Query 035020
Match_columns 76
No_of_seqs 96 out of 98
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 13:58:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035020.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035020hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mkma2 d.110.2.2 (A:76-246) T 48.4 5.3 0.00038 24.0 2.3 39 32-75 68-106 (171)
2 d2pq6a1 c.87.1.10 (A:8-480) (I 31.4 15 0.0011 23.5 2.5 50 17-69 380-429 (473)
3 d2o9aa1 d.110.2.2 (A:1-180) Tr 30.9 16 0.0012 21.7 2.6 39 32-75 75-113 (180)
4 d1tf1a_ d.110.2.2 (A:) Transcr 29.2 13 0.00094 22.4 1.8 38 33-75 80-117 (184)
5 d2gycw1 a.2.2.1 (W:1-60) Ribos 23.4 27 0.002 18.3 2.3 16 59-74 40-55 (60)
6 d1r73a_ a.2.2.1 (A:) Ribosomal 23.1 27 0.002 18.7 2.3 16 59-74 40-55 (66)
7 d1iira_ c.87.1.5 (A:) UDP-gluc 21.3 31 0.0022 21.2 2.6 49 17-68 317-365 (401)
8 d2zjrv1 a.2.2.1 (V:1-66) Ribos 21.1 31 0.0023 18.4 2.3 15 59-73 40-54 (66)
9 d2clyc1 f.45.1.1 (C:5-70) ATPa 20.7 54 0.004 18.0 3.3 25 50-74 21-45 (66)
10 d2jn6a1 a.4.1.19 (A:1-89) Unch 18.3 34 0.0025 18.5 2.1 46 30-75 33-81 (89)
No 1
>d1mkma2 d.110.2.2 (A:76-246) Transcriptional regulator IclR, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=48.36 E-value=5.3 Score=23.99 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=27.0
Q ss_pred cCchhhhhhhcCcceeeCCCCCCCCCChHHHHHHHHHHHHhhhc
Q 035020 32 NNTKNIQKFMGNRSYVEYPPEGPRPPSPEELREMARELARNKNI 75 (76)
Q Consensus 32 ~~~d~~~~~~~~~~~~~~Ppe~~~~~~p~E~~ei~~Elar~r~~ 75 (76)
.+++.+..+.. -.+.+..++..+.++.++.++|++.|++
T Consensus 68 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~ir~~ 106 (171)
T d1mkma2 68 VPEKELKEYLK-----IVELKPKTPNTITNPRVLKRELEKIRKR 106 (171)
T ss_dssp SCHHHHHHHHH-----HCCCCCSSTTCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhh-----hhccccCCCCCcccHHHHHHHHHHHHhh
Confidence 34556666665 3455555555677888999999998864
No 2
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase {Medicago truncatula [TaxId: 3880]}
Probab=31.41 E-value=15 Score=23.49 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=30.0
Q ss_pred hhhhhhhhheeeeeccCchhhhhhhcCcceeeCCCCCCCCCChHHHHHHHHHH
Q 035020 17 GIYVGVPVFLMYTFANNTKNIQKFMGNRSYVEYPPEGPRPPSPEELREMAREL 69 (76)
Q Consensus 17 g~Yl~fPI~~my~fg~~~d~~~~~~~~~~~~~~Ppe~~~~~~p~E~~ei~~El 69 (76)
++|-.+|.+++=.+++|++|-..+....---..-+. +-..+++.+.-+++
T Consensus 380 al~~GVP~lv~P~~~DQ~~na~rv~~~~G~G~~l~~---~~t~~~l~~ai~~v 429 (473)
T d2pq6a1 380 SICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDT---NVKREELAKLINEV 429 (473)
T ss_dssp HHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCS---SCCHHHHHHHHHHH
T ss_pred HHHcCCCEEeccchhhhHHHHHHHHHHcCeEEeeCC---CcCHHHHHHHHHHH
Confidence 577788999999999999996655321000022221 23467766655554
No 3
>d2o9aa1 d.110.2.2 (A:1-180) Transcriptional regulator IclR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.93 E-value=16 Score=21.71 Aligned_cols=39 Identities=8% Similarity=0.080 Sum_probs=26.1
Q ss_pred cCchhhhhhhcCcceeeCCCCCCCCCChHHHHHHHHHHHHhhhc
Q 035020 32 NNTKNIQKFMGNRSYVEYPPEGPRPPSPEELREMARELARNKNI 75 (76)
Q Consensus 32 ~~~d~~~~~~~~~~~~~~Ppe~~~~~~p~E~~ei~~Elar~r~~ 75 (76)
-+++.+..++.+ .+.+..++..+.+.+++.++|+..|++
T Consensus 75 l~~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~l~~ir~~ 113 (180)
T d2o9aa1 75 LSEEQVTKLLHR-----KGLHAYTHATLVSPVHLKEDLAQTRKR 113 (180)
T ss_dssp SCHHHHHHHHHS-----CCCCCSSTTCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhh-----hcccccCccccccHHHHHHHHHHhhcc
Confidence 355667777763 344444555567888899999988864
No 4
>d1tf1a_ d.110.2.2 (A:) Transcriptional regulator AllR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.17 E-value=13 Score=22.36 Aligned_cols=38 Identities=5% Similarity=0.198 Sum_probs=24.6
Q ss_pred CchhhhhhhcCcceeeCCCCCCCCCChHHHHHHHHHHHHhhhc
Q 035020 33 NTKNIQKFMGNRSYVEYPPEGPRPPSPEELREMARELARNKNI 75 (76)
Q Consensus 33 ~~d~~~~~~~~~~~~~~Ppe~~~~~~p~E~~ei~~Elar~r~~ 75 (76)
+++.+..+... .+.+..++..+.+..++.+|++++|++
T Consensus 80 ~~~e~~~~l~~-----~~~~~~t~~~~~~~~~l~~~l~~ir~~ 117 (184)
T d1tf1a_ 80 AEEELMSIILQ-----TGLQQFTPTTLVDMPTLLKDLEQAREL 117 (184)
T ss_dssp CHHHHHHHHHH-----HCCCCCSTTCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhh-----ccccccCccccCCHHHHHHHHHHHhhc
Confidence 44556665542 233444555577888899999998864
No 5
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}
Probab=23.39 E-value=27 Score=18.31 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHhhh
Q 035020 59 PEELREMARELARNKN 74 (76)
Q Consensus 59 p~E~~ei~~Elar~r~ 74 (76)
|.++..+++.+||++-
T Consensus 40 ~~~i~~~Rk~IARi~T 55 (60)
T d2gycw1 40 SHLLKQVRRDVARVKT 55 (60)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8999999999999863
No 6
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=23.07 E-value=27 Score=18.69 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHhhh
Q 035020 59 PEELREMARELARNKN 74 (76)
Q Consensus 59 p~E~~ei~~Elar~r~ 74 (76)
|.++.++++++||++-
T Consensus 40 ~~~i~~~Rk~IARi~T 55 (66)
T d1r73a_ 40 TSLIKLTKRDIARIKT 55 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7899999999999863
No 7
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}
Probab=21.26 E-value=31 Score=21.22 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=30.9
Q ss_pred hhhhhhhhheeeeeccCchhhhhhhcCcceeeCCCCCCCCCChHHHHHHHHH
Q 035020 17 GIYVGVPVFLMYTFANNTKNIQKFMGNRSYVEYPPEGPRPPSPEELREMARE 68 (76)
Q Consensus 17 g~Yl~fPI~~my~fg~~~d~~~~~~~~~~~~~~Ppe~~~~~~p~E~~ei~~E 68 (76)
++|..+|++++=.+++|.+|-..+...--=+..+.++-+ |+++.+.-++
T Consensus 317 al~~GvP~v~~P~~~DQ~~na~~l~~~G~g~~l~~~~~~---~~~l~~ai~~ 365 (401)
T d1iira_ 317 AARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPT---FDSLSAALAT 365 (401)
T ss_dssp HHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCC---HHHHHHHHHH
T ss_pred HHHhCCCEEEccccccHHHHHHHHHHCCCEEEcCcCCCC---HHHHHHHHHH
Confidence 577888988877777888876666533333445554433 6666555444
No 8
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=21.14 E-value=31 Score=18.41 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHhh
Q 035020 59 PEELREMARELARNK 73 (76)
Q Consensus 59 p~E~~ei~~Elar~r 73 (76)
|.++..+++.+||++
T Consensus 40 ~~~ik~~Rk~IARi~ 54 (66)
T d2zjrv1 40 PHRVRQLRREVAQLN 54 (66)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 789999999999986
No 9
>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.72 E-value=54 Score=18.05 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=18.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhh
Q 035020 50 PPEGPRPPSPEELREMARELARNKN 74 (76)
Q Consensus 50 Ppe~~~~~~p~E~~ei~~Elar~r~ 74 (76)
+.-+..-..|+-..|+.+||+|+.+
T Consensus 21 ~~Gg~vD~~Pe~~kel~~el~kl~~ 45 (66)
T d2clyc1 21 TSGGPVDAGPEYQQDLDRELFKLKQ 45 (66)
T ss_dssp CCSSSSSCCTHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3344445568999999999999875
No 10
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=18.32 E-value=34 Score=18.54 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=20.9
Q ss_pred eccCchhhhhhhcCcceeeC---CCCCCCCCChHHHHHHHHHHHHhhhc
Q 035020 30 FANNTKNIQKFMGNRSYVEY---PPEGPRPPSPEELREMARELARNKNI 75 (76)
Q Consensus 30 fg~~~d~~~~~~~~~~~~~~---Ppe~~~~~~p~E~~ei~~Elar~r~~ 75 (76)
+|-++.-+.+|+.+....-- +......+..+|+.++.+|.+++|++
T Consensus 33 lGIs~~tl~~W~k~~~~~~~~~~~~~~~~~~~~~ei~~L~~En~~Lk~~ 81 (89)
T d2jn6a1 33 LGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRAR 81 (89)
T ss_dssp HTSCHHHHHHHHHHHCCCSTTCSCCCCHHHHTHHHHHHHHHCGGGGGGT
T ss_pred HCCCHHHHHHHHHHHhhcccccCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 45566667777764221110 11111111233466666666666543
Done!