BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035016
         (76 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
           Domain
 pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
           Domain
          Length = 3367

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 6   VDANDHCSWCHYLSCVPTSR--------WSCRTEPAFCSTTQDGNQLNVTCSSNGKSNLY 57
           VD NDH  +  ++   PT          WS + + A    T   +++     S  ++   
Sbjct: 432 VDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQM 491

Query: 58  ILSNPSSSQIQSLCTE 73
           IL+N + S +Q L  +
Sbjct: 492 ILNNLADSVLQDLSAQ 507


>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
           Motor Domain
 pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
           Motor Domain
          Length = 3245

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 6   VDANDHCSWCHYLSCVPTSR--------WSCRTEPAFCSTTQDGNQLNVTCSSNGKSNLY 57
           VD NDH  +  ++   PT          WS + + A    T   +++     S  ++   
Sbjct: 432 VDVNDHSKYSEWVDNYPTQLVLLTSQIVWSTQVDQALGGGTLQQSKIQEQLQSIEQTTQM 491

Query: 58  ILSNPSSSQIQSLCTE 73
           IL+N + S +Q L  +
Sbjct: 492 ILNNLADSVLQDLSAQ 507


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.127    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,356,252
Number of Sequences: 62578
Number of extensions: 73551
Number of successful extensions: 146
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 2
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)