BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035020
         (76 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O68575|PFLA_STRMU Pyruvate formate-lyase-activating enzyme OS=Streptococcus mutans
           serotype c (strain ATCC 700610 / UA159) GN=act PE=3 SV=1
          Length = 263

 Score = 31.6 bits (70), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 28/90 (31%)

Query: 6   TSKGILEIAKFGIYVGVPVFLMYT-----------------FANNTKNIQKF-------M 41
           ++K IL  A++   +G PV++ +                  +    KN+Q+F       M
Sbjct: 158 SNKTILACARYLSDIGKPVWIRHVLVPGLTDRDEDLIKLGEYVKTLKNVQRFEILPYHTM 217

Query: 42  GNRSYVE----YPPEGPRPPSPEELREMAR 67
           G   + E    YP EG +PP+P+ +R   +
Sbjct: 218 GEFKWRELGIPYPLEGVKPPTPDRVRNAKK 247


>sp|C0QAX9|FTHS_DESAH Formate--tetrahydrofolate ligase OS=Desulfobacterium autotrophicum
           (strain ATCC 43914 / DSM 3382 / HRM2) GN=fhs PE=3 SV=1
          Length = 591

 Score = 29.6 bits (65), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 5   GTSKGILEIAKFGIYVGVPVFLMYTFANNTKNIQKFMGNRSYVEYPPEGPRPPSPEELR 63
           G S G +  +KFGI V   V  +   A + K++++ MG +  V Y  +G +P + E+L+
Sbjct: 209 GKSDGYMMKSKFGIAVSSEVMAILAVAKDLKDMRERMG-KIVVAYTKKG-KPVTTEDLQ 265


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.137    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,744,439
Number of Sequences: 539616
Number of extensions: 1156812
Number of successful extensions: 4378
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4376
Number of HSP's gapped (non-prelim): 5
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)