Query 035017
Match_columns 76
No_of_seqs 102 out of 603
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:31:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4567 GTPase-activating prot 99.9 1E-24 2.2E-29 150.8 8.0 73 1-74 289-361 (370)
2 KOG1092 Ypt/Rab-specific GTPas 99.8 7.3E-21 1.6E-25 135.5 7.0 74 1-74 396-474 (484)
3 KOG1091 Ypt/Rab-specific GTPas 99.6 2E-15 4.3E-20 110.7 7.2 72 2-74 290-363 (625)
4 KOG1093 Predicted protein kina 99.2 4.8E-11 1E-15 88.4 5.2 71 2-75 522-592 (725)
5 KOG2224 Uncharacterized conser 98.4 5.8E-07 1.3E-11 65.9 4.3 70 2-72 656-728 (781)
6 PF00566 RabGAP-TBC: Rab-GTPas 98.2 1.5E-06 3.1E-11 55.8 3.8 40 1-43 175-214 (214)
7 KOG2197 Ypt/Rab-specific GTPas 98.0 1.9E-05 4.2E-10 58.1 5.9 71 2-73 368-441 (488)
8 KOG2223 Uncharacterized conser 98.0 1.9E-05 4E-10 57.9 5.4 60 2-64 486-546 (586)
9 COG5210 GTPase-activating prot 97.7 7E-05 1.5E-09 54.8 4.9 46 1-49 388-433 (496)
10 KOG2058 Ypt/Rab GTPase activat 97.5 0.00025 5.4E-09 51.8 5.1 52 4-58 331-383 (436)
11 KOG2595 Predicted GTPase activ 97.0 0.0027 5.8E-08 45.5 6.2 64 5-71 232-298 (395)
12 KOG3636 Uncharacterized conser 96.4 0.011 2.4E-07 44.0 5.9 67 5-73 198-271 (669)
13 KOG1102 Rab6 GTPase activator 96.1 0.014 2.9E-07 42.2 4.9 55 3-60 316-370 (397)
14 KOG2222 Uncharacterized conser 95.8 0.035 7.6E-07 41.8 5.9 66 4-72 345-417 (848)
15 PRK05255 hypothetical protein; 87.2 1.6 3.4E-05 28.5 4.3 39 33-71 107-148 (171)
16 KOG4436 Predicted GTPase activ 86.4 2.5 5.5E-05 33.7 5.7 64 3-69 754-822 (948)
17 KOG4347 GTPase-activating prot 86.2 1.5 3.2E-05 33.9 4.3 52 3-57 372-424 (671)
18 PF04751 DUF615: Protein of un 81.2 4.7 0.0001 25.8 4.5 39 33-71 96-137 (157)
19 COG3028 Uncharacterized protei 75.3 7.7 0.00017 25.5 4.2 37 35-71 119-158 (187)
20 TIGR01503 MthylAspMut_E methyl 70.0 13 0.00028 28.0 4.8 37 35-71 11-55 (480)
21 TIGR02508 type_III_yscG type I 65.9 25 0.00054 21.4 4.7 38 31-70 40-78 (115)
22 KOG2801 Probable Rab-GAPs [Int 51.5 71 0.0015 23.2 5.8 68 3-73 219-293 (559)
23 PF07340 Herpes_IE1: Cytomegal 50.3 25 0.00055 25.8 3.4 30 45-74 227-256 (392)
24 PHA02754 hypothetical protein; 50.1 20 0.00043 19.6 2.2 20 37-56 6-25 (67)
25 PF14961 BROMI: Broad-minded p 50.0 9.7 0.00021 31.8 1.4 27 23-49 1224-1250(1296)
26 PF10366 Vps39_1: Vacuolar sor 49.8 30 0.00065 20.5 3.3 22 49-70 84-105 (108)
27 smart00668 CTLH C-terminal to 44.1 37 0.00081 16.9 2.7 26 34-59 4-29 (58)
28 PF03791 KNOX2: KNOX2 domain ; 43.8 26 0.00055 18.5 2.0 26 31-57 18-43 (52)
29 PF05338 DUF717: Protein of un 38.0 17 0.00037 19.5 0.8 13 44-56 4-16 (55)
30 PF04510 DUF577: Family of unk 36.9 48 0.001 21.7 2.9 52 11-63 46-102 (174)
31 COG5661 Predicted secreted Zn- 34.4 35 0.00076 22.9 2.0 38 7-44 112-149 (210)
32 COG0152 PurC Phosphoribosylami 34.3 7.3 0.00016 26.8 -1.3 13 3-16 193-205 (247)
33 COG4865 Glutamate mutase epsil 33.6 89 0.0019 23.1 4.0 36 36-71 14-57 (485)
34 PF11372 DUF3173: Domain of un 33.2 48 0.001 17.9 2.1 23 49-73 8-30 (59)
35 PRK00732 fliE flagellar hook-b 31.8 50 0.0011 19.6 2.2 22 30-52 78-99 (102)
36 PF09324 DUF1981: Domain of un 30.8 78 0.0017 17.8 2.8 64 9-73 18-83 (86)
37 PF08928 DUF1910: Domain of un 29.1 50 0.0011 19.4 1.9 37 6-42 73-109 (117)
38 PF02049 FliE: Flagellar hook- 29.1 60 0.0013 18.7 2.2 22 30-52 72-93 (96)
39 PRK01482 fliE flagellar hook-b 27.9 72 0.0016 19.2 2.4 22 30-52 85-106 (108)
40 PF07443 HARP: HepA-related pr 27.3 17 0.00037 19.4 -0.3 18 46-63 36-53 (55)
41 PF01115 F_actin_cap_B: F-acti 26.4 80 0.0017 21.8 2.7 24 47-70 2-25 (242)
42 PF03000 NPH3: NPH3 family; I 25.9 84 0.0018 21.7 2.8 56 5-60 178-236 (258)
43 PF02260 FATC: FATC domain; I 25.3 48 0.001 15.6 1.1 15 61-75 8-22 (33)
44 PF02024 Leptin: Leptin; Inte 24.3 48 0.001 21.1 1.3 23 52-74 63-85 (146)
45 PRK06256 biotin synthase; Vali 24.1 2.3E+02 0.0051 19.5 4.8 38 36-74 8-48 (336)
46 PRK03907 fliE flagellar hook-b 23.1 86 0.0019 18.5 2.1 22 30-52 73-94 (97)
47 PF12672 DUF3793: Protein of u 22.8 65 0.0014 20.8 1.7 35 32-66 90-124 (176)
48 PF10607 CLTH: CTLH/CRA C-term 22.7 1.5E+02 0.0033 17.6 3.3 24 34-57 4-27 (145)
49 PF07499 RuvA_C: RuvA, C-termi 22.7 1.2E+02 0.0025 15.0 3.2 15 57-71 30-44 (47)
50 PF10968 DUF2770: Protein of u 22.4 1E+02 0.0022 15.0 1.9 18 23-40 13-30 (36)
51 smart00190 IL4_13 Interleukins 22.0 2E+02 0.0043 18.2 3.7 32 8-39 50-81 (138)
52 PRK00790 fliE flagellar hook-b 21.8 91 0.002 18.8 2.1 22 30-52 85-106 (109)
53 PRK12729 fliE flagellar hook-b 21.8 1.1E+02 0.0024 19.0 2.5 22 30-52 104-125 (127)
54 PF15300 INT_SG_DDX_CT_C: INTS 21.4 1.6E+02 0.0034 16.1 3.7 31 44-74 19-55 (65)
55 PF03195 DUF260: Protein of un 21.3 1.5E+02 0.0032 17.5 2.9 24 47-70 39-66 (101)
56 KOG0293 WD40 repeat-containing 21.2 1E+02 0.0022 23.3 2.6 59 5-74 121-187 (519)
No 1
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=99.91 E-value=1e-24 Score=150.85 Aligned_cols=73 Identities=55% Similarity=0.973 Sum_probs=70.9
Q ss_pred CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Q 035017 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRN 74 (76)
Q Consensus 1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~dv~~ll~~A~~l~~ 74 (76)
+||||++||++|||++||+++ .++|+.|+|+|||+..|+.|+++||+.+|++|||||+.|++.++..|.++|+
T Consensus 289 sQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ~yp~tdi~~~l~~A~~Lr~ 361 (370)
T KOG4567|consen 289 SQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLLQNYPTTDISKMLAVADSLRD 361 (370)
T ss_pred hccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998 8999999999999999999999999999999999999999999999999984
No 2
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=7.3e-21 Score=135.51 Aligned_cols=74 Identities=34% Similarity=0.612 Sum_probs=70.5
Q ss_pred CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCC-----CHHHHHHHHHhhhh
Q 035017 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPT-----NISHLLYVANKLRN 74 (76)
Q Consensus 1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~-----dv~~ll~~A~~l~~ 74 (76)
+||||+.-++|+||+|+|++++..+||+|+|+|.|+++|++|+++||.+.|.+|||+|+. +++.++..|+.++.
T Consensus 396 mRE~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~ 474 (484)
T KOG1092|consen 396 MREFPLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKS 474 (484)
T ss_pred HhhccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence 599999999999999999988899999999999999999999999999999999999985 69999999998764
No 3
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2e-15 Score=110.67 Aligned_cols=72 Identities=29% Similarity=0.492 Sum_probs=68.8
Q ss_pred cccchhcHHHHHH-HHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCC-CCHHHHHHHHHhhhh
Q 035017 2 QEFNFADNLHIWD-TLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPP-TNISHLLYVANKLRN 74 (76)
Q Consensus 2 rEf~l~~~~~lWD-~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~-~dv~~ll~~A~~l~~ 74 (76)
||||+.|++.+|| +++++.. +..++.|+.||||+++|+.|+..++..|++.|.|||. .|++.+++.|..++.
T Consensus 290 REfpL~dLLiVWD~~l~~d~p-r~~Lv~~m~VsmLL~IRd~Llss~~~tcL~~Lm~yP~~~Dv~~~iekAl~l~~ 363 (625)
T KOG1091|consen 290 REFPLQDLLIVWDHVLIFDSP-RGILVACMFVSMLLYIRDSLLSSEYQTCLQYLMNYPEIIDVDKFIEKALHLQK 363 (625)
T ss_pred chhHHHHHHHHhhhhhhccCc-hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 8999999999999 8888876 8999999999999999999999999999999999998 699999999999985
No 4
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.16 E-value=4.8e-11 Score=88.43 Aligned_cols=71 Identities=23% Similarity=0.386 Sum_probs=67.2
Q ss_pred cccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCCCHHHHHHHHHhhhhc
Q 035017 2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLRNL 75 (76)
Q Consensus 2 rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~dv~~ll~~A~~l~~~ 75 (76)
-+||++..+.+||.++.+++ .|.+++++|++.+.|+.|+..+|.||+.++...|+.|++.++++.+++.+.
T Consensus 522 hvlpl~kil~LwD~lml~~~---SFplmi~vAil~~lR~~LLa~nfne~illf~d~pdldId~~Ires~~l~e~ 592 (725)
T KOG1093|consen 522 HVLPLHKILHLWDNLMLGHS---SFPLMIGVAILIQLRDPLLACNFNECILLFSDLPDLDIDVCIRESYHLMET 592 (725)
T ss_pred hhccHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhhhhhhhCCchhheeeeccCCcccHHHHHHHHhhhhhC
Confidence 47999999999999999987 899999999999999999999999999999999999999999999988764
No 5
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=98.35 E-value=5.8e-07 Score=65.89 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=60.5
Q ss_pred cccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccC--HHHHHHHHhCCCC-CCHHHHHHHHHhh
Q 035017 2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGD--ITSNLKLLQNYPP-TNISHLLYVANKL 72 (76)
Q Consensus 2 rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~d--f~~~l~~Lq~~p~-~dv~~ll~~A~~l 72 (76)
||||-+.++|+|++.||+.- ...||+|+|+|++-...++.++.+ -.+.+..+.|+.. +|-+-++++|..+
T Consensus 656 ref~ea~airiweacwa~y~-tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgelilrkar~l 728 (781)
T KOG2224|consen 656 REFPEAEAIRIWEACWAHYL-TDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELILRKARGL 728 (781)
T ss_pred hcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhHHHHHHH
Confidence 89999999999999999865 679999999999999999988755 3577777788877 6999999998754
No 6
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=98.23 E-value=1.5e-06 Score=55.83 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=31.9
Q ss_pred CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHh
Q 035017 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL 43 (76)
Q Consensus 1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll 43 (76)
++++|.++++++|| ++.++. ..++.++|+|++...|++||
T Consensus 175 ~~~l~~~~~~~lwD-~l~~g~--~~~l~~~~lail~~~~~~il 214 (214)
T PF00566_consen 175 SRSLPFDDVLRLWD-FLLEGY--KFFLFFIALAILKYLRDQIL 214 (214)
T ss_dssp TTTS-HHHHHHHHH-HHHHCT--THHHHHHHHHHHHHTHHHHH
T ss_pred CCcCCHHHHHHHHH-HHHcCC--CcHHHHHHHHHHHHHHHHhC
Confidence 47899999999999 444543 24499999999999999986
No 7
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=1.9e-05 Score=58.08 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=60.2
Q ss_pred cccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHhCCCC-CCHHHHHHHHHhhh
Q 035017 2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAG--DITSNLKLLQNYPP-TNISHLLYVANKLR 73 (76)
Q Consensus 2 rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~--df~~~l~~Lq~~p~-~dv~~ll~~A~~l~ 73 (76)
|||..+|+++||+.+|++.. ..+|++|++.|++-.-++.|+.. +|.+.++.....+. .|...++..|....
T Consensus 368 rEf~~ed~l~LWEvlw~~~~-~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~ 441 (488)
T KOG2197|consen 368 REFEFEDSLRLWEVLWTDLP-SPHFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALE 441 (488)
T ss_pred cccccccHHHHHHHHHhcCc-cchHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccchhhhHHHHHHHHH
Confidence 89999999999999999876 55999999999999988888864 58888887866665 68888888877654
No 8
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=97.96 E-value=1.9e-05 Score=57.88 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=53.8
Q ss_pred cccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCC-CCHHH
Q 035017 2 QEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPP-TNISH 64 (76)
Q Consensus 2 rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~-~dv~~ 64 (76)
...|++-..|+||+++-+++ +|.+-.+++++...+++|+.+||..+.++|-++|. .-.+.
T Consensus 486 kslpldlacRIwDvy~rdge---eFlfr~~lgIlklyepkLl~mDf~~~~qfLtklp~dL~~ee 546 (586)
T KOG2223|consen 486 KSLPLDLACRIWDVYCRDGE---EFLFRTALGILKLYEPKLLVMDFIHVAQFLTKLPEDLTPEE 546 (586)
T ss_pred ccCChHHhhhhhheeeecch---HHHHHHHHHHHHHccchHhhhhHHHHHHHHHhCcccCCHHH
Confidence 35688999999999999987 99999999999999999999999999999999997 44333
No 9
>COG5210 GTPase-activating protein [General function prediction only]
Probab=97.70 E-value=7e-05 Score=54.84 Aligned_cols=46 Identities=28% Similarity=0.517 Sum_probs=38.4
Q ss_pred CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHH
Q 035017 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITS 49 (76)
Q Consensus 1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~ 49 (76)
.++||++.++|+||++|+++. ++..-+.+|++...|++++..+...
T Consensus 388 ~~~~p~e~~lriwD~lf~eg~---~~l~~~~~~~l~~~~~~l~~~~~~~ 433 (496)
T COG5210 388 VREFPLEYALRIWDCLFLEGS---SMLFQLALAILKLLRDKLLKLDSDE 433 (496)
T ss_pred HhcCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhhhhhhccCchh
Confidence 379999999999999999987 7777788888888888888766543
No 10
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.48 E-value=0.00025 Score=51.76 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=42.7
Q ss_pred cchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccC-HHHHHHHHhCCC
Q 035017 4 FNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGD-ITSNLKLLQNYP 58 (76)
Q Consensus 4 f~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~d-f~~~l~~Lq~~p 58 (76)
.|.+.++|+||++|.++. ++++-+++|++...++++++.+ -.+.++.++.+.
T Consensus 331 lP~~t~LrIwD~~f~eGs---kvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~ 383 (436)
T KOG2058|consen 331 LPSETVLRIWDCLFYEGS---KVLFRVALAILKKHEEEILKEDSSKEILRVLPDLT 383 (436)
T ss_pred ccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHH
Confidence 478899999999999987 8999999999999999999864 455555554444
No 11
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=97.04 E-value=0.0027 Score=45.47 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=53.0
Q ss_pred chhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccC--HHHHHHHHhCCCC-CCHHHHHHHHHh
Q 035017 5 NFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGD--ITSNLKLLQNYPP-TNISHLLYVANK 71 (76)
Q Consensus 5 ~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~d--f~~~l~~Lq~~p~-~dv~~ll~~A~~ 71 (76)
++..++|+.|.++|... -..+|+|.|++++-|.++++.| .+..=.+|+.+|. ...+.+++.+..
T Consensus 232 ~~~~vvRlfD~Flas~p---l~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s~~ 298 (395)
T KOG2595|consen 232 DIRIVVRLFDFFLASHP---LLPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKESVL 298 (395)
T ss_pred hHHHHHHHHHHHHhcCc---chhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHHHH
Confidence 45679999999999875 4999999999999999999865 4444556899997 689999988753
No 12
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=96.42 E-value=0.011 Score=43.97 Aligned_cols=67 Identities=18% Similarity=0.341 Sum_probs=55.8
Q ss_pred chhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc--C-HHHHHHHHhCCCC----CCHHHHHHHHHhhh
Q 035017 5 NFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAG--D-ITSNLKLLQNYPP----TNISHLLYVANKLR 73 (76)
Q Consensus 5 ~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~--d-f~~~l~~Lq~~p~----~dv~~ll~~A~~l~ 73 (76)
+.+.+.-+||-|+-..+ ..++.|+++-+|+.-|++|+.. | -.+++++|.|.|. -|++...+.|..+.
T Consensus 198 Stev~~a~WdlY~qqaD--PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 198 STEVCHALWDLYIQQAD--PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hHHHHHHHHHHHHhcCC--ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence 45677889999999875 5788889999999999999863 3 6899999999997 28999988887654
No 13
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=96.11 E-value=0.014 Score=42.17 Aligned_cols=55 Identities=27% Similarity=0.346 Sum_probs=50.5
Q ss_pred ccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCC
Q 035017 3 EFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPT 60 (76)
Q Consensus 3 Ef~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~ 60 (76)
.||++-+.++||.++.++ ......+..+++....+.+...+|.+.++.+++-++.
T Consensus 316 k~p~~~~~ri~d~~~~~g---~~i~~~~~~~l~~~~~~~~~~~~~e~~~~~l~~~~~~ 370 (397)
T KOG1102|consen 316 KFPLELVLRIWDALFVEG---VSILFRFSLALLKHKADDLLDLDFESLLSYLRVDLPK 370 (397)
T ss_pred cccHHHHHHHhHHHHHhc---hHHHHHHHHHHhhhhhHHHhhccHHHHHHHHhcccHh
Confidence 588999999999999998 4888899999999999999999999999999998763
No 14
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=95.76 E-value=0.035 Score=41.82 Aligned_cols=66 Identities=17% Similarity=0.324 Sum_probs=50.1
Q ss_pred cchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc-----cCHHHHHHHHhCCCC--CCHHHHHHHHHhh
Q 035017 4 FNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLA-----GDITSNLKLLQNYPP--TNISHLLYVANKL 72 (76)
Q Consensus 4 f~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~-----~df~~~l~~Lq~~p~--~dv~~ll~~A~~l 72 (76)
|...-.+|+||.+|-++. --++-+.++||.....+|.+ .+-.++...|..+|. .|++.++++|-.+
T Consensus 345 ~~~killriwd~~fy~g~---i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~~~ 417 (848)
T KOG2222|consen 345 FHMKILLRIWDFFFYEGG---INIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGEF 417 (848)
T ss_pred HHHHHHHHHHHhheecCc---chhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhhc
Confidence 556678999999999875 22344667787777777654 246788899999998 5999999998654
No 15
>PRK05255 hypothetical protein; Provisional
Probab=87.24 E-value=1.6 Score=28.46 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhCCCCCC---HHHHHHHHHh
Q 035017 33 VMLILIRRRLLAGDITSNLKLLQNYPPTN---ISHLLYVANK 71 (76)
Q Consensus 33 A~L~~~r~~Ll~~df~~~l~~Lq~~p~~d---v~~ll~~A~~ 71 (76)
--+..+|+.|+++|-+..=.++..||..| +..+++.|.+
T Consensus 107 h~lE~wRdrLi~~~d~al~e~~~~~P~~DrQ~LRqLiR~A~k 148 (171)
T PRK05255 107 HKLERWRDRLLAEGDDALTEFLEEYPDADRQQLRQLIRNAKK 148 (171)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHCchhhHHHHHHHHHHHHH
Confidence 36789999999977666777899999987 5556666654
No 16
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=86.36 E-value=2.5 Score=33.69 Aligned_cols=64 Identities=16% Similarity=0.308 Sum_probs=53.4
Q ss_pred ccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccC-HHHHHHHHhCCCC-C---CHHHHHHHH
Q 035017 3 EFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGD-ITSNLKLLQNYPP-T---NISHLLYVA 69 (76)
Q Consensus 3 Ef~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~d-f~~~l~~Lq~~p~-~---dv~~ll~~A 69 (76)
.||+-=|-|+.|.+|-.+. +-..-++.+++-..+..|++.| |.+++.++++.-+ . ..+.++.+-
T Consensus 754 Qf~lGfvarvfd~~flq~t---evifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p~~~~~emeki~~qv 822 (948)
T KOG4436|consen 754 QFPLGFVARVFDLIFLQGT---EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLPKMEHTEMEKIIKQV 822 (948)
T ss_pred hCcchHHHHHHHHHHhhcc---chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 5788889999999999876 8888999999999999999987 9999999998755 2 455555543
No 17
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=86.20 E-value=1.5 Score=33.94 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=45.8
Q ss_pred ccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHhCC
Q 035017 3 EFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAG-DITSNLKLLQNY 57 (76)
Q Consensus 3 Ef~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~-df~~~l~~Lq~~ 57 (76)
-+|++..+++=|++|-++. ..++-+++|++....++|++. |=++.|..|+||
T Consensus 372 ~m~le~a~~ilD~FF~eG~---rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y 424 (671)
T KOG4347|consen 372 LMPLEYAVRILDCFFYEGP---RVLFQIALAILKQNAERILSATDDGEAMMVLGNY 424 (671)
T ss_pred HcchHHHHHHHhhhhhccc---HHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHH
Confidence 3688999999999999986 788889999999999999975 468899999887
No 18
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=81.25 E-value=4.7 Score=25.80 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhCCCCCCH---HHHHHHHHh
Q 035017 33 VMLILIRRRLLAGDITSNLKLLQNYPPTNI---SHLLYVANK 71 (76)
Q Consensus 33 A~L~~~r~~Ll~~df~~~l~~Lq~~p~~dv---~~ll~~A~~ 71 (76)
-.+..+|+.|+++|-+..=.++..||..|. ..+++.|.+
T Consensus 96 h~lE~wRdrLi~~~~~al~e~~~~~p~~D~Q~LRqLiR~a~k 137 (157)
T PF04751_consen 96 HRLERWRDRLIADDDSALTEFLAEYPDADRQQLRQLIRNARK 137 (157)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHSTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHCChhhHHHHHHHHHHHHH
Confidence 368899999999888888888999999874 445555554
No 19
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.29 E-value=7.7 Score=25.54 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=28.1
Q ss_pred HHHHHHHHhccCHHHHHHHHhCCCCCC---HHHHHHHHHh
Q 035017 35 LILIRRRLLAGDITSNLKLLQNYPPTN---ISHLLYVANK 71 (76)
Q Consensus 35 L~~~r~~Ll~~df~~~l~~Lq~~p~~d---v~~ll~~A~~ 71 (76)
+.++|+.|+...=+-+-.++..||..| +..+++.|.+
T Consensus 119 lE~~RdrLia~GD~Alt~~l~~~P~aDrq~LR~LvRna~k 158 (187)
T COG3028 119 LEQLRDRLIAEGDGALTEFLNQYPDADRQQLRTLIRNAKK 158 (187)
T ss_pred HHHHHHHHHhcCchHHHHHHHHCCcccHHHHHHHHHHHHH
Confidence 578999999875566777888999976 5566766654
No 20
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=69.97 E-value=13 Score=27.98 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=31.6
Q ss_pred HHHHHHHHhcc-------CHHHHHHHHhCCCC-CCHHHHHHHHHh
Q 035017 35 LILIRRRLLAG-------DITSNLKLLQNYPP-TNISHLLYVANK 71 (76)
Q Consensus 35 L~~~r~~Ll~~-------df~~~l~~Lq~~p~-~dv~~ll~~A~~ 71 (76)
+.+.|+++++. ||.+++.+.+++|. .+....++.|.+
T Consensus 11 f~~~r~evl~~w~t~~~vd~~eav~y~k~~p~~k~f~~~L~~a~~ 55 (480)
T TIGR01503 11 FHKIREEVLQQWPTGKDVDLQDAVDYHKSIPAHKNFAEKLELAKK 55 (480)
T ss_pred HHHHHHHHhhcCCccccCCHHHHHHHHHhCCccccHHHHHHHHHh
Confidence 45778888886 89999999999998 788888888874
No 21
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.86 E-value=25 Score=21.43 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhc-cCHHHHHHHHhCCCCCCHHHHHHHHH
Q 035017 31 CCVMLILIRRRLLA-GDITSNLKLLQNYPPTNISHLLYVAN 70 (76)
Q Consensus 31 ~~A~L~~~r~~Ll~-~df~~~l~~Lq~~p~~dv~~ll~~A~ 70 (76)
||.|+... .|++ +||.+++.+++..|..|+++.+..+.
T Consensus 40 ~v~lIRls--SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce 78 (115)
T TIGR02508 40 AVQLIRLS--SLMNRGDYQSALQLGNKLCYPDLEPWLALCE 78 (115)
T ss_pred HHHHHHHH--HHHccchHHHHHHhcCCCCCchHHHHHHHHH
Confidence 44544432 3554 68999999999999999999877654
No 22
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.53 E-value=71 Score=23.22 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=47.7
Q ss_pred ccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHH----hccC--HHHHHHHHhCCCC-CCHHHHHHHHHhhh
Q 035017 3 EFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRL----LAGD--ITSNLKLLQNYPP-TNISHLLYVANKLR 73 (76)
Q Consensus 3 Ef~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~L----l~~d--f~~~l~~Lq~~p~-~dv~~ll~~A~~l~ 73 (76)
|.|+----|++|.++.++. ..+.-+++|++.-....= ++.| -.++-.+.+.+.. ...+.+++.|..+|
T Consensus 219 elplcyfarvfdvflvegy---kvlyrvalailkffhkvragqplesdsvkqdirtfvrdiaktvspekllekafair 293 (559)
T KOG2801|consen 219 ELPLCYFARVFDVFLVEGY---KVLYRVALAILKFFHKVRAGQPLESDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIR 293 (559)
T ss_pred cchHHHHHHHhhheeecch---HHHHHHHHHHHHHHHHhhcCCCCccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 6677777889999998875 777788899887655422 3334 2344555666655 58889999998776
No 23
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=50.33 E-value=25 Score=25.76 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=25.9
Q ss_pred cCHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Q 035017 45 GDITSNLKLLQNYPPTNISHLLYVANKLRN 74 (76)
Q Consensus 45 ~df~~~l~~Lq~~p~~dv~~ll~~A~~l~~ 74 (76)
..-++++.+|+|+|..|.+.+...+.++-+
T Consensus 227 n~~sQA~~fL~nlp~~d~d~v~~~g~~iik 256 (392)
T PF07340_consen 227 NGQSQAKAFLRNLPQCDPDEVNEYGQKIIK 256 (392)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 357999999999999999999999887653
No 24
>PHA02754 hypothetical protein; Provisional
Probab=50.05 E-value=20 Score=19.59 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=16.6
Q ss_pred HHHHHHhccCHHHHHHHHhC
Q 035017 37 LIRRRLLAGDITSNLKLLQN 56 (76)
Q Consensus 37 ~~r~~Ll~~df~~~l~~Lq~ 56 (76)
.++..|++.||++.|.-|..
T Consensus 6 Ei~k~i~eK~Fke~MRelkD 25 (67)
T PHA02754 6 EIPKAIMEKDFKEAMRELKD 25 (67)
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 56788999999999987754
No 25
>PF14961 BROMI: Broad-minded protein
Probab=49.96 E-value=9.7 Score=31.76 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=22.7
Q ss_pred CchHHHHHHHHHHHHHHHHHhccCHHH
Q 035017 23 PQETQLRVCCVMLILIRRRLLAGDITS 49 (76)
Q Consensus 23 ~~~~~~~i~~A~L~~~r~~Ll~~df~~ 49 (76)
..+|..|+|+|++.+..++|+...-++
T Consensus 1224 G~dyqvY~~VailkHlq~~ilq~~q~q 1250 (1296)
T PF14961_consen 1224 GPDYQVYICVAILKHLQPEILQHTQTQ 1250 (1296)
T ss_pred CccceeehhHHHHHHhhHHHHHhhhhc
Confidence 358999999999999999999855444
No 26
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.84 E-value=30 Score=20.49 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=18.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH
Q 035017 49 SNLKLLQNYPPTNISHLLYVAN 70 (76)
Q Consensus 49 ~~l~~Lq~~p~~dv~~ll~~A~ 70 (76)
.++..||++|+.|.+-|++.|.
T Consensus 84 ~iv~yL~~L~~~~~dLI~~~s~ 105 (108)
T PF10366_consen 84 TIVQYLQKLGNEDLDLIFEYSD 105 (108)
T ss_pred HHHHHHHhCChhhhHHHHHhcc
Confidence 4589999999999988887663
No 27
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=44.08 E-value=37 Score=16.91 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHhCCCC
Q 035017 34 MLILIRRRLLAGDITSNLKLLQNYPP 59 (76)
Q Consensus 34 ~L~~~r~~Ll~~df~~~l~~Lq~~p~ 59 (76)
-...++..++++|.+.++..++...+
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~ 29 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKP 29 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCH
Confidence 34678899999999999999977643
No 28
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=43.78 E-value=26 Score=18.49 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhCC
Q 035017 31 CCVMLILIRRRLLAGDITSNLKLLQNY 57 (76)
Q Consensus 31 ~~A~L~~~r~~Ll~~df~~~l~~Lq~~ 57 (76)
-+.||.+.|++|-+ .|.+++.++.++
T Consensus 18 Yc~~L~kykeeL~~-p~~EA~~f~~~i 43 (52)
T PF03791_consen 18 YCDMLVKYKEELQR-PFQEAMEFCREI 43 (52)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 36789999999766 678999888764
No 29
>PF05338 DUF717: Protein of unknown function (DUF717); InterPro: IPR008002 This entry is represented by the Human herpesvirus 8, Orf30 protein; it is a family of uncharacterised viral proteins.
Probab=37.95 E-value=17 Score=19.45 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=10.9
Q ss_pred ccCHHHHHHHHhC
Q 035017 44 AGDITSNLKLLQN 56 (76)
Q Consensus 44 ~~df~~~l~~Lq~ 56 (76)
+.||.+|++++.+
T Consensus 4 e~Df~eC~~FF~r 16 (55)
T PF05338_consen 4 ENDFEECLKFFSR 16 (55)
T ss_pred HHHHHHHHHHHcC
Confidence 5689999999954
No 30
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=36.91 E-value=48 Score=21.74 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=32.1
Q ss_pred HHHHHHhcCCC--CCchHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHhCCCCCCHH
Q 035017 11 HIWDTLLSDPD--GPQETQLRVCCVMLILIRRRLLA---GDITSNLKLLQNYPPTNIS 63 (76)
Q Consensus 11 ~lWD~l~a~~~--~~~~~~~~i~~A~L~~~r~~Ll~---~df~~~l~~Lq~~p~~dv~ 63 (76)
-|||++.+... .-..+++|+|+.|.. ..+-+.. .=+.++.+.|.+-...|++
T Consensus 46 eL~d~Ils~~~~e~~kA~~IF~~L~~~l-~~efl~~~~~~L~~~~~~~L~~p~~~d~~ 102 (174)
T PF04510_consen 46 ELSDCILSLSENEPVKAFHIFICLPMPL-YGEFLIPFMENLLPEISKVLLPPEEVDVE 102 (174)
T ss_pred hHHHHHHHhhccchHHHHHHHHhCCchh-hhhHHHHHHHHHHHHHHHHcCCchhccHH
Confidence 47899988533 256788999999766 6665543 2245666666443334544
No 31
>COG5661 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.37 E-value=35 Score=22.85 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=22.4
Q ss_pred hcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhc
Q 035017 7 ADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLA 44 (76)
Q Consensus 7 ~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~ 44 (76)
+++-.+||+++++-..-.+-|.=++-.-=..+...|++
T Consensus 112 pElalvwdtlladikrHEErH~eiar~har~mEkaL~s 149 (210)
T COG5661 112 PELALVWDTLLADIKRHEERHAEIARYHAREMEKALLS 149 (210)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788999999984212244444444444444545444
No 32
>COG0152 PurC Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase [Nucleotide transport and metabolism]
Probab=34.26 E-value=7.3 Score=26.82 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=11.1
Q ss_pred ccchhcHHHHHHHH
Q 035017 3 EFNFADNLHIWDTL 16 (76)
Q Consensus 3 Ef~l~~~~~lWD~l 16 (76)
|++ +|+.|+||.=
T Consensus 193 Eis-PDs~R~Wd~~ 205 (247)
T COG0152 193 EIS-PDSCRLWDAE 205 (247)
T ss_pred eeC-CCcccccccc
Confidence 778 9999999964
No 33
>COG4865 Glutamate mutase epsilon subunit [Amino acid transport and metabolism]
Probab=33.58 E-value=89 Score=23.14 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=28.1
Q ss_pred HHHHHHHhc-------cCHHHHHHHHhCCCC-CCHHHHHHHHHh
Q 035017 36 ILIRRRLLA-------GDITSNLKLLQNYPP-TNISHLLYVANK 71 (76)
Q Consensus 36 ~~~r~~Ll~-------~df~~~l~~Lq~~p~-~dv~~ll~~A~~ 71 (76)
+.+|+++++ -||.+++++=+.+|+ .+....+++|.+
T Consensus 14 ~~Ir~~~l~~w~~~~dvDf~dAv~FH~SLP~HKrF~~~lE~a~~ 57 (485)
T COG4865 14 MTIRQQVLKTWETGKDVDFEDAVKFHQSLPEHKRFSLALEKADK 57 (485)
T ss_pred HHHHHHHHhhhcccccccHHHHHHHHhcCCchhhHHHHHHhhhh
Confidence 456777765 379999999999999 477777777764
No 34
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=33.16 E-value=48 Score=17.91 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=17.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhh
Q 035017 49 SNLKLLQNYPPTNISHLLYVANKLR 73 (76)
Q Consensus 49 ~~l~~Lq~~p~~dv~~ll~~A~~l~ 73 (76)
+.|.+ .||+.....|+++|..+.
T Consensus 8 dLi~l--Gf~~~tA~~IIrqAK~~l 30 (59)
T PF11372_consen 8 DLIEL--GFSESTARDIIRQAKALL 30 (59)
T ss_pred HHHHc--CCCHHHHHHHHHHHHHHH
Confidence 34444 788888999999998753
No 35
>PRK00732 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=31.85 E-value=50 Score=19.64 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhccCHHHHHH
Q 035017 30 VCCVMLILIRRRLLAGDITSNLK 52 (76)
Q Consensus 30 i~~A~L~~~r~~Ll~~df~~~l~ 52 (76)
+.+-++.++|+++++ -|.|+|+
T Consensus 78 lslq~~vqVRNKlve-AYqEIMr 99 (102)
T PRK00732 78 VAVSTLVSVRDRVIQ-AYEEIMR 99 (102)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHh
Confidence 566788999999987 5667664
No 36
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=30.80 E-value=78 Score=17.83 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCC--CCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCCCHHHHHHHHHhhh
Q 035017 9 NLHIWDTLLSDPD--GPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLLYVANKLR 73 (76)
Q Consensus 9 ~~~lWD~l~a~~~--~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~dv~~ll~~A~~l~ 73 (76)
.++=+-.+++... ...++++- |+..+..-+.+-++.+...++..|..-...+-+.++..|...-
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~-ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILE-CILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHH-HHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3444555555432 13344444 4455555555555667888888887777666677888887654
No 37
>PF08928 DUF1910: Domain of unknown function (DUF1910); InterPro: IPR015024 This domain is found in hypothetical bacterial proteins.
Probab=29.13 E-value=50 Score=19.37 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=24.9
Q ss_pred hhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHH
Q 035017 6 FADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRL 42 (76)
Q Consensus 6 l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~L 42 (76)
+++++.-|...+....+....+-.+++|+|..+.++.
T Consensus 73 ~~~~l~~~e~~~~~~~~Y~~~lwllsLgiLL~~~~~~ 109 (117)
T PF08928_consen 73 YPNILDYFEEIWDENDGYIYMLWLLSLGILLEIDDEL 109 (117)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHCCCHHH
Confidence 3456667777666544355677788888888777743
No 38
>PF02049 FliE: Flagellar hook-basal body complex protein FliE; InterPro: IPR001624 Four genes from the major Bacillus subtilis chemotaxis locus have been shown to encode proteins that are similar to the Salmonella typhimurium FlgB, FlgC, FlgG and FliF proteins; a further gene product is similar to the Escherichia coli FliE protein []. All of these proteins are thought to form part of the hook-basal body complex of the bacterial flagella []. The FlgB, FlgC and FlgG proteins are components of the proximal and distal rods; FliF forms the M-ring that anchors the rod assembly to the membrane; but the role of FliE has not yet been determined []. The similarity between the proteins in these two organisms suggests that the structures of the M-ring and the rod may be similar []. Nevertheless, some differences in size and amino acid composition between some of the homologues suggest the basal body proteins may be organised slightly differently within B. subtilis []. From gel electrophoresis and autoradiography of 35S-labelled S. typhimurium hook-basal body complexes and the deduced number of sulphur-containing residues in FliE, the stoichiometry of the protein in the hook-basal body complex has been estimated to be about nine subunits []. FliE does not undergo cleavage of a signal peptide, nor does it show any similarity to the axial components like the rod or hook proteins, which are thought to be exported by the flagellum-specific export pathway []. On this evidence, it has been suggested that FliE may be in the vicinity of the MS ring, perhaps acting as an adaptor protein between ring and rod substructures [].; GO: 0003774 motor activity, 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum
Probab=29.12 E-value=60 Score=18.69 Aligned_cols=22 Identities=5% Similarity=0.234 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhccCHHHHHH
Q 035017 30 VCCVMLILIRRRLLAGDITSNLK 52 (76)
Q Consensus 30 i~~A~L~~~r~~Ll~~df~~~l~ 52 (76)
+.+-++..+|+++++ -|.|+|+
T Consensus 72 lslq~~vqVRnK~v~-AYqEImr 93 (96)
T PF02049_consen 72 LSLQLAVQVRNKAVE-AYQEIMR 93 (96)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHh
Confidence 567789999999987 5666664
No 39
>PRK01482 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=27.94 E-value=72 Score=19.23 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhccCHHHHHH
Q 035017 30 VCCVMLILIRRRLLAGDITSNLK 52 (76)
Q Consensus 30 i~~A~L~~~r~~Ll~~df~~~l~ 52 (76)
+.+.+..++|+++++ .|.|+|+
T Consensus 85 lslql~vqVRNKlVe-AYqEIMr 106 (108)
T PRK01482 85 MNLSIAKAVVERSIK-AYQDIIN 106 (108)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHh
Confidence 566788999999987 5777775
No 40
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=27.29 E-value=17 Score=19.36 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=12.5
Q ss_pred CHHHHHHHHhCCCCCCHH
Q 035017 46 DITSNLKLLQNYPPTNIS 63 (76)
Q Consensus 46 df~~~l~~Lq~~p~~dv~ 63 (76)
|++..|+.++++|...++
T Consensus 36 Dy~~L~~~~~~l~~V~l~ 53 (55)
T PF07443_consen 36 DYSTLMKKVRNLPQVQLE 53 (55)
T ss_pred HHHHHHHHHhcCCceEee
Confidence 677778888887765443
No 41
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin (see IPR007122 from INTERPRO) and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta. Neither of the subunits shows sequence similarity to other filament-capping proteins []. The beta subunit is a protein of about 280 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0005737 cytoplasm, 0008290 F-actin capping protein complex; PDB: 3AAE_D 3LK4_Q 2KXP_B 2KZ7_B 3AA1_B 3LK2_B 3AA7_B 3AAA_B 1IZN_B 3AA0_B ....
Probab=26.37 E-value=80 Score=21.76 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Q 035017 47 ITSNLKLLQNYPPTNISHLLYVAN 70 (76)
Q Consensus 47 f~~~l~~Lq~~p~~dv~~ll~~A~ 70 (76)
+..++.+++++||.+++.-+..-.
T Consensus 2 ~d~aLdLlRRlpP~~ie~nl~~l~ 25 (242)
T PF01115_consen 2 LDAALDLLRRLPPKKIEKNLSNLI 25 (242)
T ss_dssp HHHHHHHHTTS-GGGHHHHHHHHH
T ss_pred hhHHHHHHhhCChHHHHHHHHHHH
Confidence 567899999999976665554433
No 42
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=25.90 E-value=84 Score=21.68 Aligned_cols=56 Identities=13% Similarity=0.005 Sum_probs=31.6
Q ss_pred chhcHHHHHHHHhcCC--CCCchHHHHHHHHHHHHHHHHHhccC-HHHHHHHHhCCCCC
Q 035017 5 NFADNLHIWDTLLSDP--DGPQETQLRVCCVMLILIRRRLLAGD-ITSNLKLLQNYPPT 60 (76)
Q Consensus 5 ~l~~~~~lWD~l~a~~--~~~~~~~~~i~~A~L~~~r~~Ll~~d-f~~~l~~Lq~~p~~ 60 (76)
++..|-++||.|+++- +.....--|+.+|-.+--...--... |.-+=.+|+.-|..
T Consensus 178 ~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~l 236 (258)
T PF03000_consen 178 SLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGL 236 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccC
Confidence 4567889999999962 33456666666665443332222222 33333456666654
No 43
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=25.25 E-value=48 Score=15.56 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=12.1
Q ss_pred CHHHHHHHHHhhhhc
Q 035017 61 NISHLLYVANKLRNL 75 (76)
Q Consensus 61 dv~~ll~~A~~l~~~ 75 (76)
+|+.+|+.|.+...+
T Consensus 8 qV~~LI~~At~~~nL 22 (33)
T PF02260_consen 8 QVDELISEATDPENL 22 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHH
Confidence 688999999877654
No 44
>PF02024 Leptin: Leptin; InterPro: IPR000065 Leptin, a metabolic monitor of food intake and energy need, is expressed by the ob obesity gene. The protein may function as part of a signalling pathway from adipose tissue that acts to regulate the size of the body fat depot [], the hormone effectively turning the brain's appetite message off when it senses that the body is satiated. Obese humans have high levels of the protein, suggesting a similarity to type II (adult onset) diabetes, in which sufferers over-produce insulin, but can't respond to it metabolically - they have become insulin resistant. Similarly, it is thought that obese individuals may be leptin resistant.; GO: 0005179 hormone activity, 0007165 signal transduction, 0005576 extracellular region; PDB: 1AX8_A.
Probab=24.31 E-value=48 Score=21.13 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=15.9
Q ss_pred HHHhCCCCCCHHHHHHHHHhhhh
Q 035017 52 KLLQNYPPTNISHLLYVANKLRN 74 (76)
Q Consensus 52 ~~Lq~~p~~dv~~ll~~A~~l~~ 74 (76)
+.|+++|.-|+..|.....++|.
T Consensus 63 ~IL~sLps~nv~QIsnDlenLr~ 85 (146)
T PF02024_consen 63 QILTSLPSGNVSQISNDLENLRD 85 (146)
T ss_dssp HHHHTS--HHHHHHHHHHHHHHH
T ss_pred HHHHhCChhhHHHHHHHHHHHHH
Confidence 34677888888888888887775
No 45
>PRK06256 biotin synthase; Validated
Probab=24.06 E-value=2.3e+02 Score=19.52 Aligned_cols=38 Identities=32% Similarity=0.527 Sum_probs=27.5
Q ss_pred HHHHHHHhcc---CHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Q 035017 36 ILIRRRLLAG---DITSNLKLLQNYPPTNISHLLYVANKLRN 74 (76)
Q Consensus 36 ~~~r~~Ll~~---df~~~l~~Lq~~p~~dv~~ll~~A~~l~~ 74 (76)
..+.++.+++ ...+++.+| +.|..++..+.+.|..+|+
T Consensus 8 ~~~~~~~~~g~~~~~~e~~~ll-~~~~~~~~~L~~~A~~~r~ 48 (336)
T PRK06256 8 LKLARKLLEGEGLTKEEALALL-EIPDDDLLELLAAAYEVRK 48 (336)
T ss_pred HHHHHHHHcCCCCCHHHHHHHH-cCChHHHHHHHHHHHHHHH
Confidence 3445555554 467888887 5667789999999998874
No 46
>PRK03907 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=23.06 E-value=86 Score=18.49 Aligned_cols=22 Identities=9% Similarity=0.301 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHH
Q 035017 30 VCCVMLILIRRRLLAGDITSNLK 52 (76)
Q Consensus 30 i~~A~L~~~r~~Ll~~df~~~l~ 52 (76)
+.+-+..++|+++++ .|.|+|+
T Consensus 73 ls~q~~vqVRNKlve-AYqEIMr 94 (97)
T PRK03907 73 TSMKLMLEVRNKAIS-AYKEILR 94 (97)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHc
Confidence 456688899999987 5666664
No 47
>PF12672 DUF3793: Protein of unknown function (DUF3793); InterPro: IPR024523 This family of bacterial proteins is functionally uncharacterised. The proteins in this family contain two conserved sequence motifs: PHE and LGYP.
Probab=22.85 E-value=65 Score=20.77 Aligned_cols=35 Identities=14% Similarity=0.420 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhCCCCCCHHHHH
Q 035017 32 CVMLILIRRRLLAGDITSNLKLLQNYPPTNISHLL 66 (76)
Q Consensus 32 ~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~dv~~ll 66 (76)
-++|..++..+.+.+|-.=+..+..||.-||.--+
T Consensus 90 ~~~L~~L~~R~~~~~FPHEIGiFLGYPleDV~GFI 124 (176)
T PF12672_consen 90 EDCLEHLKKRFESGEFPHEIGIFLGYPLEDVKGFI 124 (176)
T ss_pred HHHHHHHHHHhcCCCCCchhHhccCCCHHHHHHHH
Confidence 45777777777666687778888888887776655
No 48
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=22.71 E-value=1.5e+02 Score=17.60 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=17.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHhCC
Q 035017 34 MLILIRRRLLAGDITSNLKLLQNY 57 (76)
Q Consensus 34 ~L~~~r~~Ll~~df~~~l~~Lq~~ 57 (76)
....+++.|.++|.++++..++..
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~ 27 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNEN 27 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345677888888888888887543
No 49
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=22.65 E-value=1.2e+02 Score=15.05 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=11.1
Q ss_pred CCCCCHHHHHHHHHh
Q 035017 57 YPPTNISHLLYVANK 71 (76)
Q Consensus 57 ~p~~dv~~ll~~A~~ 71 (76)
-|..+++.+|+.|.+
T Consensus 30 ~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 30 KPGMDVEELIKQALK 44 (47)
T ss_dssp STTS-HHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHh
Confidence 466899999999865
No 50
>PF10968 DUF2770: Protein of unknown function (DUF2770); InterPro: IPR024494 Members in this family of proteins from Enterobacteria are annotated as YceO; however, currently no function is known.
Probab=22.39 E-value=1e+02 Score=15.02 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHHHHHHH
Q 035017 23 PQETQLRVCCVMLILIRR 40 (76)
Q Consensus 23 ~~~~~~~i~~A~L~~~r~ 40 (76)
+.++..|+|+..++..-|
T Consensus 13 ReHlmlYi~Lw~lL~~~D 30 (36)
T PF10968_consen 13 REHLMLYICLWLLLAALD 30 (36)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999998876543
No 51
>smart00190 IL4_13 Interleukins 4 and 13. Interleukins-4 and -13 are cytokines involved in inflammatory and immune responses. IL-4 stimulates B and T cells.
Probab=22.02 E-value=2e+02 Score=18.18 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=20.5
Q ss_pred cHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH
Q 035017 8 DNLHIWDTLLSDPDGPQETQLRVCCVMLILIR 39 (76)
Q Consensus 8 ~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r 39 (76)
.-..+||.+.+..+-...-.++=+.-.|.++-
T Consensus 50 ~e~~V~dV~~~~kNtTe~e~~CrA~~vLr~~y 81 (138)
T smart00190 50 TEMMVPDVLAATKNTTEKELFCRALKVLRNFY 81 (138)
T ss_pred ccccHHHHhcccCCCcchhHhhHHHHHHHHHH
Confidence 34689999999876344444555555555555
No 52
>PRK00790 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=21.79 E-value=91 Score=18.76 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHH
Q 035017 30 VCCVMLILIRRRLLAGDITSNLK 52 (76)
Q Consensus 30 i~~A~L~~~r~~Ll~~df~~~l~ 52 (76)
+.+-+..++|+++++ -|.|+|+
T Consensus 85 lslq~~vqVRNKlVe-AYqEIMr 106 (109)
T PRK00790 85 QALQTAVAIRDKVVE-AYLEILR 106 (109)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHc
Confidence 456788899999987 5666664
No 53
>PRK12729 fliE flagellar hook-basal body protein FliE; Provisional
Probab=21.76 E-value=1.1e+02 Score=19.02 Aligned_cols=22 Identities=9% Similarity=-0.010 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhccCHHHHHH
Q 035017 30 VCCVMLILIRRRLLAGDITSNLK 52 (76)
Q Consensus 30 i~~A~L~~~r~~Ll~~df~~~l~ 52 (76)
+.+.++.++|+++++ .|.|+|.
T Consensus 104 lSlql~vQVRNKvVe-AYqEIM~ 125 (127)
T PRK12729 104 VALTFTKTIADGVVR-AYRELTS 125 (127)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHh
Confidence 556788999999987 5777765
No 54
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=21.36 E-value=1.6e+02 Score=16.12 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=24.1
Q ss_pred ccCHHHHHHHHhCCCCC-C-----HHHHHHHHHhhhh
Q 035017 44 AGDITSNLKLLQNYPPT-N-----ISHLLYVANKLRN 74 (76)
Q Consensus 44 ~~df~~~l~~Lq~~p~~-d-----v~~ll~~A~~l~~ 74 (76)
..+|+.+..+|...... + ++.+++.|..+++
T Consensus 19 Gr~ye~iF~lL~~vqG~~~~r~~fv~~~IkEA~RFkR 55 (65)
T PF15300_consen 19 GRNYEKIFKLLEQVQGPLEVRKQFVEMIIKEAARFKR 55 (65)
T ss_pred CCcHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999988763 3 7788888887653
No 55
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=21.35 E-value=1.5e+02 Score=17.53 Aligned_cols=24 Identities=38% Similarity=0.695 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHH
Q 035017 47 ITSNLKLLQNYPPTN----ISHLLYVAN 70 (76)
Q Consensus 47 f~~~l~~Lq~~p~~d----v~~ll~~A~ 70 (76)
-+.++++|++.|+.+ ++.++.+|.
T Consensus 39 ~sni~k~L~~~~~~~R~~a~~Sl~yEA~ 66 (101)
T PF03195_consen 39 VSNISKMLQELPPEQREDAMRSLVYEAN 66 (101)
T ss_pred hhHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 467888899998743 666666664
No 56
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.24 E-value=1e+02 Score=23.33 Aligned_cols=59 Identities=29% Similarity=0.291 Sum_probs=36.8
Q ss_pred chhcHHHHHHHHhcCCCCC-chHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCC-------CCCCHHHHHHHHHhhhh
Q 035017 5 NFADNLHIWDTLLSDPDGP-QETQLRVCCVMLILIRRRLLAGDITSNLKLLQNY-------PPTNISHLLYVANKLRN 74 (76)
Q Consensus 5 ~l~~~~~lWD~l~a~~~~~-~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~-------p~~dv~~ll~~A~~l~~ 74 (76)
..+...+||+.++..++.. .+... -+.+..-|++|++ -|++| |+--++.++++|.++++
T Consensus 121 ~~kk~~el~~sll~sn~~~~ne~~~---~~~~~n~R~~ll~--------elskyi~p~illP~rRLehLl~qAv~~Q~ 187 (519)
T KOG0293|consen 121 NKKKFHELASSLLVSNDQFSNEENT---TAQLNNERDKLLD--------ELSKYIPPNILLPKRRLEHLLEQAVKYQR 187 (519)
T ss_pred hHHHHHHHHHHHhccccccccccch---hhhhchhHHHHHH--------HHHhhCCHhhcCChHHHHHHHHHHHHHHH
Confidence 3456789999999876521 11111 4555555666554 34444 33368999999998874
Done!