BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035017
(76 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3
Length = 400
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
QEF D + IWD+L +D D + L VCC ML+LIR +LL GD T N++LLQ+YP T+
Sbjct: 327 QEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLMLIREQLLEGDFTVNMRLLQDYPITD 385
Query: 62 ISHLLYVANKLRN 74
+ +L A +L++
Sbjct: 386 VCQILQKAKELQD 398
>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1
Length = 400
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTN 61
QEF D + IWD+L +D + + L VCC MLILIR +LL GD T N++LLQ+YP T+
Sbjct: 327 QEFLLPDVIRIWDSLFADGNR-FDFLLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITD 385
Query: 62 ISHLLYVANKLRN 74
+ +L A +L++
Sbjct: 386 VCQILQKAKELQD 398
>sp|Q8WUA7|TB22A_HUMAN TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2
Length = 517
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL-AGDITSNLKLLQNYPP 59
M+E + +WDT S+PDG L VC L+ R+ +L D L LQN P
Sbjct: 427 MREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPT 486
Query: 60 T-----NISHLLYVANKLR 73
+IS LL A +L+
Sbjct: 487 AHWDDEDISLLLAEAYRLK 505
>sp|Q8R5A6|TB22A_MOUSE TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=2 SV=3
Length = 516
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAG-DITSNLKLLQNYPP 59
M+E + +WDT S+P+G L VC L+ RR +L D L LQN P
Sbjct: 426 MRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRREILEERDFQELLLFLQNLPT 485
Query: 60 T-----NISHLLYVANKLR 73
++S LL A +L+
Sbjct: 486 ARWDDQDVSLLLAEAYRLK 504
>sp|Q9URY3|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4
SV=4
Length = 619
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Query: 2 QEFNFADNLHIWDTLLSDP-------------DGPQETQLRVCCVMLILIRRRLLAGDIT 48
QEF D + +WD++++D +G + + CC +LI +R +L +
Sbjct: 369 QEFPLPDVIRLWDSIIADQMKARLFGKNDDGFNGAYDFLMDFCCSILIELRESILERNFA 428
Query: 49 SNLKLLQNYPPTNISHLLYVANKLRNL 75
++KLLQ + ++ LL + +L++L
Sbjct: 429 DSIKLLQAHFNVDMPKLLNLTFELQHL 455
>sp|Q95KI1|TB22A_MACFA TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis
GN=TBC1D22A PE=2 SV=2
Length = 497
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL-AGDITSNLKLLQNYPP 59
M+E + +WDT S+P+G L VC L+ R+ +L D L LQN P
Sbjct: 407 MREVPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPT 466
Query: 60 T-----NISHLLYVANKLR 73
+IS LL A +L+
Sbjct: 467 AHWDDEDISLLLAEAYRLK 485
>sp|Q95LL3|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B
PE=2 SV=1
Length = 505
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL-AGDITSNLKLLQNYP 58
M+E + +WDT S+P+G L VC LI R+ +L D L LLQN P
Sbjct: 415 MRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNLP 473
>sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3
Length = 505
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL-AGDITSNLKLLQNYP 58
M+E + +WDT S+P+G L VC LI R+ +L D L LLQN P
Sbjct: 415 MRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNLP 473
>sp|Q54TA5|TBC5B_DICDI TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum
GN=tbc1d5B PE=3 SV=1
Length = 1016
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCV-MLILIRRRLLAGDITSNLKLLQNYPPT 60
+EF+F D L+IWD L + G + C+ ML IR LL D LK + YPP
Sbjct: 618 REFHFDDVLNIWDALFA--YGENLILIDYFCISMLTYIREHLLKSDSIYALKRIYKYPPV 675
Query: 61 NISHLL 66
++L
Sbjct: 676 EDVYML 681
>sp|Q9CZ62|CEP97_MOUSE Centrosomal protein of 97 kDa OS=Mus musculus GN=Cep97 PE=2 SV=1
Length = 856
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPT 60
M++ N L D LSD + PQ + LI ++ LL G+I ++L++ Y P
Sbjct: 117 MEQVNSCTALQHLD--LSDNNIPQIGDVS----KLISLKTLLLHGNIITSLRMAPAYLPR 170
Query: 61 NISHLLYVANKLRNL 75
N+S L N++R+L
Sbjct: 171 NLSILSLAENEIRDL 185
>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum
GN=tbc1d5A PE=1 SV=1
Length = 1173
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPT- 60
Q F L +WD++ + E +C MLI+I+ +++ D + L++L +YP T
Sbjct: 711 QVFPLDSLLILWDSIFKE--SVTEFLPYICLTMLIMIKDQIIEKDYSECLQVLFHYPVTQ 768
Query: 61 NISHLLYVANKLR 73
++ LL A +R
Sbjct: 769 DMPMLLNTAYSVR 781
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2
Length = 648
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSN 50
+EF F D L +W+ L + GP L V C +L + R L+ SN
Sbjct: 502 REFPFPDVLRLWEVLWTGLPGPN-LHLLVACAILDMERDTLMLSGFGSN 549
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2
Length = 645
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSN 50
+EF F D L +W+ L + GP L V C +L + R L+ SN
Sbjct: 502 REFPFPDVLRLWEVLWTGLPGPN-LHLLVACAILDMERDTLMLSGFGSN 549
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,081,140
Number of Sequences: 539616
Number of extensions: 847444
Number of successful extensions: 2184
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2171
Number of HSP's gapped (non-prelim): 15
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)