BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035017
         (76 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a
 pdb|2QFZ|B Chain B, Crystal Structure Of Human Tbc1 Domain Family Member 22a
          Length = 345

 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)

Query: 1   MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL-AGDITSNLKLLQNYPP 59
           M+E      + +WDT  S+PDG     L VC   L+  R+ +L   D    L  LQN P 
Sbjct: 255 MREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPT 314

Query: 60  T-----NISHLLYVANKLR 73
                 +IS LL  A +L+
Sbjct: 315 AHWDDEDISLLLAEAYRLK 333


>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b
          Length = 346

 Score = 38.5 bits (88), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 1   MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL-AGDITSNLKLLQNYP 58
           M+E      + +WDT  S+P+G     L VC   LI  R+ +L   D    L LLQN P
Sbjct: 256 MRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNLP 314


>pdb|4GMG|A Chain A, Nadp+ Bound Structure Of A Thiazolinyl Imine Reductase
           From Yersinia Enterocolitica (Irp3)
 pdb|4GMG|B Chain B, Nadp+ Bound Structure Of A Thiazolinyl Imine Reductase
           From Yersinia Enterocolitica (Irp3)
 pdb|4GMG|C Chain C, Nadp+ Bound Structure Of A Thiazolinyl Imine Reductase
           From Yersinia Enterocolitica (Irp3)
 pdb|4GMG|D Chain D, Nadp+ Bound Structure Of A Thiazolinyl Imine Reductase
           From Yersinia Enterocolitica (Irp3)
          Length = 385

 Score = 25.8 bits (55), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 19  DPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRN 74
           DPD P          M  LI  RLL G    +L L  +Y P   S  L+VA+   N
Sbjct: 234 DPDDPD---------MHSLIMHRLLLGWPEGHLSLEASYGPVIWSSSLFVADHQEN 280


>pdb|4GMF|A Chain A, Apo Structure Of A Thiazolinyl Imine Reductase From
           Yersinia Enterocolitica (Irp3)
 pdb|4GMF|B Chain B, Apo Structure Of A Thiazolinyl Imine Reductase From
           Yersinia Enterocolitica (Irp3)
 pdb|4GMF|C Chain C, Apo Structure Of A Thiazolinyl Imine Reductase From
           Yersinia Enterocolitica (Irp3)
 pdb|4GMF|D Chain D, Apo Structure Of A Thiazolinyl Imine Reductase From
           Yersinia Enterocolitica (Irp3)
          Length = 372

 Score = 25.8 bits (55), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 9/56 (16%)

Query: 19  DPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRN 74
           DPD P          M  LI  RLL G    +L L  +Y P   S  L+VA+   N
Sbjct: 214 DPDDPD---------MHSLIMHRLLLGWPEGHLSLEASYGPVIWSSSLFVADHQEN 260


>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
           Stearothermophilus, MaltoseACARBOSE COMPLEX
 pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
           Stearothermophilus, Maltose Complex
          Length = 686

 Score = 25.8 bits (55), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 42  LLAGDITSNLKLLQNYPPTNISHLLYVANKLRNLG 76
           +L+G  TS +  +++ PPTN+   +Y+   +  LG
Sbjct: 576 ILSGTQTSVVFTVKSAPPTNLGDKIYLTGNIPELG 610


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,215,927
Number of Sequences: 62578
Number of extensions: 63845
Number of successful extensions: 181
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 6
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)