BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035016
MLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNVTCSSNGKSNLYILS
NPSSSQIQSLCTELCS

High Scoring Gene Products

Symbol, full name Information P value
RBL4
RHOMBOID-like protein 4
protein from Arabidopsis thaliana 1.2e-26
RBL1
RHOMBOID-like 1
protein from Arabidopsis thaliana 8.7e-24
RBL3
RHOMBOID-like protein 3
protein from Arabidopsis thaliana 3.8e-08
RBL2
AT1G63120
protein from Arabidopsis thaliana 8.6e-08
RBL6
RHOMBOID-like protein 6
protein from Arabidopsis thaliana 2.8e-06

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035016
        (76 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2084465 - symbol:RBL4 "RHOMBOID-like protein 4...   300  1.2e-26   1
TAIR|locus:2066102 - symbol:RBL1 "RHOMBOID-like 1" specie...   273  8.7e-24   1
TAIR|locus:2182925 - symbol:RBL3 "RHOMBOID-like protein 3...   132  3.8e-08   1
TAIR|locus:2015193 - symbol:RBL2 "RHOMBOID-like 2" specie...   128  8.6e-08   1
TAIR|locus:2195067 - symbol:RBL6 "RHOMBOID-like protein 6...   114  2.8e-06   1
TAIR|locus:2029376 - symbol:KOM "KOMPEITO" species:3702 "...   111  7.6e-06   1


>TAIR|locus:2084465 [details] [associations]
            symbol:RBL4 "RHOMBOID-like protein 4" species:3702
            "Arabidopsis thaliana" [GO:0004252 "serine-type endopeptidase
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR002610
            InterPro:IPR022764 Pfam:PF01694 GO:GO:0016021 GO:GO:0005886
            GO:GO:0009506 EMBL:CP002686 GO:GO:0006508 GO:GO:0004252
            PANTHER:PTHR22936 IPI:IPI00518159 RefSeq:NP_850698.1
            UniGene:At.19072 ProteinModelPortal:F4JBM4 MEROPS:S54.A06
            PRIDE:F4JBM4 EnsemblPlants:AT3G53780.2 GeneID:824545
            KEGG:ath:AT3G53780 OMA:GIRMERE Uniprot:F4JBM4
        Length = 394

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 51/74 (68%), Positives = 59/74 (79%)

Query:     2 LLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNVTCSSNGKSNLYILSN 61
             L   VD N+HCSWCHYLSCVPTS+WSC  EPA C+TTQ GNQL++TC  NGKS  YIL+N
Sbjct:   320 LFNNVDGNEHCSWCHYLSCVPTSKWSCNREPASCTTTQLGNQLSMTCLRNGKSASYILAN 379

Query:    62 PSSSQIQSLCTELC 75
             PS S+I SLC +LC
Sbjct:   380 PSDSRINSLCVQLC 393


>TAIR|locus:2066102 [details] [associations]
            symbol:RBL1 "RHOMBOID-like 1" species:3702 "Arabidopsis
            thaliana" [GO:0004252 "serine-type endopeptidase activity"
            evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IDA]
            InterPro:IPR002610 InterPro:IPR022764 Pfam:PF01694 GO:GO:0016021
            GO:GO:0005794 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006508
            GO:GO:0004252 PANTHER:PTHR22936 eggNOG:NOG282167
            HOGENOM:HOG000239666 EMBL:AK228551 IPI:IPI00548534
            RefSeq:NP_180469.3 UniGene:At.47832 ProteinModelPortal:Q0WQX7
            MEROPS:S54.A05 PaxDb:Q0WQX7 PRIDE:Q0WQX7 EnsemblPlants:AT2G29050.1
            GeneID:817453 KEGG:ath:AT2G29050 TAIR:At2g29050 InParanoid:Q0WQX7
            OMA:WINQKAC PhylomeDB:Q0WQX7 ProtClustDB:CLSN2918679
            ArrayExpress:Q0WQX7 Genevestigator:Q0WQX7 Uniprot:Q0WQX7
        Length = 389

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 43/75 (57%), Positives = 59/75 (78%)

Query:     1 MLLRGVDANDHCSWCHYLSCVPTSRWSCRTEPAFCSTTQDGNQLNVTCSSNGKSNLYILS 60
             +LLRG D N HCSWCHYLSC+PTS WSC+++  +C ++Q G Q+N+TC +NGK+ +Y LS
Sbjct:   314 VLLRGTDLNKHCSWCHYLSCIPTSLWSCKSQNVYCESSQIGQQMNLTCITNGKTEMYKLS 373

Query:    61 NPSSSQIQSLCTELC 75
             N   S+IQ LC++LC
Sbjct:   374 NDIPSRIQQLCSQLC 388


>TAIR|locus:2182925 [details] [associations]
            symbol:RBL3 "RHOMBOID-like protein 3" species:3702
            "Arabidopsis thaliana" [GO:0004252 "serine-type endopeptidase
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
            InterPro:IPR002610 InterPro:IPR022764 Pfam:PF01694 GO:GO:0016021
            GO:GO:0009506 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006508
            EMBL:AL163652 GO:GO:0004252 PANTHER:PTHR22936 UniGene:At.71052
            HOGENOM:HOG000239666 EMBL:AY058157 EMBL:AY098983 IPI:IPI00536071
            PIR:T48496 RefSeq:NP_196342.1 UniGene:At.48993
            ProteinModelPortal:Q9LYP1 IntAct:Q9LYP1 MEROPS:S54.A02 PRIDE:Q9LYP1
            EnsemblPlants:AT5G07250.1 GeneID:830616 KEGG:ath:AT5G07250
            TAIR:At5g07250 InParanoid:Q9LYP1 OMA:KLGALEW PhylomeDB:Q9LYP1
            ProtClustDB:CLSN2687058 Genevestigator:Q9LYP1 Uniprot:Q9LYP1
        Length = 346

 Score = 132 (51.5 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 20/28 (71%), Positives = 21/28 (75%)

Query:     1 MLLRGVDANDHCSWCHYLSCVPTSRWSC 28
             ML RG + NDHC WCHYL CVPTS W C
Sbjct:   316 MLFRGENGNDHCRWCHYLRCVPTSSWRC 343


>TAIR|locus:2015193 [details] [associations]
            symbol:RBL2 "RHOMBOID-like 2" species:3702 "Arabidopsis
            thaliana" [GO:0004252 "serine-type endopeptidase activity"
            evidence=IEA;IDA] [GO:0006508 "proteolysis" evidence=IEA]
            [GO:0016021 "integral to membrane" evidence=IEA] [GO:0005794 "Golgi
            apparatus" evidence=IDA] [GO:0009506 "plasmodesma" evidence=IDA]
            InterPro:IPR002610 InterPro:IPR022764 Pfam:PF01694 GO:GO:0016021
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009506 GO:GO:0005794
            GO:GO:0006508 GO:GO:0004252 PANTHER:PTHR22936 EMBL:AC010795
            HOGENOM:HOG000239666 EMBL:BT004076 EMBL:BT005121 EMBL:AB195671
            IPI:IPI00521870 PIR:F96656 RefSeq:NP_176500.1 UniGene:At.43734
            ProteinModelPortal:Q9CAN1 IntAct:Q9CAN1 MEROPS:S54.015 PaxDb:Q9CAN1
            PRIDE:Q9CAN1 EnsemblPlants:AT1G63120.1 GeneID:842616
            KEGG:ath:AT1G63120 TAIR:At1g63120 eggNOG:KOG2289 InParanoid:Q9CAN1
            OMA:ETHWTSW PhylomeDB:Q9CAN1 ProtClustDB:CLSN2914175
            ArrayExpress:Q9CAN1 Genevestigator:Q9CAN1 Uniprot:Q9CAN1
        Length = 317

 Score = 128 (50.1 bits), Expect = 8.6e-08, P = 8.6e-08
 Identities = 18/28 (64%), Positives = 22/28 (78%)

Query:     1 MLLRGVDANDHCSWCHYLSCVPTSRWSC 28
             ML +G + N HC WCHYLSC PTS+W+C
Sbjct:   290 MLFKGENGNKHCKWCHYLSCFPTSKWTC 317


>TAIR|locus:2195067 [details] [associations]
            symbol:RBL6 "RHOMBOID-like protein 6" species:3702
            "Arabidopsis thaliana" [GO:0004252 "serine-type endopeptidase
            activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] InterPro:IPR002610 InterPro:IPR022764
            Pfam:PF01694 GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0006508 GO:GO:0004252 PANTHER:PTHR22936 eggNOG:COG0705
            HOGENOM:HOG000239666 EMBL:AY065251 EMBL:AY091318 IPI:IPI00538843
            RefSeq:NP_001077528.1 RefSeq:NP_001184975.1 RefSeq:NP_172735.1
            UniGene:At.28545 ProteinModelPortal:Q8VZ48 IntAct:Q8VZ48
            STRING:Q8VZ48 MEROPS:S54.A04 PaxDb:Q8VZ48 PRIDE:Q8VZ48
            EnsemblPlants:AT1G12750.1 EnsemblPlants:AT1G12750.2
            EnsemblPlants:AT1G12750.3 GeneID:837831 KEGG:ath:AT1G12750
            TAIR:At1g12750 InParanoid:Q8VZ48 PhylomeDB:Q8VZ48
            ProtClustDB:CLSN2682464 ArrayExpress:Q8VZ48 Genevestigator:Q8VZ48
            Uniprot:Q8VZ48
        Length = 307

 Score = 114 (45.2 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 17/28 (60%), Positives = 19/28 (67%)

Query:     1 MLLRGVDANDHCSWCHYLSCVPTSRWSC 28
             ML  G + N HC WCH L C PTS+WSC
Sbjct:   280 MLFDGENGNKHCKWCHRLDCYPTSKWSC 307


>TAIR|locus:2029376 [details] [associations]
            symbol:KOM "KOMPEITO" species:3702 "Arabidopsis thaliana"
            [GO:0004252 "serine-type endopeptidase activity" evidence=IEA]
            [GO:0006508 "proteolysis" evidence=IEA] [GO:0016021 "integral to
            membrane" evidence=IEA] InterPro:IPR002610 InterPro:IPR022764
            Pfam:PF01694 GO:GO:0016021 EMBL:CP002684 GO:GO:0006508
            GO:GO:0004252 PANTHER:PTHR22936 IPI:IPI00534674 RefSeq:NP_177909.2
            UniGene:At.52552 ProteinModelPortal:F4I8K2
            EnsemblPlants:AT1G77860.1 GeneID:844122 KEGG:ath:AT1G77860
            OMA:KQKLDRP PhylomeDB:F4I8K2 ArrayExpress:F4I8K2 Uniprot:F4I8K2
        Length = 351

 Score = 111 (44.1 bits), Expect = 7.6e-06, P = 7.6e-06
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query:     5 GVDANDHCSWCHYLSCVPTSRWSCRTEPAFC 35
             GV+ N HC WC Y+ CVPT +WSC      C
Sbjct:   314 GVNLNRHCHWCRYVDCVPTKKWSCSDMTTSC 344


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.127   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       76        76   0.00091  102 3  11 22  0.38    29
                                                     29  0.48    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  124 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.73u 0.17s 9.90t   Elapsed:  00:00:01
  Total cpu time:  9.73u 0.17s 9.90t   Elapsed:  00:00:01
  Start:  Fri May 10 04:47:29 2013   End:  Fri May 10 04:47:30 2013

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