BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035018
         (76 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8R034|APC13_MOUSE Anaphase-promoting complex subunit 13 OS=Mus musculus GN=Anapc13
          PE=2 SV=1
          Length = 74

 Score = 34.3 bits (77), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 7  GILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM-GTHET 65
          G ++D++D+ W  D LP +D+ +P   +  P+       E  +  E  W DLA+ G HE 
Sbjct: 9  GRILDLIDDAWREDKLPYEDVAIPLSELPEPEQDNGGTTESVKEQEMKWTDLALQGLHEN 68

Query: 66 L 66
          +
Sbjct: 69 V 69


>sp|Q28IW8|APC13_XENTR Anaphase-promoting complex subunit 13 OS=Xenopus tropicalis
          GN=anapc13 PE=3 SV=1
          Length = 74

 Score = 32.3 bits (72), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 4  LSQGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM 60
          L  G ++D++D+ W  D LP +D+ +P   +  P+       E  +  E  W DLA+
Sbjct: 6  LRDGRILDLIDDAWREDKLPYEDVTIPLNELPEPEQDNGGATESVKEQEMKWADLAL 62


>sp|Q9BS18|APC13_HUMAN Anaphase-promoting complex subunit 13 OS=Homo sapiens GN=ANAPC13
          PE=1 SV=1
          Length = 74

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 7  GILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM 60
          G ++D++D+ W  D LP +D+ +P   +  P+       E  +  E  W DLA+
Sbjct: 9  GRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEMKWTDLAL 62


>sp|Q2NKV2|APC13_BOVIN Anaphase-promoting complex subunit 13 OS=Bos taurus GN=ANAPC13
          PE=3 SV=1
          Length = 74

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 7  GILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNEDTWHDLAM 60
          G ++D++D+ W  D LP +D+ +P   +  P+       E  +  E  W DLA+
Sbjct: 9  GRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEMKWTDLAL 62


>sp|Q5RBV4|APC13_PONAB Anaphase-promoting complex subunit 13 OS=Pongo abelii GN=ANAPC13
          PE=3 SV=1
          Length = 74

 Score = 30.8 bits (68), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 7  GILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQVNED--TWHDLAM 60
          G ++D++D+ W  D LP +D+ +P  L   PD  +D+    + V E    W DLA+
Sbjct: 9  GRILDLIDDAWREDKLPYEDVAIP--LNELPDPEQDNGGTTESVKEQEMKWTDLAL 62


>sp|Q8NWZ5|ISPT_STAAW Isoprenyl transferase OS=Staphylococcus aureus (strain MW2) GN=uppS
           PE=3 SV=1
          Length = 256

 Score = 28.9 bits (63), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 6   QGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQV-------NEDTWHDL 58
           QG+  DI+DE ++ + L   D P P +L+    +   SN    QV       N+  W D 
Sbjct: 172 QGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDF 231

Query: 59  AMGTHETLECIVLH 72
                E ++CI ++
Sbjct: 232 --DEDELIKCIKIY 243


>sp|Q6G9V3|ISPT_STAAS Isoprenyl transferase OS=Staphylococcus aureus (strain MSSA476)
           GN=uppS PE=3 SV=1
          Length = 256

 Score = 28.9 bits (63), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 6   QGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQV-------NEDTWHDL 58
           QG+  DI+DE ++ + L   D P P +L+    +   SN    QV       N+  W D 
Sbjct: 172 QGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDF 231

Query: 59  AMGTHETLECIVLH 72
                E ++CI ++
Sbjct: 232 --DEDELIKCIKIY 243


>sp|Q6GHH5|ISPT_STAAR Isoprenyl transferase OS=Staphylococcus aureus (strain MRSA252)
           GN=uppS PE=3 SV=1
          Length = 256

 Score = 28.9 bits (63), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 6   QGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQV-------NEDTWHDL 58
           QG+  DI+DE ++ + L   D P P +L+    +   SN    QV       N+  W D 
Sbjct: 172 QGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDF 231

Query: 59  AMGTHETLECIVLH 72
                E ++CI ++
Sbjct: 232 --DEDELIKCIKIY 243


>sp|P60477|ISPT_STAAN Isoprenyl transferase OS=Staphylococcus aureus (strain N315)
           GN=uppS PE=1 SV=1
          Length = 256

 Score = 28.9 bits (63), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 6   QGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQV-------NEDTWHDL 58
           QG+  DI+DE ++ + L   D P P +L+    +   SN    QV       N+  W D 
Sbjct: 172 QGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDF 231

Query: 59  AMGTHETLECIVLH 72
                E ++CI ++
Sbjct: 232 --DEDELIKCIKIY 243


>sp|P60476|ISPT_STAAM Isoprenyl transferase OS=Staphylococcus aureus (strain Mu50 / ATCC
           700699) GN=uppS PE=3 SV=1
          Length = 256

 Score = 28.9 bits (63), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 6   QGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQV-------NEDTWHDL 58
           QG+  DI+DE ++ + L   D P P +L+    +   SN    QV       N+  W D 
Sbjct: 172 QGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDF 231

Query: 59  AMGTHETLECIVLH 72
                E ++CI ++
Sbjct: 232 --DEDELIKCIKIY 243


>sp|Q5HGH1|ISPT_STAAC Isoprenyl transferase OS=Staphylococcus aureus (strain COL) GN=uppS
           PE=3 SV=1
          Length = 256

 Score = 28.9 bits (63), Expect = 9.8,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 6   QGILIDIVDEEWMRDTLPDDDLPLPPVLVVRPDDTEDSNQEPQQV-------NEDTWHDL 58
           QG+  DI+DE ++ + L   D P P +L+    +   SN    QV       N+  W D 
Sbjct: 172 QGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDF 231

Query: 59  AMGTHETLECIVLH 72
                E ++CI ++
Sbjct: 232 --DEDELIKCIKIY 243


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,149,320
Number of Sequences: 539616
Number of extensions: 1206645
Number of successful extensions: 2071
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2065
Number of HSP's gapped (non-prelim): 14
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)