BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035021
         (76 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9Z767|PSD_CHLPN Phosphatidylserine decarboxylase proenzyme OS=Chlamydia pneumoniae
           GN=psd PE=3 SV=1
          Length = 301

 Score = 33.9 bits (76), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 21  ICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKE 60
           + L  L +AI+ D DLL+NS    ET   +G  +G S++E
Sbjct: 260 VILLFLPNAIRFDNDLLKNSRMGFETRCLMGQSLGRSQRE 299


>sp|P53037|PSD2_YEAST Phosphatidylserine decarboxylase proenzyme 2 OS=Saccharomyces
            cerevisiae (strain ATCC 204508 / S288c) GN=PSD2 PE=1 SV=1
          Length = 1138

 Score = 32.3 bits (72), Expect = 0.82,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 21   ICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMG 55
            I + +  +    D DL++NS+  +ETLV VGM +G
Sbjct: 1045 IIIIIPHNNFMFDSDLVKNSSERIETLVKVGMSIG 1079


>sp|A8MJ83|PSD_ALKOO Phosphatidylserine decarboxylase proenzyme OS=Alkaliphilus
           oremlandii (strain OhILAs) GN=psd PE=3 SV=1
          Length = 296

 Score = 31.6 bits (70), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 26/35 (74%)

Query: 21  ICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMG 55
           + L++ + A++ID+DL++N+ + +ET V +G  +G
Sbjct: 260 VILFLKKGAVKIDRDLIENTEKHIETKVHMGEGIG 294


>sp|O14111|PSD3_SCHPO Phosphatidylserine decarboxylase proenzyme 3 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=psd3 PE=3 SV=2
          Length = 967

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 28  DAIQIDKDLLQNSARALETLVSVGMRMG 55
           +    D+DLL+NS   +ETLV +G R+G
Sbjct: 921 NVTSFDEDLLRNSKTKIETLVKMGERIG 948


>sp|Q821L3|PSD_CHLCV Phosphatidylserine decarboxylase proenzyme OS=Chlamydophila caviae
           (strain GPIC) GN=psd PE=3 SV=1
          Length = 299

 Score = 30.8 bits (68), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 30  IQIDKDLLQNSARALETLVSVGMRMGVSKKE 60
           IQ D DLL+NS   LET   +G  +G S +E
Sbjct: 269 IQFDADLLKNSRMGLETRCLMGQSLGRSLRE 299


>sp|Q5L4W1|PSD_CHLAB Phosphatidylserine decarboxylase proenzyme OS=Chlamydophila abortus
           (strain S26/3) GN=psd PE=3 SV=1
          Length = 299

 Score = 30.8 bits (68), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 29  AIQIDKDLLQNSARALETLVSVGMRMGVSKKE 60
           ++Q D DLL+NS   LET   +G  +G S +E
Sbjct: 268 SVQFDADLLKNSRMGLETRCLMGQSLGRSLRE 299


>sp|Q8RGF2|PSD_FUSNN Phosphatidylserine decarboxylase proenzyme OS=Fusobacterium
           nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
           101130 / JCM 8532 / LMG 13131) GN=psd PE=3 SV=1
          Length = 300

 Score = 30.0 bits (66), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 15  FSFLNYICLWVLQ-DAIQIDKDLLQNSARALETLVSVGMRMGVSK 58
           F F    C+ V + + + IDKD+++N+   +ET + +G + G  K
Sbjct: 255 FLFGGSTCILVFEKNKVVIDKDIIENTQNKIETRIYMGEKFGNEK 299


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.135    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,592,004
Number of Sequences: 539616
Number of extensions: 606645
Number of successful extensions: 2018
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2012
Number of HSP's gapped (non-prelim): 7
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)