Query 035015
Match_columns 76
No_of_seqs 102 out of 676
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:53:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_I Photosystem 1 reaction 39.6 13 0.00044 19.9 1.3 33 27-59 3-36 (38)
2 1v54_G Cytochrome C oxidase po 23.9 28 0.00096 21.3 1.1 25 30-56 12-36 (85)
3 2y69_G Cytochrome C oxidase po 19.2 40 0.0014 21.1 1.1 25 30-56 24-48 (97)
4 3r8s_4 50S ribosomal protein L 13.3 38 0.0013 18.0 -0.1 15 52-66 23-37 (38)
5 1qf8_A Casein kinase II; casei 9.9 40 0.0014 23.1 -0.9 26 44-69 78-103 (182)
6 1b75_A Protein (50S ribosomal 8.4 36 0.0012 20.4 -1.5 9 43-51 24-32 (94)
7 4dgl_A Casein kinase II subuni 8.0 54 0.0019 23.2 -0.9 26 44-69 78-103 (215)
8 3arc_X Photosystem II PSBX pro 7.8 2E+02 0.0067 15.2 1.5 16 48-63 23-38 (39)
9 2zjr_4 50S ribosomal protein L 7.3 75 0.0026 16.6 -0.4 14 52-66 23-36 (37)
10 3bbo_6 Ribosomal protein L36; 7.2 90 0.0031 19.9 -0.1 16 52-67 23-38 (104)
No 1
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=39.61 E-value=13 Score=19.88 Aligned_cols=33 Identities=12% Similarity=0.421 Sum_probs=23.7
Q ss_pred cCCChhHHHHHHHHHHHhh-hhhhhhhheeeeeC
Q 035015 27 GCCSVEFCICLLLTILGYV-PGIIYALYAIVFVD 59 (76)
Q Consensus 27 g~~~~~~~In~lLtllg~i-Pg~ihA~y~i~~~~ 59 (76)
|......+=+++--+.||+ |++.-|...++.++
T Consensus 3 g~~aa~~LPsI~VPlVglvfPai~Mallf~yIe~ 36 (38)
T 1jb0_I 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLYIEG 36 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHHHHC
T ss_pred chhhhhhCChhhHhHHHHHHHHHHHHHHHHhhcc
Confidence 3345556667778889986 99999988776444
No 2
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=23.91 E-value=28 Score=21.28 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=18.2
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhheee
Q 035015 30 SVEFCICLLLTILGYVPGIIYALYAIV 56 (76)
Q Consensus 30 ~~~~~In~lLtllg~iPg~ihA~y~i~ 56 (76)
+...|-+ +|+++-+|+++-+.+-.+
T Consensus 12 ~~~~Wkk--is~~va~P~v~l~~~n~y 36 (85)
T 1v54_G 12 GARTWRF--LTFGLALPSVALCTLNSW 36 (85)
T ss_dssp CHHHHHH--HHHHTHHHHHHHHHHHHT
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4556665 477889999988877664
No 3
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=19.15 E-value=40 Score=21.08 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhheee
Q 035015 30 SVEFCICLLLTILGYVPGIIYALYAIV 56 (76)
Q Consensus 30 ~~~~~In~lLtllg~iPg~ihA~y~i~ 56 (76)
+.+.|-++ |+++-+|+++-+.+-.+
T Consensus 24 ~~~~Wkki--S~~va~P~v~l~~~n~y 48 (97)
T 2y69_G 24 GARTWRFL--TFGLALPSVALCTLNSW 48 (97)
T ss_dssp CHHHHHHH--HHHTHHHHHHHHHHHHT
T ss_pred hhhhHHHH--HHHHHHHHHHHHHHHHH
Confidence 35667664 67889999998877654
No 4
>3r8s_4 50S ribosomal protein L36; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_4 1p86_4 1vs8_4 1vs6_4 2aw4_4 2awb_4 1vt2_4 2i2v_4 2j28_4 2i2t_4* 2qao_4* 2qba_4* 2qbc_4* 2qbe_4 2qbg_4 2qbi_4* 2qbk_4* 2qov_4 2qox_4 2qoz_4* ...
Probab=13.35 E-value=38 Score=17.95 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=9.9
Q ss_pred hheeeeeCcchhhhh
Q 035015 52 LYAIVFVDRDEYFDE 66 (76)
Q Consensus 52 ~y~i~~~~~~~~~~~ 66 (76)
+|+++..++..++++
T Consensus 23 v~Vick~nPrhKqRQ 37 (38)
T 3r8s_4 23 IRVICSAEPKHKQRQ 37 (38)
T ss_dssp EEEEETTCGGGCEEC
T ss_pred EEEEeCCCCchhhcC
Confidence 567776677766554
No 5
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=9.91 E-value=40 Score=23.11 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=17.2
Q ss_pred hhhhhhhhhheeeeeCcchhhhhcCc
Q 035015 44 YVPGIIYALYAIVFVDRDEYFDEYRR 69 (76)
Q Consensus 44 ~iPg~ihA~y~i~~~~~~~~~~~~~R 69 (76)
-+=|+|||=|++..+.=++..+.+++
T Consensus 78 ~LYGLIHaRyIlT~~Gl~~M~eKy~~ 103 (182)
T 1qf8_A 78 MLYGLIHARYILTNRGIAQMLEKYQQ 103 (182)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHT
T ss_pred HHhchhhhhhcccHHHHHHHHHhhhc
Confidence 35688999999876655554444443
No 6
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Probab=8.41 E-value=36 Score=20.40 Aligned_cols=9 Identities=44% Similarity=0.844 Sum_probs=6.2
Q ss_pred Hhhhhhhhh
Q 035015 43 GYVPGIIYA 51 (76)
Q Consensus 43 g~iPg~ihA 51 (76)
|.+||++|.
T Consensus 24 G~vPaVvYG 32 (94)
T 1b75_A 24 NKFPAIIYG 32 (94)
T ss_dssp TBCCEEEEC
T ss_pred CCceEEEEC
Confidence 567777773
No 7
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=7.97 E-value=54 Score=23.15 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=17.3
Q ss_pred hhhhhhhhhheeeeeCcchhhhhcCc
Q 035015 44 YVPGIIYALYAIVFVDRDEYFDEYRR 69 (76)
Q Consensus 44 ~iPg~ihA~y~i~~~~~~~~~~~~~R 69 (76)
-+=|+|||=|++..+.=++..+.+++
T Consensus 78 ~LYGLIHARYIlT~~Gl~~M~eKY~~ 103 (215)
T 4dgl_A 78 MLYGLIHARYILTNRGIAQMLEKYQQ 103 (215)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHT
T ss_pred HHhhhhhHhheecHHHHHHHHHHHhc
Confidence 45688999999876655554444443
No 8
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=7.78 E-value=2e+02 Score=15.21 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=8.9
Q ss_pred hhhhhheeeeeCcchh
Q 035015 48 IIYALYAIVFVDRDEY 63 (76)
Q Consensus 48 ~ihA~y~i~~~~~~~~ 63 (76)
+.-|+..+.+.++-+|
T Consensus 23 i~~ali~VSq~D~v~R 38 (39)
T 3arc_X 23 TFAVLIAISQIDKVQR 38 (39)
T ss_dssp HHHHHHHHHHHSCCCC
T ss_pred HHHHheeEeccCcccc
Confidence 4455555666665543
No 9
>2zjr_4 50S ribosomal protein L36; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.42.1.1 PDB: 1nwx_4* 1sm1_4* 1xbp_4* 2zjp_4* 2zjq_4 1nwy_4 3cf5_4* 3dll_4* 3pio_4* 3pip_4* 1nkw_4 1yl3_9 2b66_9 2b9n_9 2b9p_9 1pnu_4 1pny_4 1vor_6 1vou_6 1vow_6 ...
Probab=7.30 E-value=75 Score=16.63 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=7.4
Q ss_pred hheeeeeCcchhhhh
Q 035015 52 LYAIVFVDRDEYFDE 66 (76)
Q Consensus 52 ~y~i~~~~~~~~~~~ 66 (76)
+|+++. ++..++++
T Consensus 23 v~Vick-nPrhKqrQ 36 (37)
T 2zjr_4 23 VLVICS-NVKHKQRQ 36 (37)
T ss_dssp EEECCS-SSTTCEEC
T ss_pred EEEECC-CCcccccC
Confidence 455665 65544443
No 10
>3bbo_6 Ribosomal protein L36; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=7.16 E-value=90 Score=19.88 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=11.2
Q ss_pred hheeeeeCcchhhhhc
Q 035015 52 LYAIVFVDRDEYFDEY 67 (76)
Q Consensus 52 ~y~i~~~~~~~~~~~~ 67 (76)
+|++++.+++.+++++
T Consensus 23 vyVICK~NPRHKQRQG 38 (104)
T 3bbo_6 23 VYVICSSNPKHKQRQG 38 (104)
T ss_dssp EEBCBSSCGGGCBCCC
T ss_pred EEEEcCCCcchhhhcc
Confidence 5667777777666665
Done!