BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035021
         (76 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4I8E|X Chain X, Gspb Plus Alpha-2,3-Sialyl (1-Thioethyl)galactose
          Length = 391

 Score = 25.8 bits (55), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 24  WVLQDAIQIDKDLLQNSARALET--LVSVGMRMGVSKKEILQTELPSLEACVIAA 76
           W L     ++ ++L+ + +  +T   V +G+R+  S K+I +T LP LE   +AA
Sbjct: 98  WNLYTGESVNNNVLRITTQVNDTGGEVKLGLRLVTSDKKITKTNLP-LEFSQVAA 151


>pdb|3QC5|X Chain X, Gspb
 pdb|3QC6|X Chain X, Gspb
          Length = 360

 Score = 25.8 bits (55), Expect = 6.8,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 24  WVLQDAIQIDKDLLQNSARALET--LVSVGMRMGVSKKEILQTELPSLEACVIAA 76
           W L     ++ ++L+ + +  +T   V +G+R+  S K+I +T LP LE   +AA
Sbjct: 83  WNLYTGESVNNNVLRITTQVNDTGGEVKLGLRLVTSDKKITKTNLP-LEFSQVAA 136


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.135    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,820,072
Number of Sequences: 62578
Number of extensions: 46547
Number of successful extensions: 172
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 2
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)