-SciN: Type VI secretion lipoprotein; InterPro: IPR017734 This entry represents a family of lipoproteins associated with IAHP-related loci, thought to be type VI secretion system protein []. ; PDB: 3RX9_A.
Probab=22.78 E-value=17 Score=24.21 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=21.6
Q ss_pred HHHhhCCcccccccccccCceeEEeecCCCCC
Q 035014 27 QAGLIGLDLRRHRELSFAPGEVRFVDTSSIPT 58 (76)
Q Consensus 27 ~a~l~G~dLrrHre~~f~pgEVR~vd~~~~p~ 58 (76)
....+|-++=..+++.+.|||-+.+.+..-+.
T Consensus 69 ~~~~Lg~~ll~~~e~~l~Pg~~~~~~~~~~~~ 100 (142)
T PF12790_consen 69 DKEVLGDDLLSVDEFVLQPGESRTLTLDRDPD 100 (142)
T ss_dssp --HHHHHHEEEEEEEEE-TT-EEEEEEE--TT
T ss_pred hhhhhhhhhhcceEEEECCCCcEeeeEccCCC
Confidence 45667788889999999999999987665544
No 102
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.46 E-value=1.2e+02 Score=21.07 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=24.0
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGL 33 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~ 33 (76)
-.||.+.|+-|.|-+=|-|.-+|+|+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 36999999999999999999999995
No 103
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=22.25 E-value=1.4e+02 Score=20.83 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=25.0
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-+.|-+=|-|.-+|+|+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999999999984
No 104
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.21 E-value=1.4e+02 Score=23.43 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=38.4
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEE--eecCCCCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRF--VDTSSIPT 58 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~--vd~~~~p~ 58 (76)
-.||+-.|.-|.|.+=|-|..+++|-| .+...-|+|.+ .|+...+.
T Consensus 28 ~~GEvhaiMGPNGsGKSTLa~~i~G~p-----~Y~Vt~G~I~~~GedI~~l~~ 75 (251)
T COG0396 28 KEGEVHAIMGPNGSGKSTLAYTIMGHP-----KYEVTEGEILFDGEDILELSP 75 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC-----CceEecceEEECCcccccCCH
Confidence 369999999999999999999999954 56777788888 77777554
No 105
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.21 E-value=1.4e+02 Score=20.35 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=24.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..|+.+.|+-|.|-+=|-|.-+|+|+-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 469999999999999999999999973
No 106
>PF00692 dUTPase: dUTPase; InterPro: IPR008180 Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase The essential enzyme dUTP pyrophosphatase (3.6.1.23 from EC) is specific for dUTP and is critical for the fidelity of DNA replication and repair. dUTPase hydrolyzes dUTP to dUMP and pyrophosphate, simultaneously reducing dUTP levels and providing the dUMP for dTTP biosynthesis. dUTPase decreases the intracellular concentration of dUPT so that uracil cannot be incorporated into DNA []. The crystal structure of human dUTPase reveals that each subunit of the dUTPase trimer folds into an eight-stranded jelly-roll beta barrel, with the C-terminal beta strands interchanged among the subunits. The structure is similar to that of the Escherichia coli enzyme, despite low sequence homology between the two enzymes []. Other enzymes like deoxycytidine triphosphate deaminase (dCTP) (3.5.4.13 from EC) that specifically bind uridine also belong to this group suggesting that the signature may recognise a putative uridine-binding motif. Some retroviruses encode dUTPases. Retroviral dUTPase is synthesised as part of POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, dUTPase and RNase H. ; GO: 0016787 hydrolase activity, 0046080 dUTP metabolic process; PDB: 4DHK_A 1DUC_A 1DUN_A 3LQW_A 2BT1_A 2WE1_A 2WE0_A 2WE2_A 2BSY_A 2WE3_A ....
Probab=22.13 E-value=44 Score=21.51 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.9
Q ss_pred hCCcccccccccccCceeEEeecCC
Q 035014 31 IGLDLRRHRELSFAPGEVRFVDTSS 55 (76)
Q Consensus 31 ~G~dLrrHre~~f~pgEVR~vd~~~ 55 (76)
+|.||+-..++.+.|++...|.+.-
T Consensus 14 ag~Dl~~~~~~~i~p~~~~~v~t~~ 38 (129)
T PF00692_consen 14 AGYDLYAPEDFVIPPGETVLVPTGE 38 (129)
T ss_dssp SSEEEE-SSSEEEETTEEEEEEEEE
T ss_pred eeEEEEcCCCEEECCCCEEEEEeCe
Confidence 6899999999999999998887654
No 107
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=22.04 E-value=1.4e+02 Score=20.17 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=24.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..|+.+.|+-|.|-+=|-|.-+|+|+-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999999984
No 108
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=22.04 E-value=40 Score=27.30 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=12.9
Q ss_pred eeecCeEEEEcCCCCc
Q 035014 7 QYSEDTVIIVSPDSDN 22 (76)
Q Consensus 7 qYsGetIllVSpdgD~ 22 (76)
+-.|.|||+|+||=|-
T Consensus 183 ~~l~kTivfVTHDidE 198 (309)
T COG1125 183 KELGKTIVFVTHDIDE 198 (309)
T ss_pred HHhCCEEEEEecCHHH
Confidence 4579999999998553
No 109
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=22.03 E-value=1.2e+02 Score=20.24 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.2
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhh
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLI 31 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~ 31 (76)
-.||.+|++|.-|.+..++.++-.
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~~~ 123 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKALEA 123 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHH
Confidence 358899999999999999888754
No 110
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=22.00 E-value=1.4e+02 Score=20.58 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=24.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-+|+|+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999999974
No 111
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.88 E-value=57 Score=22.66 Aligned_cols=17 Identities=12% Similarity=0.345 Sum_probs=14.1
Q ss_pred ceeeecCeEEEEcCCCC
Q 035014 5 ETQYSEDTVIIVSPDSD 21 (76)
Q Consensus 5 EtqYsGetIllVSpdgD 21 (76)
.-+.+.|-+++|+||.+
T Consensus 33 Dv~lTkDg~~Vv~HD~~ 49 (233)
T cd08582 33 DVRLTKDGELVCVHDPT 49 (233)
T ss_pred EEEEccCCCEEEecCCc
Confidence 34788999999999766
No 112
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=21.60 E-value=1.9e+02 Score=20.54 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=31.1
Q ss_pred cCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEEe---ecC
Q 035014 10 EDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRFV---DTS 54 (76)
Q Consensus 10 GetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~v---d~~ 54 (76)
..+|-|+.+++.+.+.+.++|.+.-++..+ ..+.++.| |+-
T Consensus 105 ~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~----~~a~l~vVl~~Dyl 148 (193)
T TIGR03882 105 QLTVTVLSFGEGGAAALAAALAAAGIRIAP----SEADLTVVLTDDYL 148 (193)
T ss_pred cCcEEEEecCCCcHHHHHHHHHHcCCCccC----CCCCEEEEEeCCCC
Confidence 358888999778888677778888887776 56778887 654
No 113
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=21.54 E-value=1.6e+02 Score=19.55 Aligned_cols=26 Identities=31% Similarity=0.389 Sum_probs=24.3
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
.||.+.|+-|.|-+=|-|.-+|+|..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999999984
No 114
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=21.52 E-value=1e+02 Score=20.01 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=20.1
Q ss_pred eeecCeEEEEcC--CCCcHHHHHHHhhCCccc
Q 035014 7 QYSEDTVIIVSP--DSDNLSILQAGLIGLDLR 36 (76)
Q Consensus 7 qYsGetIllVSp--dgD~LsiL~a~l~G~dLr 36 (76)
-|...++++... +|=+++++.|+..|+|.=
T Consensus 249 ~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi 280 (348)
T cd03820 249 YYAKASIFVLTSRFEGFPMVLLEAMAFGLPVI 280 (348)
T ss_pred HHHhCCEEEeCccccccCHHHHHHHHcCCCEE
Confidence 344455544332 244899999999999974
No 115
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=21.49 E-value=1.5e+02 Score=19.62 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=24.5
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-+|+|+-
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 379999999999999999999999973
No 116
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=21.47 E-value=1.5e+02 Score=19.86 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=24.6
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-.|+|.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999999973
No 117
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=21.40 E-value=1.5e+02 Score=20.12 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=29.6
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEE
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRF 50 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~ 50 (76)
..||.+.|+-++|-+=|-|.-.|+|..- +....|+|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~p~~G~i~~ 61 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHPK-----YEVTEGEILF 61 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCccEEEE
Confidence 5799999999999999999999999830 1224466664
No 118
>PRK10908 cell division protein FtsE; Provisional
Probab=21.39 E-value=1.5e+02 Score=20.15 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=24.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-+|+|+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999999984
No 119
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=21.36 E-value=1.5e+02 Score=20.51 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=24.6
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..|+.+.|+-|.|-+=|-|.-+|+|+-
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999999999973
No 120
>TIGR01644 phage_P2_V phage baseplate assembly protein V. This model describes a family of phage (and bacteriocin) proteins related to the phage P2 V gene product, which forms the small spike at the tip of the tail. Homologs in general are annotated as baseplate assembly protein V. At least one member is encoded within a region of Pectobacterium carotovorum (Erwinia carotovora) described as a bacteriocin, a phage tail-derived module able to kill bacteria closely related to the host strain.
Probab=21.35 E-value=69 Score=22.24 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=25.5
Q ss_pred cCeEEEEcCCCCcHHHHHHH-hhCCcccccccccccCceeEEe
Q 035014 10 EDTVIIVSPDSDNLSILQAG-LIGLDLRRHRELSFAPGEVRFV 51 (76)
Q Consensus 10 GetIllVSpdgD~LsiL~a~-l~G~dLrrHre~~f~pgEVR~v 51 (76)
||-|+++|+.|| ++ ++. +.|+.=.+++.....|+|.+..
T Consensus 55 Geqv~vl~~~G~-l~--~gvvl~gl~s~~~~~p~~~~~~~~~~ 94 (191)
T TIGR01644 55 GEQVVVLSPGGQ-RA--HGVVLPGVYSDAFRPPGLSAGDTVTY 94 (191)
T ss_pred CCEEEEEcCCCC-cc--ccEEEeeecCCCCCCCCCCCCeEEEE
Confidence 899999999555 33 222 3336666666677777776653
No 121
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.27 E-value=1.5e+02 Score=20.51 Aligned_cols=26 Identities=8% Similarity=0.158 Sum_probs=24.2
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
.|+.+.|+-|.|.+=|-|.-.|+|+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999999974
No 122
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.26 E-value=1.5e+02 Score=19.94 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=24.8
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-+|+|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999999974
No 123
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=21.00 E-value=1.6e+02 Score=19.87 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-.|+|+-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999999973
No 124
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=20.87 E-value=98 Score=22.74 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.0
Q ss_pred EEEcCCCCcHHHHHHHhhCCcc
Q 035014 14 IIVSPDSDNLSILQAGLIGLDL 35 (76)
Q Consensus 14 llVSpdgD~LsiL~a~l~G~dL 35 (76)
++|+| |..-+++.|+..|+|+
T Consensus 294 ~~I~h-gG~~t~~Eal~~G~P~ 314 (392)
T TIGR01426 294 AFITH-GGMNSTMEALFNGVPM 314 (392)
T ss_pred EEEEC-CCchHHHHHHHhCCCE
Confidence 67788 6666889999999886
No 125
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=20.82 E-value=62 Score=21.32 Aligned_cols=13 Identities=38% Similarity=0.440 Sum_probs=8.8
Q ss_pred eeecCeEEEEcCC
Q 035014 7 QYSEDTVIIVSPD 19 (76)
Q Consensus 7 qYsGetIllVSpd 19 (76)
|.+.|-+++|+||
T Consensus 32 ~lTkDg~~Vv~HD 44 (256)
T PF03009_consen 32 QLTKDGVPVVFHD 44 (256)
T ss_dssp EE-TTS-EEE-SS
T ss_pred cccCCceeEeccC
Confidence 6788999999997
No 126
>PF01159 Ribosomal_L6e: Ribosomal protein L6e ; InterPro: IPR000915 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes mammalian ribosomal protein L6 (L6 was previously known as TAX-responsive enhancer element binding protein 107); Caenorhabditis elegans ribosomal protein L6 (R151.3); Saccharomyces cerevisiae (Baker's yeast) ribosomal protein YL16A/YL16B; and Mesembryanthemum crystallinum (Common ice plant) ribosomal protein YL16-like. These proteins have 175 (yeast) to 287 (mammalian) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_E 4A1D_E 4A19_E 4A1B_E 3IZR_G 3O58_F 3O5H_F 3IZS_G.
Probab=20.78 E-value=33 Score=23.37 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=15.5
Q ss_pred hhCCccccccc-ccccCceeEEeecCC
Q 035014 30 LIGLDLRRHRE-LSFAPGEVRFVDTSS 55 (76)
Q Consensus 30 l~G~dLrrHre-~~f~pgEVR~vd~~~ 55 (76)
+.|.||||.+. +-.+.-- -||++.
T Consensus 1 iNGVPLRRVnQ~yVIATST--kvDis~ 25 (108)
T PF01159_consen 1 INGVPLRRVNQAYVIATST--KVDISG 25 (108)
T ss_dssp SSS--SEEESSCCCEECSC--ESCHCC
T ss_pred CCCCcceecccceEEEEee--EEeccc
Confidence 47999999985 6555543 588876
No 127
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=20.74 E-value=1.6e+02 Score=20.34 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=24.9
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-.|+|+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999999974
No 128
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.57 E-value=1.6e+02 Score=19.99 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=24.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|...|+|.-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999999973
No 129
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=20.55 E-value=1.3e+02 Score=21.66 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.5
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhh
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLI 31 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~ 31 (76)
.||.++++|..|.+..++.++=.
T Consensus 109 ~gDvli~iS~SG~s~~v~~a~~~ 131 (196)
T PRK10886 109 AGDVLLAISTRGNSRDIVKAVEA 131 (196)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999999887643
No 130
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=20.49 E-value=1.6e+02 Score=19.80 Aligned_cols=27 Identities=37% Similarity=0.357 Sum_probs=24.8
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..|+.+.|+-|.|-+=|-|.-+|+|+-
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999999983
No 131
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.39 E-value=1.6e+02 Score=19.95 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=24.7
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..|+.+.|+-|.|-+=|-|.-+|+|+-
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 369999999999999999999999984
No 132
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.34 E-value=1.4e+02 Score=18.86 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=18.7
Q ss_pred ecCeEEEEcCCCCcHHHHHHHhh
Q 035014 9 SEDTVIIVSPDSDNLSILQAGLI 31 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l~ 31 (76)
.++.+|++|..|.+-.++.++-.
T Consensus 47 ~~dl~I~iS~SG~t~~~~~~~~~ 69 (120)
T cd05710 47 EKSVVILASHSGNTKETVAAAKF 69 (120)
T ss_pred CCcEEEEEeCCCCChHHHHHHHH
Confidence 46888999999999988887643
No 133
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=20.26 E-value=1.6e+02 Score=20.26 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=24.4
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCC
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGL 33 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~ 33 (76)
..||.+.|+-+.|-+=|-|.-+|+|.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999999997
No 134
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=20.25 E-value=1.6e+02 Score=20.68 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=24.8
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-+.|-+=|-|.-.|+|+-
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999999973
No 135
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.23 E-value=1.6e+02 Score=20.48 Aligned_cols=36 Identities=19% Similarity=0.074 Sum_probs=29.3
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCcccccccccccCceeEE
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLDLRRHRELSFAPGEVRF 50 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~dLrrHre~~f~pgEVR~ 50 (76)
..|+.+.|+-|.|-+=|-|.-.|+|+-- ..-|+|+.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-------p~~G~i~~ 62 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLID-------PTEGSILI 62 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCcEEEE
Confidence 4799999999999999999999999731 23477765
No 136
>PF11883 DUF3403: Domain of unknown function (DUF3403); InterPro: IPR021820 This functionally uncharacterised domain of around 50 amino acids is found in the C terminus of eukaryotic S-locus receptor kinase proteins. ; GO: 0004674 protein serine/threonine kinase activity
Probab=20.18 E-value=63 Score=18.98 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=11.3
Q ss_pred ecCCCCCcCCCCceee
Q 035014 52 DTSSIPTYKQPASAVY 67 (76)
Q Consensus 52 d~~~~p~~kq~~s~~~ 67 (76)
|.+.+|.+|||+-..=
T Consensus 2 e~~~LP~PKqPgF~~~ 17 (48)
T PF11883_consen 2 ETATLPQPKQPGFFTG 17 (48)
T ss_pred CcccCCCCCCCCEEeE
Confidence 3466899999975443
No 137
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=20.17 E-value=1.7e+02 Score=20.03 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=24.8
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-+|+|+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999999983
No 138
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=20.14 E-value=1e+02 Score=21.56 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=20.0
Q ss_pred eeecCeEEEEcCCCCcHHHHHHHhhCCccc
Q 035014 7 QYSEDTVIIVSPDSDNLSILQAGLIGLDLR 36 (76)
Q Consensus 7 qYsGetIllVSpdgD~LsiL~a~l~G~dLr 36 (76)
-|..-++++. + +.+.+++.|+..|+|.=
T Consensus 247 ~l~~ad~~v~-~-~g~~~l~Ea~~~g~Pvv 274 (348)
T TIGR01133 247 AYAAADLVIS-R-AGASTVAELAAAGVPAI 274 (348)
T ss_pred HHHhCCEEEE-C-CChhHHHHHHHcCCCEE
Confidence 3455666554 4 33788999999999964
No 139
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=20.06 E-value=1.7e+02 Score=20.20 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=24.8
Q ss_pred eecCeEEEEcCCCCcHHHHHHHhhCCc
Q 035014 8 YSEDTVIIVSPDSDNLSILQAGLIGLD 34 (76)
Q Consensus 8 YsGetIllVSpdgD~LsiL~a~l~G~d 34 (76)
..||.+.|+-|.|-+=|-|.-.|+|+-
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999999983
No 140
>PRK13936 phosphoheptose isomerase; Provisional
Probab=20.02 E-value=1.3e+02 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=18.8
Q ss_pred ecCeEEEEcCCCCcHHHHHHHh
Q 035014 9 SEDTVIIVSPDSDNLSILQAGL 30 (76)
Q Consensus 9 sGetIllVSpdgD~LsiL~a~l 30 (76)
.||.+|++|..|.+..++.++-
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~ 132 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQ 132 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHH
Confidence 6999999999999998887654
Done!