Query 035018
Match_columns 76
No_of_seqs 50 out of 52
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 13:56:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fly_A Proadrenomedullin N-20 11.9 32 0.0011 17.6 -0.7 16 50-65 8-23 (26)
2 2cg5_B Fatty acid synthase; tr 10.1 48 0.0016 20.3 -0.5 17 52-68 30-46 (91)
3 4go6_B HCF C-terminal chain 1; 10.1 1.2E+02 0.0042 19.7 1.6 24 50-75 4-27 (232)
4 2d8m_A DNA-repair protein XRCC 8.3 2.7E+02 0.0093 17.0 2.6 26 10-35 81-112 (129)
5 1skh_A Major prion protein 2; 7.9 69 0.0023 16.8 -0.3 8 54-61 17-24 (30)
6 1rrp_B Nuclear pore complex pr 7.6 1.4E+02 0.0048 19.0 1.0 16 51-66 37-52 (134)
7 2k84_A P9; HOST-virus interact 7.2 1.8E+02 0.006 15.1 1.1 14 49-63 15-28 (30)
8 2rno_A Putative DNA-binding pr 6.3 89 0.0031 20.6 -0.5 13 9-21 73-85 (110)
9 3njn_A Peptidase; structural g 5.9 2.1E+02 0.0072 19.0 1.2 12 5-16 83-94 (119)
10 2kt5_A RNA and export factor-b 5.8 1.6E+02 0.0054 17.2 0.5 26 1-26 1-26 (124)
No 1
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=11.87 E-value=32 Score=17.55 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=12.2
Q ss_pred cCcccccccccccccc
Q 035018 50 VNEDTWHDLAMGTHET 65 (76)
Q Consensus 50 ~qe~kW~DLAL~~l~~ 65 (76)
+-..||+-+||+....
T Consensus 8 efrKKwn~w~lsR~kR 23 (26)
T 2fly_A 8 EFRKKWNKWALSRXXX 23 (26)
T ss_pred HHHHHHHHHHHhcccc
Confidence 4457999999987653
No 2
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=10.11 E-value=48 Score=20.25 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=13.6
Q ss_pred cccccccccccccccee
Q 035018 52 EDTWHDLAMGTHETLEC 68 (76)
Q Consensus 52 e~kW~DLAL~~l~~~~~ 68 (76)
+....|||+.|||..|.
T Consensus 30 ~~~l~dLG~DSL~aVEL 46 (91)
T 2cg5_B 30 DSSLADLGLDALMSVEV 46 (91)
T ss_dssp TSBTTTTTCCHHHHHHH
T ss_pred CCCHHHhCCcchHHHHH
Confidence 34568999999998874
No 3
>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=10.09 E-value=1.2e+02 Score=19.69 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=14.6
Q ss_pred cCccccccccccccccceeEEEeeee
Q 035018 50 VNEDTWHDLAMGTHETLECIVLHFEL 75 (76)
Q Consensus 50 ~qe~kW~DLAL~~l~~~~~~~~~~~~ 75 (76)
+.|..|.|.|. ...--++|-||.+
T Consensus 4 ~~~~qW~dvgv--~~~~~~~Vt~Y~~ 27 (232)
T 4go6_B 4 KKENQWFDVGV--IKGTNVMVTHYFL 27 (232)
T ss_dssp ----CCEEEEE--ESSSEEEECEEEC
T ss_pred ccCCEeecCCE--ecCCCEEEEEEEE
Confidence 57889999874 4556677878765
No 4
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.32 E-value=2.7e+02 Score=17.04 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=16.9
Q ss_pred EEeechhhhhc------CCCCCCCCCCCCCcC
Q 035018 10 IDIVDEEWMRD------TLPDDDLPLPPVLVV 35 (76)
Q Consensus 10 iDIVDe~W~~D------tLP~DdI~vP~~~~p 35 (76)
|-||..+|-.| .||-+...++.....
T Consensus 81 i~IV~~~Wl~d~~~~~~~l~e~~Y~l~~~~~~ 112 (129)
T 2d8m_A 81 GRIVRKEWVLDCHRMRRRLPSQRYLMAGPGSS 112 (129)
T ss_dssp CEEEETHHHHHHHHTTSCCCGGGGBCSSSSCC
T ss_pred CcEecHHHHHHHHHhCCcCChHhcccCCCCcC
Confidence 56899999654 567676655544443
No 5
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=7.87 E-value=69 Score=16.76 Aligned_cols=8 Identities=25% Similarity=0.883 Sum_probs=6.0
Q ss_pred cccccccc
Q 035018 54 TWHDLAMG 61 (76)
Q Consensus 54 kW~DLAL~ 61 (76)
.|.|+||.
T Consensus 17 ~wsdvglc 24 (30)
T 1skh_A 17 MWSDVGLC 24 (30)
T ss_dssp HHHHHTTS
T ss_pred HHhHHHHh
Confidence 58888874
No 6
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=7.61 E-value=1.4e+02 Score=19.02 Aligned_cols=16 Identities=19% Similarity=0.615 Sum_probs=12.3
Q ss_pred Cccccccccccccccc
Q 035018 51 NEDTWHDLAMGTHETL 66 (76)
Q Consensus 51 qe~kW~DLAL~~l~~~ 66 (76)
....|++-|.|.+.=|
T Consensus 37 ~~~~WkerG~G~lkil 52 (134)
T 1rrp_B 37 ESKEWKERGIGNVKIL 52 (134)
T ss_dssp SSSCEEEEEEEEEEEE
T ss_pred cCCCcccCcEEEEEEE
Confidence 3567999999987744
No 7
>2k84_A P9; HOST-virus interaction, metal-binding, virion, zinc, zinc-finger; NMR {Synthetic}
Probab=7.24 E-value=1.8e+02 Score=15.14 Aligned_cols=14 Identities=14% Similarity=0.366 Sum_probs=9.4
Q ss_pred ccCcccccccccccc
Q 035018 49 QVNEDTWHDLAMGTH 63 (76)
Q Consensus 49 k~qe~kW~DLAL~~l 63 (76)
+++++. .||.|++|
T Consensus 15 ~~~~q~-eDLNL~SL 28 (30)
T 2k84_A 15 KEKDQV-EDLNLDSL 28 (30)
T ss_dssp TTTTTT-GGGTTTSS
T ss_pred Hhhhhh-hccchhhc
Confidence 344444 89998886
No 8
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=6.32 E-value=89 Score=20.63 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=8.7
Q ss_pred EEEeechhhhhcC
Q 035018 9 LIDIVDEEWMRDT 21 (76)
Q Consensus 9 LiDIVDe~W~~Dt 21 (76)
++=||||.||+=.
T Consensus 73 vaKIVDDtYRKMq 85 (110)
T 2rno_A 73 VAKIVDDTYRKMQ 85 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3457888887643
No 9
>3njn_A Peptidase; structural genomics, autocatalysis, PSI- protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 1.25A {Shewanella oneidensis} PDB: 3n55_A 2ai4_A 3njm_A 3nji_A 3njf_A 3njg_A 3njk_A 3njl_A 3njj_A 3njh_A
Probab=5.93 E-value=2.1e+02 Score=19.01 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=9.9
Q ss_pred cCCcEEEeechh
Q 035018 5 SQGILIDIVDEE 16 (76)
Q Consensus 5 ~dGrLiDIVDe~ 16 (76)
.+|++|.+||.+
T Consensus 83 ~dG~~i~lvD~D 94 (119)
T 3njn_A 83 SDGMLVQLVDLD 94 (119)
T ss_dssp TTSSEEEEEECC
T ss_pred CCCcEEEEEEcC
Confidence 689999999853
No 10
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=5.82 E-value=1.6e+02 Score=17.23 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=20.8
Q ss_pred CCcccCCcEEEeechhhhhcCCCCCC
Q 035018 1 MAELSQGILIDIVDEEWMRDTLPDDD 26 (76)
Q Consensus 1 ~~~l~dGrLiDIVDe~W~~DtLP~Dd 26 (76)
||.+..|.-+--+...|..+..+...
T Consensus 1 mas~~~g~~~~~~~~~~~~~~~~~~~ 26 (124)
T 2kt5_A 1 MASMTGGQQMGRDPDKWQHDLFDSGC 26 (124)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred CccccCcccccCCCccccccccccCC
Confidence 88899998888888899888766544
Done!