Query 035015
Match_columns 76
No_of_seqs 102 out of 676
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 13:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035015.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035015hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u3em2 d.285.1.1 (M:106-174) 17.9 11 0.00083 21.0 -0.1 12 65-76 12-23 (69)
2 d2qam41 g.42.1.1 (4:1-38) Ribo 16.1 14 0.001 18.4 -0.1 15 52-66 23-37 (38)
3 d1dfup_ b.53.1.1 (P:) Ribosoma 12.6 9 0.00066 21.7 -1.7 8 43-50 24-31 (94)
4 d1oedc_ f.36.1.1 (C:) Acetylch 11.0 1.4E+02 0.01 18.0 3.7 11 10-20 18-28 (260)
5 d1qf8a_ g.41.4.1 (A:) Casein k 10.2 18 0.0013 23.0 -0.9 29 44-72 72-100 (173)
6 d1w6ka2 a.102.4.2 (A:100-378) 7.3 26 0.0019 23.7 -1.2 18 43-60 4-21 (279)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 7.0 96 0.007 13.9 1.2 14 45-58 10-23 (27)
8 d1rfya_ a.2.13.1 (A:) Transcri 6.9 68 0.0049 18.4 0.7 13 34-46 76-88 (89)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 6.8 57 0.0041 17.9 0.4 10 52-61 37-46 (91)
10 d2e74e1 f.23.24.1 (E:1-32) Pet 6.7 1.5E+02 0.011 13.6 2.5 21 32-52 6-26 (32)
No 1
>d1u3em2 d.285.1.1 (M:106-174) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
Probab=17.88 E-value=11 Score=21.00 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=9.4
Q ss_pred hhcCcccCCCCC
Q 035015 65 DEYRRPLYAPGP 76 (76)
Q Consensus 65 ~~~~Rp~~~~~~ 76 (76)
.+++||||+.+|
T Consensus 12 i~nekpIyvis~ 23 (69)
T d1u3em2 12 IKNQKPIIVISP 23 (69)
T ss_dssp HHTCCCEEEECT
T ss_pred hhccCCEEEEcC
Confidence 467899998765
No 2
>d2qam41 g.42.1.1 (4:1-38) Ribosomal protein L36 {Escherichia coli [TaxId: 562]}
Probab=16.06 E-value=14 Score=18.44 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=10.6
Q ss_pred hheeeeeCcchhhhh
Q 035015 52 LYAIVFVDRDEYFDE 66 (76)
Q Consensus 52 ~y~i~~~~~~~~~~~ 66 (76)
+|+++..++..++++
T Consensus 23 v~ViCk~nPrHKQRQ 37 (38)
T d2qam41 23 IRVICSAEPKHKQRQ 37 (38)
T ss_dssp CCCCBSSCGGGCCCC
T ss_pred EEEEeCCCCcccccC
Confidence 577777777776654
No 3
>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}
Probab=12.57 E-value=9 Score=21.73 Aligned_cols=8 Identities=50% Similarity=0.928 Sum_probs=6.4
Q ss_pred Hhhhhhhh
Q 035015 43 GYVPGIIY 50 (76)
Q Consensus 43 g~iPg~ih 50 (76)
|++||++|
T Consensus 24 G~vPaViY 31 (94)
T d1dfup_ 24 NKFPAIIY 31 (94)
T ss_dssp TEEEEEEE
T ss_pred CCccEEEE
Confidence 67888887
No 4
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=11.00 E-value=1.4e+02 Score=17.98 Aligned_cols=11 Identities=36% Similarity=0.329 Sum_probs=6.0
Q ss_pred HHHHHHhcchh
Q 035015 10 EILLAVLLPPV 20 (76)
Q Consensus 10 ~~ilai~lPPl 20 (76)
+-++++++||=
T Consensus 18 l~~~~f~lp~~ 28 (260)
T d1oedc_ 18 LASLAFYLPAE 28 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHeeeCCC
Confidence 34455666663
No 5
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.21 E-value=18 Score=22.99 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=19.6
Q ss_pred hhhhhhhhhheeeeeCcchhhhhcCcccC
Q 035015 44 YVPGIIYALYAIVFVDRDEYFDEYRRPLY 72 (76)
Q Consensus 44 ~iPg~ihA~y~i~~~~~~~~~~~~~Rp~~ 72 (76)
-+=|+|||=|++..+.=++..+.+++..+
T Consensus 72 ~LYGLIHaRyI~T~~Gl~~m~eKy~~g~F 100 (173)
T d1qf8a_ 72 MLYGLIHARYILTNRGIAQMLEKYQQGDF 100 (173)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHTTTT
T ss_pred HHHHHhhhheeecHhHHHHHHHHHhCCCC
Confidence 35688999999976666655555555443
No 6
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.26 E-value=26 Score=23.69 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=13.4
Q ss_pred HhhhhhhhhhheeeeeCc
Q 035015 43 GYVPGIIYALYAIVFVDR 60 (76)
Q Consensus 43 g~iPg~ihA~y~i~~~~~ 60 (76)
+.+||+|-|+|+.-..-+
T Consensus 4 f~~p~~Vial~i~g~~~~ 21 (279)
T d1w6ka2 4 FLLPGLLITCHVARIPLP 21 (279)
T ss_dssp SHHHHHHHHHHHHTCCCC
T ss_pred hhhhHHHHHHhhcCCCCC
Confidence 568999999998754333
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.96 E-value=96 Score=13.91 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=8.7
Q ss_pred hhhhhhhhheeeee
Q 035015 45 VPGIIYALYAIVFV 58 (76)
Q Consensus 45 iPg~ihA~y~i~~~ 58 (76)
+-|..+|-|-.+++
T Consensus 10 l~glf~aayqqykr 23 (27)
T d2e74g1 10 LGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcC
Confidence 55677887754433
No 8
>d1rfya_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.87 E-value=68 Score=18.36 Aligned_cols=13 Identities=38% Similarity=0.996 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhh
Q 035015 34 CICLLLTILGYVP 46 (76)
Q Consensus 34 ~In~lLtllg~iP 46 (76)
.+|-++.++|++|
T Consensus 76 Av~tLi~iLG~iP 88 (89)
T d1rfya_ 76 ALNTLISILGFIP 88 (89)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHhccCC
Confidence 4677788888887
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.82 E-value=57 Score=17.88 Aligned_cols=10 Identities=0% Similarity=-0.420 Sum_probs=4.4
Q ss_pred hheeeeeCcc
Q 035015 52 LYAIVFVDRD 61 (76)
Q Consensus 52 ~y~i~~~~~~ 61 (76)
+|.+.+++++
T Consensus 37 ~~~~~ryR~~ 46 (91)
T d1fftb2 37 VGFAWKYRAS 46 (91)
T ss_dssp HTTTTTTTTS
T ss_pred Hhhheeeecc
Confidence 4444444433
No 10
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.74 E-value=1.5e+02 Score=13.62 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhh
Q 035015 32 EFCICLLLTILGYVPGIIYAL 52 (76)
Q Consensus 32 ~~~In~lLtllg~iPg~ihA~ 52 (76)
-|.|.++--++|.--|+++|+
T Consensus 6 vfyivfialffgiavgiifai 26 (32)
T d2e74e1 6 VFYIVFIALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHhhheeeE
Confidence 455666666777777888876
Done!