BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035016
         (76 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54NU3|COLD_DICDI Colossin-D OS=Dictyostelium discoideum GN=colD PE=3 SV=1
          Length = 925

 Score = 32.0 bits (71), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 13/77 (16%)

Query: 1   MLLRGVDANDHCSWCHYLSCVPT--SRWSCRTEPAFCS---------TTQDGNQLNVTCS 49
           +L+  VD  DH ++   LS VPT  + W+  T   F +            D NQ+++ C 
Sbjct: 128 LLIGSVDGFDHVTFNSSLSGVPTNMNSWNVDTVGKFSNNLTSAGRIIVKNDNNQISLGCF 187

Query: 50  SNG-KSNL-YILSNPSS 64
             G K+NL YIL +P++
Sbjct: 188 EEGDKNNLNYILMHPNN 204


>sp|Q99345|YO085_YEAST Putative uncharacterized protein YOL085C OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=YOL085C PE=5
           SV=1
          Length = 113

 Score = 30.0 bits (66), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/16 (68%), Positives = 13/16 (81%)

Query: 5   GVDANDHCSWCHYLSC 20
           G D +DH +WCHYLSC
Sbjct: 89  GCDDDDHDNWCHYLSC 104


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.127    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,844,310
Number of Sequences: 539616
Number of extensions: 900674
Number of successful extensions: 2406
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2404
Number of HSP's gapped (non-prelim): 4
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)