Query 035017
Match_columns 76
No_of_seqs 102 out of 603
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:55:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qwl_A TBC1 domain family memb 99.7 7.1E-18 2.4E-22 115.1 8.3 71 1-74 213-284 (294)
2 1fkm_A Protein (GYP1P), ORF YO 99.7 6.3E-18 2.2E-22 118.6 5.6 74 1-74 242-380 (396)
3 2qfz_A TBC1 domain family memb 99.7 4E-17 1.4E-21 112.1 8.4 74 1-74 255-334 (345)
4 2qq8_A TBC1 domain family memb 99.6 3.4E-16 1.2E-20 107.5 7.4 70 1-73 239-309 (334)
5 4hl4_A TBC1 domain family memb 99.6 5.3E-15 1.8E-19 99.8 8.1 71 1-74 213-287 (292)
6 3hzj_A Rabgap1L, RAB GTPase-ac 99.5 7.5E-15 2.6E-19 99.6 4.5 70 1-73 200-275 (310)
7 3qye_A TBC1 domain family memb 99.5 2.3E-14 7.7E-19 97.9 6.7 70 1-73 234-308 (331)
8 2p0t_A UPF0307 protein pspto_4 81.1 3.1 0.0001 26.3 4.7 39 33-71 106-147 (176)
9 2p58_C Putative type III secre 59.5 24 0.00083 20.7 4.8 38 31-70 41-79 (116)
10 1ccw_B Protein (glutamate muta 55.5 22 0.00076 25.7 4.9 37 35-71 13-57 (483)
11 2uwj_G Type III export protein 53.4 24 0.00081 20.7 4.0 38 31-70 40-78 (115)
12 4b0z_A RPN12, 26S proteasome r 36.0 29 0.001 22.1 2.8 40 37-76 13-62 (229)
13 2dla_A 397AA long hypothetical 35.7 13 0.00045 24.0 1.1 31 40-71 13-44 (222)
14 2cwy_A Hypothetical protein TT 33.2 51 0.0017 18.2 3.2 61 12-72 23-91 (94)
15 2huo_A Inositol oxygenase; pro 30.7 1.2E+02 0.0041 20.5 5.1 46 31-76 56-114 (289)
16 2vy8_A Polymerase basic protei 29.5 70 0.0024 19.3 3.5 27 28-54 57-83 (157)
17 1bl1_A Parathyroid hormone rec 27.0 13 0.00044 16.9 -0.1 19 48-68 1-19 (31)
18 1w1n_A Phosphatidylinositol 3- 25.8 20 0.00069 16.3 0.5 15 61-75 8-22 (33)
19 2ld7_B Paired amphipathic heli 24.0 69 0.0024 17.0 2.6 42 31-72 11-55 (75)
20 2ijq_A Hypothetical protein; s 21.8 1.5E+02 0.005 18.1 5.5 61 12-72 54-127 (161)
21 3aa0_B F-actin-capping protein 21.5 77 0.0026 20.9 2.8 24 47-70 6-29 (244)
No 1
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=115.07 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=66.3
Q ss_pred CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCH-HHHHHHHhCCCCCCHHHHHHHHHhhhh
Q 035017 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDI-TSNLKLLQNYPPTNISHLLYVANKLRN 74 (76)
Q Consensus 1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df-~~~l~~Lq~~p~~dv~~ll~~A~~l~~ 74 (76)
+||||+++++|+||++|+++. +++.++|+|+|..+|++|++.+| ++++++||++|+.|++.+++.|..+++
T Consensus 213 ~~~~p~~~vlRlWD~~~~~~~---~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~di~~ll~~A~~l~~ 284 (294)
T 3qwl_A 213 AGCLPESSLQRVWDKVVSGSC---KILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAIDLWH 284 (294)
T ss_dssp TTTSCHHHHHHHHHHHHTTCS---THHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence 589999999999999999654 89999999999999999999997 788999999999999999999999864
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=99.71 E-value=6.3e-18 Score=118.64 Aligned_cols=74 Identities=31% Similarity=0.499 Sum_probs=66.7
Q ss_pred CcccchhcHHHHHHHHhcCC---------------------------------------------------C--------
Q 035017 1 MQEFNFADNLHIWDTLLSDP---------------------------------------------------D-------- 21 (76)
Q Consensus 1 ~rEf~l~~~~~lWD~l~a~~---------------------------------------------------~-------- 21 (76)
+||||+++++|+||++|+++ .
T Consensus 242 ~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (396)
T 1fkm_A 242 MREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQ 321 (396)
T ss_dssp GGGSCHHHHHHHHHHHHHHHC-----------------------------------------------------------
T ss_pred HhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccc
Confidence 48999999999999999976 1
Q ss_pred -CCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCCC-----CHHHHHHHHHhhhh
Q 035017 22 -GPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPPT-----NISHLLYVANKLRN 74 (76)
Q Consensus 22 -~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~~-----dv~~ll~~A~~l~~ 74 (76)
+...++.|+|+|||..+|++|++.||+++|++||++|+. |++.+++.|..++.
T Consensus 322 ~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~ 380 (396)
T 1fkm_A 322 SSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQS 380 (396)
T ss_dssp -CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence 124799999999999999999999999999999999984 79999999998774
No 3
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=99.70 E-value=4e-17 Score=112.15 Aligned_cols=74 Identities=36% Similarity=0.596 Sum_probs=67.6
Q ss_pred CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHhCCCCC-----CHHHHHHHHHhhhh
Q 035017 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLL-AGDITSNLKLLQNYPPT-----NISHLLYVANKLRN 74 (76)
Q Consensus 1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll-~~df~~~l~~Lq~~p~~-----dv~~ll~~A~~l~~ 74 (76)
+||||+++++|+||++|+++.+...|+.|+|+|+|...|++|+ ..||++++++||++|+. |++.+++.|..++.
T Consensus 255 ~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~~ 334 (345)
T 2qfz_A 255 MREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLKF 334 (345)
T ss_dssp TTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHHH
Confidence 5899999999999999999874456999999999999999999 48999999999999986 69999999999875
No 4
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=107.48 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=66.5
Q ss_pred CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCC-CCHHHHHHHHHhhh
Q 035017 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPP-TNISHLLYVANKLR 73 (76)
Q Consensus 1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~-~dv~~ll~~A~~l~ 73 (76)
+++||+++++|+||++|+++. .++.++|+|++...|++|++.||++++++||++|. .|++.+++.|..++
T Consensus 239 ~~~lp~~~~lriWD~~l~eg~---~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~~d~~~l~~~a~~l~ 309 (334)
T 2qq8_A 239 SKSLPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPEDLPAEELFASIATIQ 309 (334)
T ss_dssp TTTSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTTCCHHHHHHHHHHCC
T ss_pred cccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCcCCHHHHHHHHHHcc
Confidence 589999999999999999976 89999999999999999999999999999999998 69999999999875
No 5
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=99.58 E-value=5.3e-15 Score=99.81 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=65.2
Q ss_pred Ccccc-hhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHhCCCC-CCHHHHHHHHHhhhh
Q 035017 1 MQEFN-FADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAG--DITSNLKLLQNYPP-TNISHLLYVANKLRN 74 (76)
Q Consensus 1 ~rEf~-l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~--df~~~l~~Lq~~p~-~dv~~ll~~A~~l~~ 74 (76)
+++++ +++++|+||++|+++. .+++|+|+|++...|++|++. |+++++.+|+++|. .|++.+++.|..+++
T Consensus 213 ~~~l~~~~~~~rlWD~~l~~g~---~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~~A~~l~~ 287 (292)
T 4hl4_A 213 GHVLSDFRHVVRLYDFFLACHP---LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFV 287 (292)
T ss_dssp TTTSCCHHHHHHHHHHHHHSCT---THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 47885 9999999999999986 799999999999999999985 79999999999995 899999999999874
No 6
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.52 E-value=7.5e-15 Score=99.58 Aligned_cols=70 Identities=24% Similarity=0.371 Sum_probs=63.7
Q ss_pred CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhccCHHHHHHHHh-CCCC-----CCHHHHHHHHHhhh
Q 035017 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAGDITSNLKLLQ-NYPP-----TNISHLLYVANKLR 73 (76)
Q Consensus 1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq-~~p~-----~dv~~ll~~A~~l~ 73 (76)
+++||+++++|+||++|+++. .++.++|+|++...|++|++.||++++++|+ ++|. .|++.+++.|..++
T Consensus 200 ~~~lp~~~~~riwD~~l~~g~---~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~lp~~~~~~~d~~~ll~~A~~l~ 275 (310)
T 3hzj_A 200 TAKFPLCMVFHIIDLLLCEGL---NIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRLMEQACNIK 275 (310)
T ss_dssp TTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHHHHTTCSHHHHHHHHHHHHHSC
T ss_pred hccCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCcccccccccHHHHHHHHHhcC
Confidence 589999999999999999986 7899999999999999999999999999997 4563 38999999999885
No 7
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=99.52 E-value=2.3e-14 Score=97.85 Aligned_cols=70 Identities=10% Similarity=0.213 Sum_probs=63.4
Q ss_pred CcccchhcHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHhCCCC-C---CHHHHHHHHHhhh
Q 035017 1 MQEFNFADNLHIWDTLLSDPDGPQETQLRVCCVMLILIRRRLLAG-DITSNLKLLQNYPP-T---NISHLLYVANKLR 73 (76)
Q Consensus 1 ~rEf~l~~~~~lWD~l~a~~~~~~~~~~~i~~A~L~~~r~~Ll~~-df~~~l~~Lq~~p~-~---dv~~ll~~A~~l~ 73 (76)
+++||+++++|+||++|+++. .++.++|+|++...|++|++. ||++++++|+++|+ . |++.+++.|..++
T Consensus 234 ~~~lp~~~~lrlwD~~l~~g~---~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 234 ASQFPLGFVARVFDMIFLQGT---EVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp TTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCC
T ss_pred hhhCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCC
Confidence 479999999999999999986 699999999999999999986 89999999999544 4 7999999998775
No 8
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=81.15 E-value=3.1 Score=26.29 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhCCCCCC---HHHHHHHHHh
Q 035017 33 VMLILIRRRLLAGDITSNLKLLQNYPPTN---ISHLLYVANK 71 (76)
Q Consensus 33 A~L~~~r~~Ll~~df~~~l~~Lq~~p~~d---v~~ll~~A~~ 71 (76)
-.+..+|+.|++++=+..=.++..||..| +..+++.|.+
T Consensus 106 h~lE~wRdrLi~~gd~al~e~~~~~P~~DrQ~LRqLiR~A~k 147 (176)
T 2p0t_A 106 HNLERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQH 147 (176)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHCchhhHHHHHHHHHHHHH
Confidence 45889999999876556666788999987 5566766654
No 9
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=59.52 E-value=24 Score=20.68 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhc-cCHHHHHHHHhCCCCCCHHHHHHHHH
Q 035017 31 CCVMLILIRRRLLA-GDITSNLKLLQNYPPTNISHLLYVAN 70 (76)
Q Consensus 31 ~~A~L~~~r~~Ll~-~df~~~l~~Lq~~p~~dv~~ll~~A~ 70 (76)
||+|+... .|++ ++|.+++.+++..|..|+++.+..+.
T Consensus 41 ~v~lIR~s--SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce 79 (116)
T 2p58_C 41 AVQLIRLS--SLMNRGDYASALQQGNKLAYPDLEPWLALCE 79 (116)
T ss_dssp HHHHHHHH--HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH
T ss_pred HHHHHHHH--HHHcchhHHHHHHhcCCCCCchHHHHHHHHH
Confidence 55555443 3554 68999999999999999999887664
No 10
>1ccw_B Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.1.19.2 PDB: 1cb7_B* 1i9c_B*
Probab=55.46 E-value=22 Score=25.71 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=30.4
Q ss_pred HHHHHHHHhcc-------CHHHHHHHHhCCCC-CCHHHHHHHHHh
Q 035017 35 LILIRRRLLAG-------DITSNLKLLQNYPP-TNISHLLYVANK 71 (76)
Q Consensus 35 L~~~r~~Ll~~-------df~~~l~~Lq~~p~-~dv~~ll~~A~~ 71 (76)
+.+.|.++++. ||.+++.++++.|. .+....+..|..
T Consensus 13 ~~~~r~~~l~~~~~~~~~d~~e~v~y~~~~~~~k~f~~~l~~~~~ 57 (483)
T 1ccw_B 13 FHKQREEVLQQWPTGKEVDLQEAVDYLKKIPAEKNFAEKLVLAKK 57 (483)
T ss_dssp HHHHHHHHGGGSGGGGGCCHHHHHHHHHTSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCccccCHHHHHHHHhcCCcccchHHHHHHHHH
Confidence 45788888886 89999999999998 577777777664
No 11
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=53.42 E-value=24 Score=20.70 Aligned_cols=38 Identities=11% Similarity=0.197 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhc-cCHHHHHHHHhCCCCCCHHHHHHHHH
Q 035017 31 CCVMLILIRRRLLA-GDITSNLKLLQNYPPTNISHLLYVAN 70 (76)
Q Consensus 31 ~~A~L~~~r~~Ll~-~df~~~l~~Lq~~p~~dv~~ll~~A~ 70 (76)
||+|+... .|++ ++|.+.+.+++..|..|+++.+..+.
T Consensus 40 ~v~lIR~s--SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce 78 (115)
T 2uwj_G 40 AARLIRIS--SLANQGRYQEALAFAHGNPWPALEPWFALCE 78 (115)
T ss_dssp HHHHHHHH--HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH
T ss_pred HHHHHHHH--HHHcchhHHHHHHhcCCCCCchHHHHHHHHH
Confidence 55555443 3554 68999999999999999999877664
No 12
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=36.00 E-value=29 Score=22.06 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=20.9
Q ss_pred HHHHHHhccCHHHHHHHHhC----------CCCCCHHHHHHHHHhhhhcC
Q 035017 37 LIRRRLLAGDITSNLKLLQN----------YPPTNISHLLYVANKLRNLG 76 (76)
Q Consensus 37 ~~r~~Ll~~df~~~l~~Lq~----------~p~~dv~~ll~~A~~l~~~~ 76 (76)
..++..-++|++.|-+.|.+ +|+..-..=+..|+.+.++|
T Consensus 13 ~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~ 62 (229)
T 4b0z_A 13 HLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYG 62 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH
Confidence 34444455566666666553 45432223335677776654
No 13
>2dla_A 397AA long hypothetical protein; helix bundle, twisted beta-sheet, replication; 2.90A {Pyrococcus horikoshii}
Probab=35.70 E-value=13 Score=24.02 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=25.1
Q ss_pred HHHhccCHHHHHHHHhCCCC-CCHHHHHHHHHh
Q 035017 40 RRLLAGDITSNLKLLQNYPP-TNISHLLYVANK 71 (76)
Q Consensus 40 ~~Ll~~df~~~l~~Lq~~p~-~dv~~ll~~A~~ 71 (76)
.+|+ .+|+++-.+|+.+|. .|++.+++.-.-
T Consensus 13 k~Ll-keFG~in~fLe~IP~~vdveevieRVkw 44 (222)
T 2dla_A 13 KELL-KGFGSINDFMDAIPKIVSVDDVIERIRV 44 (222)
T ss_dssp HHHT-TTTSSHHHHHHHGGGTCCHHHHHHHHGG
T ss_pred HHHH-HHhccHHHHHHHccccccHHHHHHHHHh
Confidence 3556 479999999999999 799999877543
No 14
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=33.15 E-value=51 Score=18.21 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=39.8
Q ss_pred HHHHHhcCCCC----CchHHHHHHHHHHHHHHHHHhccCHHHHHHHHhCCCC----CCHHHHHHHHHhh
Q 035017 12 IWDTLLSDPDG----PQETQLRVCCVMLILIRRRLLAGDITSNLKLLQNYPP----TNISHLLYVANKL 72 (76)
Q Consensus 12 lWD~l~a~~~~----~~~~~~~i~~A~L~~~r~~Ll~~df~~~l~~Lq~~p~----~dv~~ll~~A~~l 72 (76)
+|..+|-...+ ...=++=+++|+....|...-..-+......|.++|+ +|++.++..+...
T Consensus 23 vlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~a~~ll~~a~~~L~~~~~~~~gidv~~L~~~~~~~ 91 (94)
T 2cwy_A 23 VLEPYWLKATGEERRLLQGVILLAAALHQRRLGRPGLRNLRKAEARLEGLPCPLMGLDWRSLLQEARRR 91 (94)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCSSBTTBCHHHHHHHHHHH
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHH
Confidence 45555554321 2234456778887766665522237889999999996 5999998877654
No 15
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=30.67 E-value=1.2e+02 Score=20.53 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhc-----cCHHHHHHHHhCC-----CCC---CHHHHHHHHHhhhhcC
Q 035017 31 CCVMLILIRRRLLA-----GDITSNLKLLQNY-----PPT---NISHLLYVANKLRNLG 76 (76)
Q Consensus 31 ~~A~L~~~r~~Ll~-----~df~~~l~~Lq~~-----p~~---dv~~ll~~A~~l~~~~ 76 (76)
.++-....|.+-.+ +.-.+++..|+++ |.. ++..+++.|..+|+-|
T Consensus 56 Tvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~ 114 (289)
T 2huo_A 56 TVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAH 114 (289)
T ss_dssp CHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCSSCTTCCSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCccchhHHHHHHHHHHHHHHhC
Confidence 34555666666555 4678999999998 332 5899999999999743
No 16
>2vy8_A Polymerase basic protein 2; viral protein, transcription, mRNA capping, mitochondrion, mRNA processing; 1.2A {Influenza a virus} PDB: 2vy7_A*
Probab=29.52 E-value=70 Score=19.32 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHH
Q 035017 28 LRVCCVMLILIRRRLLAGDITSNLKLL 54 (76)
Q Consensus 28 ~~i~~A~L~~~r~~Ll~~df~~~l~~L 54 (76)
.-++=+++.++|++|--.|-++.+++|
T Consensus 57 sgf~r~~~~qmrd~~~~~~t~q~ikLl 83 (157)
T 2vy8_A 57 SGFVRTLFQQMRDVLGTFDTTQIIKLL 83 (157)
T ss_dssp HHHHHHHHHHHHHHHCC-CHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHhc
Confidence 446789999999999888888999887
No 17
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=26.97 E-value=13 Score=16.94 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=11.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHH
Q 035017 48 TSNLKLLQNYPPTNISHLLYV 68 (76)
Q Consensus 48 ~~~l~~Lq~~p~~dv~~ll~~ 68 (76)
++|.++|+ |...-+.+.+.
T Consensus 1 seC~~~l~--~~~~~~e~FeR 19 (31)
T 1bl1_A 1 SEAVKFLT--NETREREVFDR 19 (31)
T ss_dssp CHHHHHHH--HSCCHHHHHHS
T ss_pred CcchhhcC--CccchHHHHhh
Confidence 47888888 45555554443
No 18
>1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A
Probab=25.81 E-value=20 Score=16.26 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=11.7
Q ss_pred CHHHHHHHHHhhhhc
Q 035017 61 NISHLLYVANKLRNL 75 (76)
Q Consensus 61 dv~~ll~~A~~l~~~ 75 (76)
+|+.+|++|.+...+
T Consensus 8 QV~~LI~~At~~~NL 22 (33)
T 1w1n_A 8 QVDKLIQQATSIERL 22 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHH
Confidence 688999999876554
No 19
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=23.97 E-value=69 Score=17.01 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhccC-HHHHHHHHhCCCC--CCHHHHHHHHHhh
Q 035017 31 CCVMLILIRRRLLAGD-ITSNLKLLQNYPP--TNISHLLYVANKL 72 (76)
Q Consensus 31 ~~A~L~~~r~~Ll~~d-f~~~l~~Lq~~p~--~dv~~ll~~A~~l 72 (76)
..+.+.++|..+-+.+ |.+-+++|.-|.. +|-..+++.+..+
T Consensus 11 e~~Ff~kVK~~l~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~ 55 (75)
T 2ld7_B 11 ESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPF 55 (75)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCcCHHHHHHHHHHH
Confidence 4566778888874433 7888888877765 6888888776544
No 20
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.81 E-value=1.5e+02 Score=18.13 Aligned_cols=61 Identities=3% Similarity=-0.030 Sum_probs=37.9
Q ss_pred HHHHHhcCCCCC------chHHHH-HHHHHHHHHHHHHhc--cCHHHHHHHHhCCCC----CCHHHHHHHHHhh
Q 035017 12 IWDTLLSDPDGP------QETQLR-VCCVMLILIRRRLLA--GDITSNLKLLQNYPP----TNISHLLYVANKL 72 (76)
Q Consensus 12 lWD~l~a~~~~~------~~~~~~-i~~A~L~~~r~~Ll~--~df~~~l~~Lq~~p~----~dv~~ll~~A~~l 72 (76)
+|..+|-...+. .+=++- +++|+...-|...-. .-+...+..|.++|+ +|++.++..+...
T Consensus 54 vLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GIDv~~L~~~~~~~ 127 (161)
T 2ijq_A 54 CFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGVDLLDVRTTVTNA 127 (161)
T ss_dssp HHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGBCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHH
Confidence 456666543211 223344 666666655554432 236788999999986 4999998877654
No 21
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=21.47 E-value=77 Score=20.92 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Q 035017 47 ITSNLKLLQNYPPTNISHLLYVAN 70 (76)
Q Consensus 47 f~~~l~~Lq~~p~~dv~~ll~~A~ 70 (76)
+..++.+++++||.+++.-+..-.
T Consensus 6 ~d~aLdL~RRLpP~~ie~nl~~l~ 29 (244)
T 3aa0_B 6 LDCALDLMRRLPPQQIEKNLSDLI 29 (244)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 778999999999987666554433
Done!