Query 035018
Match_columns 76
No_of_seqs 50 out of 52
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 13:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035018.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035018hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k5db_ b.55.1.3 (B:) Ran-bind 25.4 20 0.0015 21.7 2.3 14 53-66 44-57 (146)
2 d1rrpb_ b.55.1.3 (B:) Nuclear 18.5 22 0.0016 21.0 1.3 17 51-67 37-53 (134)
3 d1ow0a2 b.1.1.2 (A:343-450) Im 13.1 45 0.0033 18.3 1.7 18 57-74 16-33 (108)
4 d2af8a_ a.28.1.1 (A:) Actinorh 11.6 16 0.0012 20.1 -0.7 18 51-68 31-48 (86)
5 d1fp5a1 b.1.1.2 (A:336-438) Im 10.2 51 0.0037 18.0 1.2 18 56-73 11-28 (103)
6 g2ai4.1 b.6.1.7 (A:6-116,B:117 10.1 50 0.0036 20.5 1.2 12 5-16 75-86 (119)
7 d1igyb3 b.1.1.2 (B:236-361) Im 8.2 55 0.004 18.3 0.8 16 58-73 26-41 (116)
8 d1hxmb2 b.1.1.2 (B:124-230) T- 8.0 1.1E+02 0.008 16.7 2.1 20 55-74 18-37 (107)
9 d1ogae2 b.1.1.2 (E:119-245) T- 6.9 69 0.005 18.1 0.8 18 57-74 16-33 (127)
10 d1vkua_ a.28.1.1 (A:) Acyl car 6.3 41 0.003 17.7 -0.5 17 51-67 30-46 (85)
No 1
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.39 E-value=20 Score=21.71 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.1
Q ss_pred cccccccccccccc
Q 035018 53 DTWHDLAMGTHETL 66 (76)
Q Consensus 53 ~kW~DLAL~~l~~~ 66 (76)
..|++.|.|.+.=|
T Consensus 44 ~~WkerGvG~lkil 57 (146)
T d1k5db_ 44 PEWKERGTGDVKLL 57 (146)
T ss_dssp CCEEEEEEEEEEEE
T ss_pred CCccceeEEEEEEE
Confidence 45999999988644
No 2
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.46 E-value=22 Score=21.05 Aligned_cols=17 Identities=18% Similarity=0.587 Sum_probs=12.9
Q ss_pred Cccccccccccccccce
Q 035018 51 NEDTWHDLAMGTHETLE 67 (76)
Q Consensus 51 qe~kW~DLAL~~l~~~~ 67 (76)
...+|++-|.|.|.=|.
T Consensus 37 ~~~~WkerGvG~lkil~ 53 (134)
T d1rrpb_ 37 ESKEWKERGIGNVKILR 53 (134)
T ss_dssp SSSCEEEEEEEEEEEEE
T ss_pred CCCceeeeeEEEEEEEE
Confidence 45689999999875443
No 3
>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.09 E-value=45 Score=18.27 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=13.0
Q ss_pred cccccccccceeEEEeee
Q 035018 57 DLAMGTHETLECIVLHFE 74 (76)
Q Consensus 57 DLAL~~l~~~~~~~~~~~ 74 (76)
++..+.-.+|.|++..|-
T Consensus 16 e~~~~~~~tl~C~~~~f~ 33 (108)
T d1ow0a2 16 ELALNELVTLTCLARGFS 33 (108)
T ss_dssp TTTSSSEEEEEEEEEEES
T ss_pred HhccCCceEEEEEEEEeE
Confidence 344555668999999883
No 4
>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]}
Probab=11.62 E-value=16 Score=20.07 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=14.6
Q ss_pred Ccccccccccccccccee
Q 035018 51 NEDTWHDLAMGTHETLEC 68 (76)
Q Consensus 51 qe~kW~DLAL~~l~~~~~ 68 (76)
-+..|.|||+.|++.++.
T Consensus 31 ~d~~f~dlG~DSl~~~~l 48 (86)
T d2af8a_ 31 LDLRFEDIGYDSLALMET 48 (86)
T ss_dssp CSSSHHHHTCSSHHHHHH
T ss_pred cCCCHHHcCCCHHHHHHH
Confidence 446799999999988764
No 5
>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.15 E-value=51 Score=17.99 Aligned_cols=18 Identities=28% Similarity=0.635 Sum_probs=14.3
Q ss_pred ccccccccccceeEEEee
Q 035018 56 HDLAMGTHETLECIVLHF 73 (76)
Q Consensus 56 ~DLAL~~l~~~~~~~~~~ 73 (76)
.||.++.-.+|-|.|-.|
T Consensus 11 ~~l~~~~~~tL~C~v~gf 28 (103)
T d1fp5a1 11 FDLFIRKSPTITCLVVDL 28 (103)
T ss_dssp HHHHTTCCCEEEEEEEES
T ss_pred HHHhhCCCeEEEEEEEee
Confidence 467777788999999766
No 6
>g2ai4.1 b.6.1.7 (A:6-116,B:117-124) Hypothetical protein SO1698 {Shewanella oneidensis [TaxId: 70863]}
Probab=10.08 E-value=50 Score=20.48 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=10.0
Q ss_pred cCCcEEEeechh
Q 035018 5 SQGILIDIVDEE 16 (76)
Q Consensus 5 ~dGrLiDIVDe~ 16 (76)
++|++|.|||.+
T Consensus 75 ~dG~~i~LvD~D 86 (119)
T g2ai4.1 75 SDGMLVQLVDLD 86 (119)
T ss_dssp TTSSEEEEEECS
T ss_pred CCceEEEEEecC
Confidence 689999999853
No 7
>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.21 E-value=55 Score=18.27 Aligned_cols=16 Identities=19% Similarity=0.551 Sum_probs=13.6
Q ss_pred ccccccccceeEEEee
Q 035018 58 LAMGTHETLECIVLHF 73 (76)
Q Consensus 58 LAL~~l~~~~~~~~~~ 73 (76)
|.++.-.+|.|+|-.|
T Consensus 26 l~~~~~~tL~C~v~gf 41 (116)
T d1igyb3 26 LLITVTPKVTCVVVDI 41 (116)
T ss_dssp HSTTSCCEEEEEECCC
T ss_pred cccCCCcEEEEEEecE
Confidence 6678889999999877
No 8
>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}
Probab=8.00 E-value=1.1e+02 Score=16.66 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=14.3
Q ss_pred cccccccccccceeEEEeee
Q 035018 55 WHDLAMGTHETLECIVLHFE 74 (76)
Q Consensus 55 W~DLAL~~l~~~~~~~~~~~ 74 (76)
-.++..+.-.+|-|.+..|-
T Consensus 18 ~~e~~~~~~~~l~Clv~~f~ 37 (107)
T d1hxmb2 18 IAETKLQKAGTYLCLLEKFF 37 (107)
T ss_dssp GGGGGSSSCEEEEEEEEEES
T ss_pred HHHHccCCcEEEEEEEeEEe
Confidence 34555666778999998883
No 9
>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}
Probab=6.89 E-value=69 Score=18.12 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=14.0
Q ss_pred cccccccccceeEEEeee
Q 035018 57 DLAMGTHETLECIVLHFE 74 (76)
Q Consensus 57 DLAL~~l~~~~~~~~~~~ 74 (76)
++..+.-.+|-|.+-.|-
T Consensus 16 e~~~~~~~tL~C~v~gf~ 33 (127)
T d1ogae2 16 EISHTQKATLVCLATGFY 33 (127)
T ss_dssp HHHHHSEEEEEEEEEEEB
T ss_pred HhccCCcEEEEEEEEecc
Confidence 455667778999999984
No 10
>d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]}
Probab=6.34 E-value=41 Score=17.68 Aligned_cols=17 Identities=18% Similarity=0.585 Sum_probs=12.8
Q ss_pred Cccccccccccccccce
Q 035018 51 NEDTWHDLAMGTHETLE 67 (76)
Q Consensus 51 qe~kW~DLAL~~l~~~~ 67 (76)
.+..+.|||+.|++.++
T Consensus 30 ~~~~~~dlG~DSl~~v~ 46 (85)
T d1vkua_ 30 EENTFKELGFDSIDVID 46 (85)
T ss_dssp TTSBTTTTTCCHHHHHH
T ss_pred CCCCHHHhcCcchHHHH
Confidence 34567899999988765
Done!