Query 035020
Match_columns 76
No_of_seqs 96 out of 98
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 13:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fur_A Urease subunit gamma 2; 35.4 26 0.00088 22.7 2.5 21 56-76 6-30 (104)
2 1ysp_A Transcriptional regulat 34.3 32 0.0011 21.9 2.9 39 32-75 71-109 (181)
3 3csx_A Putative uncharacterize 32.0 10 0.00035 23.5 0.1 19 56-74 11-29 (81)
4 2o99_A Acetate operon represso 31.9 32 0.0011 22.0 2.5 39 32-75 75-113 (182)
5 1use_A VAsp, vasodilator-stimu 30.2 29 0.001 19.3 1.8 13 62-74 17-29 (45)
6 3r4h_A Coiled coil helix CC-TE 27.3 41 0.0014 17.5 2.0 13 60-72 9-21 (34)
7 2lqt_A Coiled-coil-helix-coile 27.0 37 0.0013 21.1 2.1 16 56-71 67-82 (85)
8 1ysq_A HTH-type transcriptiona 25.2 55 0.0019 21.1 2.8 39 32-75 77-117 (193)
9 2doh_C Fragment, plasminogen-b 23.6 23 0.00079 18.2 0.5 10 67-76 8-17 (30)
10 1t6f_A Geminin; coiled-coil, c 23.6 56 0.0019 17.5 2.1 18 58-75 12-29 (37)
11 1tf1_A Negative regulator of a 23.5 40 0.0014 22.0 1.8 39 32-75 91-129 (198)
12 3fbl_A Putative uncharacterize 23.3 24 0.00082 21.5 0.7 11 14-24 20-30 (82)
13 2yy0_A C-MYC-binding protein; 23.3 58 0.002 18.1 2.3 19 57-75 16-34 (53)
14 1mkm_A ICLR transcriptional re 22.6 51 0.0018 22.3 2.3 39 32-75 146-184 (249)
15 2o6l_A UDP-glucuronosyltransfe 22.4 99 0.0034 18.7 3.5 50 17-69 102-151 (170)
16 1bb1_B Designed, thermostable 22.4 50 0.0017 17.4 1.7 15 59-73 15-29 (36)
17 2qfa_C Inner centromere protei 21.7 53 0.0018 18.5 1.8 11 62-72 34-44 (47)
18 2cly_C ATP synthase coupling f 20.7 70 0.0024 19.5 2.4 21 54-74 29-49 (77)
No 1
>4fur_A Urease subunit gamma 2; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Brucella melitensis biovar abortus}
Probab=35.41 E-value=26 Score=22.67 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=17.2
Q ss_pred CCChHHHHHH----HHHHHHhhhcC
Q 035020 56 PPSPEELREM----ARELARNKNIR 76 (76)
Q Consensus 56 ~~~p~E~~ei----~~Elar~r~~r 76 (76)
+-.|.|++++ +++|||.|.+|
T Consensus 6 ~LtPrE~dkLli~~aa~lA~rR~~R 30 (104)
T 4fur_A 6 HLTPREFDKLVIHMLSDVALKRKNK 30 (104)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHc
Confidence 4568998876 89999999876
No 2
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Escherichia coli}
Probab=34.35 E-value=32 Score=21.91 Aligned_cols=39 Identities=3% Similarity=0.072 Sum_probs=26.0
Q ss_pred cCchhhhhhhcCcceeeCCCCCCCCCChHHHHHHHHHHHHhhhc
Q 035020 32 NNTKNIQKFMGNRSYVEYPPEGPRPPSPEELREMARELARNKNI 75 (76)
Q Consensus 32 ~~~d~~~~~~~~~~~~~~Ppe~~~~~~p~E~~ei~~Elar~r~~ 75 (76)
.+++.+..+.... +-+..++....+.+++.+||++.|++
T Consensus 71 ~~~~~~~~~l~~~-----~~~~~t~~t~~~~~~l~~~l~~iR~~ 109 (181)
T 1ysp_A 71 RDRDEVKQILEGV-----EYKRSTERTITSTEALLPVLDQVREQ 109 (181)
T ss_dssp SCHHHHHHHHTTC-----CCCCCSTTCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC-----CCcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 4566777777642 22333444467788999999999874
No 3
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=31.99 E-value=10 Score=23.54 Aligned_cols=19 Identities=16% Similarity=0.565 Sum_probs=10.6
Q ss_pred CCChHHHHHHHHHHHHhhh
Q 035020 56 PPSPEELREMARELARNKN 74 (76)
Q Consensus 56 ~~~p~E~~ei~~Elar~r~ 74 (76)
.+.|+|+++++.|+.+++.
T Consensus 11 ~~t~~di~eLkkevkKL~~ 29 (81)
T 3csx_A 11 NPTPEAVADLKKKVRKLNS 29 (81)
T ss_dssp -------CCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHH
Confidence 3447899999999998875
No 4
>2o99_A Acetate operon repressor; ICLR, DNA binding protein; HET: MSE; 1.70A {Escherichia coli} SCOP: d.110.2.2 PDB: 2o9a_A 1td5_A
Probab=31.94 E-value=32 Score=22.03 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=23.4
Q ss_pred cCchhhhhhhcCcceeeCCCCCCCCCChHHHHHHHHHHHHhhhc
Q 035020 32 NNTKNIQKFMGNRSYVEYPPEGPRPPSPEELREMARELARNKNI 75 (76)
Q Consensus 32 ~~~d~~~~~~~~~~~~~~Ppe~~~~~~p~E~~ei~~Elar~r~~ 75 (76)
.+++.+..+... .+-+..++....+..++.+||++.|++
T Consensus 75 ~~~~~~~~~l~~-----~~~~~~t~~t~~~~~~l~~~l~~iR~~ 113 (182)
T 2o99_A 75 LSEEQVTKLLHR-----KGLHAYTHATLVSPVHLKEDLAQTRKR 113 (182)
T ss_dssp SCHHHHHC---------CCCCCSSTTSCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhc-----CCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 455667777763 233333444567888999999999874
No 5
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=30.17 E-value=29 Score=19.33 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhh
Q 035020 62 LREMARELARNKN 74 (76)
Q Consensus 62 ~~ei~~Elar~r~ 74 (76)
++|+++|+..+|+
T Consensus 17 L~E~RkElqK~K~ 29 (45)
T 1use_A 17 LEEVKKELQKVKE 29 (45)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666777766664
No 6
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=27.31 E-value=41 Score=17.48 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 035020 60 EELREMARELARN 72 (76)
Q Consensus 60 ~E~~ei~~Elar~ 72 (76)
+|+..|+.||+.+
T Consensus 9 qelaaikkelaai 21 (34)
T 3r4h_A 9 QELAAIKKELAAI 21 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 7
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=27.00 E-value=37 Score=21.14 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.1
Q ss_pred CCChHHHHHHHHHHHH
Q 035020 56 PPSPEELREMARELAR 71 (76)
Q Consensus 56 ~~~p~E~~ei~~Elar 71 (76)
-|.++|+++|.+|+..
T Consensus 67 ~P~~~eR~~I~~~~~~ 82 (85)
T 2lqt_A 67 MPTAAERDEILRAVGN 82 (85)
T ss_dssp SCCHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHhcc
Confidence 3558999999999863
No 8
>1ysq_A HTH-type transcriptional regulator YIAJ; YAIJ, ICLR, structural genomics, protein structure initiative, midwest center for structural genomics; 1.75A {Escherichia coli}
Probab=25.21 E-value=55 Score=21.06 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=24.8
Q ss_pred cCchhhhhhh--cCcceeeCCCCCCCCCChHHHHHHHHHHHHhhhc
Q 035020 32 NNTKNIQKFM--GNRSYVEYPPEGPRPPSPEELREMARELARNKNI 75 (76)
Q Consensus 32 ~~~d~~~~~~--~~~~~~~~Ppe~~~~~~p~E~~ei~~Elar~r~~ 75 (76)
.+++.+..+. .. .+-+..++....+.+++.+||++.|++
T Consensus 77 ~~~~~~~~~l~~~~-----~~l~~~t~~t~~~~~~l~~~l~~iR~~ 117 (193)
T 1ysq_A 77 GHPDYVKSYWESHQ-----HEIQPLTRNTITELPAMFDELAHIRES 117 (193)
T ss_dssp SCHHHHHHHHHHTT-----TTCCCSSTTCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhccc-----CCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 4556677776 42 222233344456788999999999874
No 9
>2doh_C Fragment, plasminogen-binding group A streptococcal M-like PAM; lysine-binding site, kringle domains, hydrolase; HET: DIO; 2.30A {Homo sapiens} PDB: 2kj4_B 1i5k_C 2doi_C
Probab=23.64 E-value=23 Score=18.24 Aligned_cols=10 Identities=60% Similarity=0.584 Sum_probs=6.8
Q ss_pred HHHHHhhhcC
Q 035020 67 RELARNKNIR 76 (76)
Q Consensus 67 ~Elar~r~~r 76 (76)
.||+|++++|
T Consensus 8 ~eL~rLknER 17 (30)
T 2doh_C 8 AELQRLKNER 17 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5677777664
No 10
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.58 E-value=56 Score=17.48 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=14.2
Q ss_pred ChHHHHHHHHHHHHhhhc
Q 035020 58 SPEELREMARELARNKNI 75 (76)
Q Consensus 58 ~p~E~~ei~~Elar~r~~ 75 (76)
+-+|++...+|+|++|.+
T Consensus 12 Lhk~ie~KdeeIa~Lk~e 29 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 347888889999998864
No 11
>1tf1_A Negative regulator of allantoin and glyoxylate utilization operons; midwest center for structural genomics, GLCR, ligand binding domain; 1.80A {Escherichia coli} SCOP: d.110.2.2
Probab=23.54 E-value=40 Score=22.02 Aligned_cols=39 Identities=5% Similarity=0.168 Sum_probs=24.8
Q ss_pred cCchhhhhhhcCcceeeCCCCCCCCCChHHHHHHHHHHHHhhhc
Q 035020 32 NNTKNIQKFMGNRSYVEYPPEGPRPPSPEELREMARELARNKNI 75 (76)
Q Consensus 32 ~~~d~~~~~~~~~~~~~~Ppe~~~~~~p~E~~ei~~Elar~r~~ 75 (76)
.+++.+..+..+ .+-+..++....+.+++.+||++.|++
T Consensus 91 ~~~~~~~~~l~~-----~~~~~~t~~t~~~~~~l~~~l~~iR~~ 129 (198)
T 1tf1_A 91 LAEEELMSIILQ-----TGLQQFTPTTLVDMPTLLKDLEQAREL 129 (198)
T ss_dssp SCHHHHHHHHHH-----HCCCCCSTTCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhc-----CCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 455667777653 222233333456788999999999874
No 12
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=23.27 E-value=24 Score=21.54 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=8.9
Q ss_pred hhhhhhhhhhh
Q 035020 14 AKFGIYVGVPV 24 (76)
Q Consensus 14 fKFg~Yl~fPI 24 (76)
.|+|||++|--
T Consensus 20 ikwgmyiafge 30 (82)
T 3fbl_A 20 IKWGMYIAFGE 30 (82)
T ss_dssp GGHHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 58999998753
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.26 E-value=58 Score=18.11 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=14.7
Q ss_pred CChHHHHHHHHHHHHhhhc
Q 035020 57 PSPEELREMARELARNKNI 75 (76)
Q Consensus 57 ~~p~E~~ei~~Elar~r~~ 75 (76)
|.+.|.+.+++|++.+|++
T Consensus 16 p~~~d~eaLk~E~~eLk~k 34 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEK 34 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHH
Confidence 4478888888888887753
No 14
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=22.57 E-value=51 Score=22.27 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=25.5
Q ss_pred cCchhhhhhhcCcceeeCCCCCCCCCChHHHHHHHHHHHHhhhc
Q 035020 32 NNTKNIQKFMGNRSYVEYPPEGPRPPSPEELREMARELARNKNI 75 (76)
Q Consensus 32 ~~~d~~~~~~~~~~~~~~Ppe~~~~~~p~E~~ei~~Elar~r~~ 75 (76)
.+++.+..+... .|-+..++....+.+++.+||++.|++
T Consensus 146 ~~~~~~~~~l~~-----~~l~~~t~~t~~~~~~l~~~l~~iR~~ 184 (249)
T 1mkm_A 146 VPEKELKEYLKI-----VELKPKTPNTITNPRVLKRELEKIRKR 184 (249)
T ss_dssp SCHHHHHHHHHH-----CCCCCSSTTCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhc-----CCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 455667777653 233333444467789999999999874
No 15
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=22.44 E-value=99 Score=18.71 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=28.2
Q ss_pred hhhhhhhhheeeeeccCchhhhhhhcCcceeeCCCCCCCCCChHHHHHHHHHH
Q 035020 17 GIYVGVPVFLMYTFANNTKNIQKFMGNRSYVEYPPEGPRPPSPEELREMAREL 69 (76)
Q Consensus 17 g~Yl~fPI~~my~fg~~~d~~~~~~~~~~~~~~Ppe~~~~~~p~E~~ei~~El 69 (76)
+++...|+++.-++++|..|-..+...---+..++.+.+ ++++.+.-+++
T Consensus 102 a~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~---~~~l~~~i~~l 151 (170)
T 2o6l_A 102 AIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMS---STDLLNALKRV 151 (170)
T ss_dssp HHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCC---HHHHHHHHHHH
T ss_pred HHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCC---HHHHHHHHHHH
Confidence 466778998877666676665555433222344433222 56665554444
No 16
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=22.42 E-value=50 Score=17.35 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHhh
Q 035020 59 PEELREMARELARNK 73 (76)
Q Consensus 59 p~E~~ei~~Elar~r 73 (76)
-+|+..|++|++.++
T Consensus 15 eeeiqaikeeiaaik 29 (36)
T 1bb1_B 15 EEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777777654
No 17
>2qfa_C Inner centromere protein; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=21.69 E-value=53 Score=18.45 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=9.2
Q ss_pred HHHHHHHHHHh
Q 035020 62 LREMARELARN 72 (76)
Q Consensus 62 ~~ei~~Elar~ 72 (76)
++||.+|..|+
T Consensus 34 L~EIeeEA~RM 44 (47)
T 2qfa_C 34 LEEIQEEAERM 44 (47)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67888888887
No 18
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=20.71 E-value=70 Score=19.51 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=16.8
Q ss_pred CCCCChHHHHHHHHHHHHhhh
Q 035020 54 PRPPSPEELREMARELARNKN 74 (76)
Q Consensus 54 ~~~~~p~E~~ei~~Elar~r~ 74 (76)
..-..|+-.+|+.+||+|+.+
T Consensus 29 lVD~~Pe~~kel~~el~kL~~ 49 (77)
T 2cly_C 29 PVDAGPEYQQDLDRELFKLKQ 49 (77)
T ss_dssp SSSCCTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 334568999999999999865
Done!