Query 035021
Match_columns 76
No_of_seqs 115 out of 292
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 08:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02964 phosphatidylserine de 99.8 9.7E-20 2.1E-24 150.2 4.1 63 9-72 580-642 (644)
2 KOG2419 Phosphatidylserine dec 99.7 9.5E-19 2.1E-23 147.6 0.3 58 8-66 910-967 (975)
3 PRK00723 phosphatidylserine de 99.7 1.1E-17 2.5E-22 126.5 2.2 48 9-57 247-294 (297)
4 PRK09629 bifunctional thiosulf 99.2 6.3E-12 1.4E-16 102.5 2.9 41 9-57 567-607 (610)
5 PRK03140 phosphatidylserine de 99.1 2.6E-11 5.6E-16 90.0 2.7 41 9-57 218-258 (259)
6 PRK00044 psd phosphatidylserin 99.1 4.1E-11 8.9E-16 90.0 2.8 42 9-58 245-286 (288)
7 TIGR00163 PS_decarb phosphatid 99.1 9.8E-11 2.1E-15 85.8 2.9 41 9-57 197-237 (238)
8 PTZ00403 phosphatidylserine de 99.0 1.9E-10 4.2E-15 89.9 3.2 42 9-59 299-340 (353)
9 PRK03934 phosphatidylserine de 98.9 1E-09 2.2E-14 81.8 3.3 38 9-56 227-264 (265)
10 PF02666 PS_Dcarbxylase: Phosp 98.8 3.6E-09 7.7E-14 75.0 3.6 39 9-56 164-202 (202)
11 PLN02938 phosphatidylserine de 98.8 2.5E-09 5.4E-14 85.7 2.6 41 9-57 372-425 (428)
12 COG0688 Psd Phosphatidylserine 98.1 1E-06 2.3E-11 65.7 1.6 39 8-53 198-238 (239)
13 TIGR00164 PS_decarb_rel phosph 98.0 6.5E-06 1.4E-10 58.5 3.0 36 9-55 147-182 (189)
14 PRK05305 phosphatidylserine de 97.6 5.7E-05 1.2E-09 54.4 2.9 34 9-53 167-200 (206)
15 KOG2420 Phosphatidylserine dec 94.1 0.038 8.2E-07 44.8 2.4 37 9-54 346-382 (382)
16 cd06919 Asp_decarbox Aspartate 50.5 10 0.00022 26.2 1.4 27 27-53 22-63 (111)
17 PRK05449 aspartate alpha-decar 43.7 15 0.00032 25.9 1.4 27 27-53 23-64 (126)
18 TIGR00223 panD L-aspartate-alp 43.0 15 0.00033 25.9 1.4 27 27-53 23-64 (126)
19 cd06903 lectin_EMP46_EMP47 EMP 38.9 29 0.00062 25.4 2.4 26 10-41 20-45 (215)
20 COG0853 PanD Aspartate 1-decar 38.0 19 0.00041 25.5 1.2 27 27-53 22-63 (126)
21 PF02261 Asp_decarbox: Asparta 37.2 26 0.00055 24.4 1.8 27 27-53 23-64 (116)
22 smart00243 GAS2 Growth-Arrest- 35.6 47 0.001 21.5 2.7 18 8-25 25-42 (73)
23 cd06902 lectin_ERGIC-53_ERGL E 31.2 39 0.00084 24.8 2.0 25 9-37 20-44 (225)
24 PF02187 GAS2: Growth-Arrest-S 31.1 1.1E+02 0.0023 19.7 3.8 21 5-25 22-42 (73)
25 PRK11678 putative chaperone; P 28.5 75 0.0016 25.6 3.3 13 13-25 214-227 (450)
26 COG2429 Archaeal GTP cyclohydr 27.6 24 0.00051 27.5 0.4 58 13-71 178-235 (250)
27 COG5501 Predicted secreted pro 27.5 37 0.0008 24.6 1.3 15 39-53 105-119 (148)
28 COG5424 Pyrroloquinoline quino 27.4 3.9 8.4E-05 31.6 -3.9 40 32-72 82-121 (242)
29 PF08544 GHMP_kinases_C: GHMP 27.3 48 0.001 19.1 1.6 9 17-25 59-67 (85)
30 PF03388 Lectin_leg-like: Legu 27.2 33 0.00072 24.9 1.1 24 9-36 20-43 (229)
31 KOG3388 Predicted transcriptio 26.8 30 0.00065 24.8 0.7 7 12-18 91-97 (136)
32 PF10137 TIR-like: Predicted n 25.6 35 0.00075 23.3 0.9 30 6-37 81-112 (125)
33 PF04967 HTH_10: HTH DNA bindi 24.9 15 0.00032 21.9 -0.9 9 7-15 12-20 (53)
34 COG2090 Uncharacterized protei 23.6 64 0.0014 23.3 1.9 34 16-50 102-135 (141)
35 cd03703 aeIF5B_II aeIF5B_II: T 22.8 98 0.0021 21.0 2.6 33 17-50 15-48 (110)
36 COG3413 Predicted DNA binding 22.5 19 0.00042 25.4 -0.9 9 7-15 167-175 (215)
37 PF12141 DUF3589: Protein of u 22.2 32 0.0007 28.7 0.2 12 9-20 62-73 (498)
38 COG5119 Uncharacterized protei 21.7 43 0.00093 23.4 0.7 7 12-18 75-81 (119)
39 COG1798 DPH5 Diphthamide biosy 20.3 63 0.0014 25.3 1.4 39 12-51 126-166 (260)
No 1
>PLN02964 phosphatidylserine decarboxylase
Probab=99.78 E-value=9.7e-20 Score=150.16 Aligned_cols=63 Identities=43% Similarity=0.609 Sum_probs=55.5
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceeceeccccccCCCCchhhh
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEAC 72 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~~~~~~~~~~~~~~~~ 72 (76)
|+|||.|||||||+||| +++|+||+||++||++|+||+|+|||+||++....-...+|.++-|
T Consensus 580 E~G~F~fGGSTvVllFe-~~~i~~d~dl~~~s~~~~Et~V~~Ge~iG~~~~~~~~~~~~~~~~~ 642 (644)
T PLN02964 580 ELGYFSFGGSTVICVFE-KDAIDIDEDLLANSERSLETLVSVGMTLGVSTRTFARQVLEKSRPT 642 (644)
T ss_pred EeeeeecCCceEEEEec-CCCcccChhhhhccccccceeEecChhhcccchhhccccccccccC
Confidence 78999999999999999 9999999999999999999999999999998877555555544443
No 2
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=99.71 E-value=9.5e-19 Score=147.59 Aligned_cols=58 Identities=40% Similarity=0.543 Sum_probs=53.1
Q ss_pred EeeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceeceeccccccCCC
Q 035021 8 YVMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTEL 66 (76)
Q Consensus 8 ~~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~~~~~~~~~~ 66 (76)
-|+|||.|||||||++|| +|.+.||+|||.||++.+||+|+|||+||.+.+..++..+
T Consensus 910 dELGYFkFGGSTVI~vfe-~n~~~fDeDLl~NS~~~iETLVkvGm~iGv~i~~~~p~~~ 967 (975)
T KOG2419|consen 910 DELGYFKFGGSTVICVFE-KNNIMFDEDLLKNSSRSIETLVKVGMQIGVSIKVDDPKKL 967 (975)
T ss_pred cccceEeeCCeeEEEEEc-CCcccccHHHHhcchhhHHHHHHHHHhhceeccCCCcchh
Confidence 379999999999999999 9999999999999999999999999999988776665543
No 3
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=99.68 E-value=1.1e-17 Score=126.51 Aligned_cols=48 Identities=27% Similarity=0.321 Sum_probs=46.4
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceecee
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVS 57 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~ 57 (76)
|+|||.||||||||||| +++|+||+||++||..|+||+|+|||+||.+
T Consensus 247 E~G~F~fGGSTvvllfe-~~~i~~~~~l~~~~~~~~~~~V~~G~~ig~~ 294 (297)
T PRK00723 247 EKGYFKFGGSTVILFFE-KNKIKIDADILEQSKLGYETKVLMGESIGRK 294 (297)
T ss_pred CccccccCCCcEEEEEc-CCccccChhhhhccccCcccEEEcCHHHhhh
Confidence 68999999999999999 9999999999999999999999999999964
No 4
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.21 E-value=6.3e-12 Score=102.51 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=38.3
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceecee
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVS 57 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~ 57 (76)
|+|||+| ||||||||+ +++|+||+||.++++ |||||+||.-
T Consensus 567 E~G~F~~-GSTvvllf~-~~~~~~~~~l~~~~~------v~~Gq~lg~~ 607 (610)
T PRK09629 567 EMGRFKL-GSTAIVLFG-PNQVKWAEQLTAGSK------VQMGQALAVP 607 (610)
T ss_pred eeeEecc-CCeEEEEec-CCceecCccccCCCE------EeechhhCCc
Confidence 7899999 699999999 999999999999985 9999999953
No 5
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=99.13 E-value=2.6e-11 Score=90.02 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=37.7
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceecee
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVS 57 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~ 57 (76)
++|||.|| |||+|+|| +++++||.|+.++. +|++||+||..
T Consensus 218 e~G~F~fG-Stvvllf~-~~~~~~~~~~~~g~------~V~~Ge~ig~~ 258 (259)
T PRK03140 218 EMAYFSFG-STVVLLFE-KDMIEPDQELKSGQ------EVRLGEKIGTR 258 (259)
T ss_pred EeeeeccC-CeEEEEEe-CCccccchhhcCCC------EEEcChhhccc
Confidence 78999997 99999999 99999999999985 49999999964
No 6
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=99.10 E-value=4.1e-11 Score=89.96 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=37.8
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceeceec
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSK 58 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~~ 58 (76)
++|||.| ||||||+|| +++++||.++..+.+ |++||.||...
T Consensus 245 e~G~F~f-GStVvllfe-~~~~~~~~~v~~g~k------V~~Ge~ig~~~ 286 (288)
T PRK00044 245 EMGRFKL-GSTVINLFP-PGKVQLAEQLQAGSV------VRMGQPLAHIT 286 (288)
T ss_pred EeecccC-CCeEEEEEe-CCCceeccccCCCCE------EEcChhhcCcc
Confidence 6899999 799999999 999999999987754 99999999654
No 7
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=99.05 E-value=9.8e-11 Score=85.77 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=38.0
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceecee
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVS 57 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~ 57 (76)
++|||.| ||||||+|| ++++.|+.|+..+++ |++||.||..
T Consensus 197 e~G~F~f-GStVvllf~-~~~~~~~~~v~~g~k------V~~Ge~lg~~ 237 (238)
T TIGR00163 197 EMGYFEL-GSTVILLFE-ADAFQLSAHLAVGQE------VKIGELLAYE 237 (238)
T ss_pred EeeeEcC-CCeEEEEEe-CCCcccChhhccCCE------EEcChhhccC
Confidence 6899999 799999999 999999999999976 9999999953
No 8
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=99.01 E-value=1.9e-10 Score=89.87 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=35.8
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceeceecc
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKK 59 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~~~ 59 (76)
|+|||+| |||||+||| +++ .|+.++..+.+ |||||+||....
T Consensus 299 ElG~F~~-GSTVVllFe-~~~-~~~~~l~~g~~------Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 299 EVGEFRM-GSSIVVIFE-NKK-NFSWNVKPNQT------VSVGQRLGGVGE 340 (353)
T ss_pred eeeEecc-CCeEEEEEe-CCC-cCCcccCCCCE------EEeeeeccccCC
Confidence 7999999 999999999 776 78888877755 999999995443
No 9
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=98.90 E-value=1e-09 Score=81.76 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=33.5
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceece
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGV 56 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~ 56 (76)
|+|||.| ||||||+|| +++++|+-+ .+++|++||.||.
T Consensus 227 e~G~F~f-GSTVvllf~-~~~~~~~v~--------~g~~V~~Ge~ig~ 264 (265)
T PRK03934 227 ELGNFEM-GSTIVLFSQ-KGSLEFNLK--------AGKSVKFGESIGE 264 (265)
T ss_pred EeeEEcc-CCEEEEEEe-CCcceEccC--------CCCEEEcchhhcc
Confidence 7999999 799999999 999999743 4678999999984
No 10
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=98.81 E-value=3.6e-09 Score=74.96 Aligned_cols=39 Identities=18% Similarity=0.131 Sum_probs=33.4
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceece
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGV 56 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~ 56 (76)
++|||.| ||||+|+|| ++++. +..-..++.|++||.||.
T Consensus 164 e~G~f~f-GStvvl~f~-~~~~~-------~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 164 ELGYFRF-GSTVVLLFP-KDKIF-------EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred EeCEEec-CCeEEEEEe-CCCcc-------ccccCCCCEEEeeeEEeC
Confidence 6899999 999999999 88764 556667788999999983
No 11
>PLN02938 phosphatidylserine decarboxylase
Probab=98.80 E-value=2.5e-09 Score=85.69 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=34.8
Q ss_pred eeeeeeeCCeeEEEEEeeCCe-------------EEEchhhHhhcccceeEEEEecceecee
Q 035021 9 VMTASTFSFLNYICLWVLQDA-------------IQIDKDLLQNSARALETLVSVGMRMGVS 57 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~-------------I~~D~DLl~nS~~giET~VkmGe~IG~~ 57 (76)
|||||.| ||||||+|| ++. +.|+.++.++.+ |||||.||..
T Consensus 372 E~G~F~l-GSTVVLvFE-ap~~~~~~~~~~~~~~~~~~~~l~~G~~------Vk~Gq~LG~~ 425 (428)
T PLN02938 372 EVAVFNL-GSTVVLVFE-APVEVEPLFKVLDQSSSDFRFCVRKGDR------IRVGQALGRW 425 (428)
T ss_pred EeeeecC-CCeEEEEEe-CCcccccccccccccccCccccccCCCE------EEcchhhccc
Confidence 7999999 999999999 765 567777777766 9999999954
No 12
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=98.12 E-value=1e-06 Score=65.66 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=35.2
Q ss_pred EeeeeeeeC--CeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecce
Q 035021 8 YVMTASTFS--FLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMR 53 (76)
Q Consensus 8 ~~~GyF~FG--GSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~ 53 (76)
-++|||+|| |||+|.+|+ ++++.+++++.+++. |++|++
T Consensus 198 ~~~G~~~fGs~gstvip~~~-~~~v~~~~~v~~g~t------v~~~~~ 238 (239)
T COG0688 198 ERIGGIRFGSRGSTVLPLFA-EPRVAVGERVVAGET------VLAGEK 238 (239)
T ss_pred hhhhhhhhCCcccEEEecCC-CceeeeccccccCce------EEeeec
Confidence 368999999 999999999 999999999999988 777664
No 13
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=97.96 E-value=6.5e-06 Score=58.54 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=27.8
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceec
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMG 55 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG 55 (76)
++|+|.| ||||+++|| ++ + +-++-.+.+ |++||.+.
T Consensus 147 eiG~f~f-GStv~ll~p-~~-~--~~~v~~G~~------V~~G~tli 182 (189)
T TIGR00164 147 RIGMIRF-GSRVDLYLP-EN-A--QAQVKVGEK------VTAGETVL 182 (189)
T ss_pred EEEEEec-CCeEEEEEc-CC-C--ccccCCCCE------EEeceEEE
Confidence 6899999 599999999 87 3 334555555 99999664
No 14
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=97.58 E-value=5.7e-05 Score=54.36 Aligned_cols=34 Identities=9% Similarity=-0.091 Sum_probs=25.0
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecce
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMR 53 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~ 53 (76)
++|+|.| ||||+++|| ++. +-+...+.+ |++||.
T Consensus 167 ~~G~f~f-GStV~l~~p-~~~---~~~V~~G~k------V~~Get 200 (206)
T PRK05305 167 RFGLIRF-GSRVDVYLP-LGT---EPLVSVGQK------VVAGET 200 (206)
T ss_pred EEeEEec-CCeEEEEEc-CCC---cccccCCCE------EEcccE
Confidence 6899999 599999999 772 333444444 888874
No 15
>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=94.12 E-value=0.038 Score=44.76 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=28.1
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEeccee
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRM 54 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~I 54 (76)
.+|=|.. ||||+++||-+..++|| +....+ |||||++
T Consensus 346 ~~g~f~l-GStivl~feap~~fkf~--~~~gq~------vr~ge~l 382 (382)
T KOG2420|consen 346 RVGEFRL-GSTIVLVFEAPKDFKFD--IKAGQK------VRVGESL 382 (382)
T ss_pred ccccEec-CcEEEEEEeCCCcceee--eecCce------eeccccC
Confidence 4678999 99999999977777776 344444 8888764
No 16
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=50.50 E-value=10 Score=26.24 Aligned_cols=27 Identities=41% Similarity=0.599 Sum_probs=20.4
Q ss_pred CCeEEEchhhHhhcc---------------cceeEEEEecce
Q 035021 27 QDAIQIDKDLLQNSA---------------RALETLVSVGMR 53 (76)
Q Consensus 27 k~~I~~D~DLl~nS~---------------~giET~VkmGe~ 53 (76)
.|.|.+|+||++.+. ..+||+|-.|++
T Consensus 22 eGSitID~~Ll~aagi~~~E~V~I~Nv~NG~Rf~TYvI~g~~ 63 (111)
T cd06919 22 EGSITIDEDLLEAAGILPYEKVLVVNVNNGARFETYVIPGER 63 (111)
T ss_pred ceeEEECHHHHHhcCCCCCCEEEEEECCCCcEEEEEEEEcCC
Confidence 588999999998654 456777777764
No 17
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=43.68 E-value=15 Score=25.91 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=20.7
Q ss_pred CCeEEEchhhHhhcc---------------cceeEEEEecce
Q 035021 27 QDAIQIDKDLLQNSA---------------RALETLVSVGMR 53 (76)
Q Consensus 27 k~~I~~D~DLl~nS~---------------~giET~VkmGe~ 53 (76)
.|.|.+|+||++.+. ..+||+|-.|++
T Consensus 23 ~GSitID~~Ll~aagi~p~E~V~V~Nv~NG~Rf~TYvI~g~~ 64 (126)
T PRK05449 23 EGSITIDEDLLDAAGILENEKVQIVNVNNGARFETYVIAGER 64 (126)
T ss_pred ceeEEECHHHHHhcCCCCCCEEEEEECCCCcEEEEEEEEcCC
Confidence 588999999998643 457777777775
No 18
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=42.98 E-value=15 Score=25.87 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=21.2
Q ss_pred CCeEEEchhhHhhc---------------ccceeEEEEecce
Q 035021 27 QDAIQIDKDLLQNS---------------ARALETLVSVGMR 53 (76)
Q Consensus 27 k~~I~~D~DLl~nS---------------~~giET~VkmGe~ 53 (76)
.|.|.+|+||++.+ ...+||+|-.|++
T Consensus 23 ~GSItID~~Lm~aagi~p~E~V~V~Nv~NG~Rf~TYvI~G~~ 64 (126)
T TIGR00223 23 EGSITIDEDLLDAAGILENEKVDIVNVNNGKRFSTYAIAGKR 64 (126)
T ss_pred ceeEEECHHHHHhcCCCCCCEEEEEECCCCcEEEEEEEEcCC
Confidence 58899999999854 3467888888875
No 19
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=38.90 E-value=29 Score=25.39 Aligned_cols=26 Identities=12% Similarity=-0.083 Sum_probs=21.0
Q ss_pred eeeeeeCCeeEEEEEeeCCeEEEchhhHhhcc
Q 035021 10 MTASTFSFLNYICLWVLQDAIQIDKDLLQNSA 41 (76)
Q Consensus 10 ~GyF~FGGSTVIlLfe~k~~I~~D~DLl~nS~ 41 (76)
.+++.|+|+|++. +++|.+-+| ++.+
T Consensus 20 i~~W~~~G~t~v~----~~~IrLTp~--~s~~ 45 (215)
T cd06903 20 IPNWQTSGNPKLE----SGRIILTPP--GNQR 45 (215)
T ss_pred CCCeEEcCcEEee----CCeEEECCC--CCce
Confidence 5689999999986 688999988 5544
No 20
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=37.99 E-value=19 Score=25.51 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=20.8
Q ss_pred CCeEEEchhhHhhc---------------ccceeEEEEecce
Q 035021 27 QDAIQIDKDLLQNS---------------ARALETLVSVGMR 53 (76)
Q Consensus 27 k~~I~~D~DLl~nS---------------~~giET~VkmGe~ 53 (76)
.|.|.+|+||++.+ ...++|+|-.|++
T Consensus 22 ~GSitID~dlldaagile~EkV~I~N~nNGaRf~TYvI~g~r 63 (126)
T COG0853 22 VGSITIDEDLLDAAGILENEKVDIVNVNNGARFSTYVIAGER 63 (126)
T ss_pred EEeEEECHHHHhhcCCCCCceEEEEECCCCcEEEEEEEEccC
Confidence 37899999999854 4467888888876
No 21
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=37.18 E-value=26 Score=24.39 Aligned_cols=27 Identities=41% Similarity=0.602 Sum_probs=20.3
Q ss_pred CCeEEEchhhHhhc---------------ccceeEEEEecce
Q 035021 27 QDAIQIDKDLLQNS---------------ARALETLVSVGMR 53 (76)
Q Consensus 27 k~~I~~D~DLl~nS---------------~~giET~VkmGe~ 53 (76)
.|.|.+|+||++.+ ...+||+|-.|++
T Consensus 23 ~GSitID~~Ll~aagi~p~E~V~V~Nv~nG~Rf~TYvI~g~~ 64 (116)
T PF02261_consen 23 EGSITIDEDLLDAAGILPYEQVQVVNVNNGERFETYVIPGER 64 (116)
T ss_dssp TSCEEEEHHHHHHCT--TTBEEEEEETTT--EEEEEEEEEST
T ss_pred ceeeEECHHHHHHcCCCcCCEEEEEECCCCcEEEEEEEEccC
Confidence 58899999999854 4567888888875
No 22
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=35.63 E-value=47 Score=21.53 Aligned_cols=18 Identities=11% Similarity=-0.118 Sum_probs=12.8
Q ss_pred EeeeeeeeCCeeEEEEEe
Q 035021 8 YVMTASTFSFLNYICLWV 25 (76)
Q Consensus 8 ~~~GyF~FGGSTVIlLfe 25 (76)
-..|.|.||.|.++.+..
T Consensus 25 i~eGkYr~Gd~~~~~~vR 42 (73)
T smart00243 25 ISEGKYRFGDSQILRLVR 42 (73)
T ss_pred ecCCceEEcCCceEEEEE
Confidence 356899998887655544
No 23
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=31.18 E-value=39 Score=24.77 Aligned_cols=25 Identities=4% Similarity=-0.052 Sum_probs=20.0
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhhH
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDLL 37 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DLl 37 (76)
++++..|+|+|+| . ++.|++-+|.-
T Consensus 20 ~i~~W~~~G~t~~---~-~~~IrLTp~~~ 44 (225)
T cd06902 20 TVPFWSHGGDAIA---S-LEQVRLTPSLR 44 (225)
T ss_pred CCCceEecccEEe---c-CCEEEECCCCC
Confidence 5789999999987 4 78888888743
No 24
>PF02187 GAS2: Growth-Arrest-Specific Protein 2 Domain; InterPro: IPR003108 The growth-arrest-specific protein 2 domain is found associated with the spectrin repeat, calponin homology domain and EF hand in many proteins. It is found among others in the growth arrest-specific protein 2 [].; GO: 0007050 cell cycle arrest; PDB: 1V5R_A.
Probab=31.12 E-value=1.1e+02 Score=19.70 Aligned_cols=21 Identities=10% Similarity=-0.164 Sum_probs=14.0
Q ss_pred EEEEeeeeeeeCCeeEEEEEe
Q 035021 5 VIIYVMTASTFSFLNYICLWV 25 (76)
Q Consensus 5 ~~~~~~GyF~FGGSTVIlLfe 25 (76)
+.--..|-|-||+|..+.+..
T Consensus 22 v~rv~~GkYr~g~~~~l~~~r 42 (73)
T PF02187_consen 22 VERVSEGKYRFGDSKKLFFVR 42 (73)
T ss_dssp EEEEETTEEE-ETTEEEEEEE
T ss_pred EEEeCCCceEeCCCceEEEEE
Confidence 344467999999988666655
No 25
>PRK11678 putative chaperone; Provisional
Probab=28.49 E-value=75 Score=25.57 Aligned_cols=13 Identities=0% Similarity=-0.194 Sum_probs=7.9
Q ss_pred eeeCCeeE-EEEEe
Q 035021 13 STFSFLNY-ICLWV 25 (76)
Q Consensus 13 F~FGGSTV-IlLfe 25 (76)
|.|||+|. +.+..
T Consensus 214 ~D~GGGT~D~Svv~ 227 (450)
T PRK11678 214 VDIGGGTTDCSMLL 227 (450)
T ss_pred EEeCCCeEEEEEEE
Confidence 46788875 44444
No 26
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=27.56 E-value=24 Score=27.53 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=37.7
Q ss_pred eeeCCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEecceeceeccccccCCCCchhh
Q 035021 13 STFSFLNYICLWVLQDAIQIDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEA 71 (76)
Q Consensus 13 F~FGGSTVIlLfe~k~~I~~D~DLl~nS~~giET~VkmGe~IG~~~~~~~~~~~~~~~~ 71 (76)
|=.||-.++.+.+ ...-.--.|.+..-.+..|..+|+|=-+|......-.+---+||+
T Consensus 178 fflGGDN~ma~~p-~~s~g~v~d~i~~v~~~~~v~lkvGIGig~ta~~A~~lA~~aLe~ 235 (250)
T COG2429 178 FFLGGDNIMAVCP-GLSAGDVLDAIAEVLDDAEVDLKVGIGIGKTARDAGALATHALEK 235 (250)
T ss_pred EEecCcceEEECC-CCCchhHHHHHHHHHHhhccceEeeeccCCCHHHHHHHHHHHHHH
Confidence 4458888888777 443334456777777788899999988886655433333334443
No 27
>COG5501 Predicted secreted protein [Function unknown]
Probab=27.47 E-value=37 Score=24.61 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=11.7
Q ss_pred hcccceeEEEEecce
Q 035021 39 NSARALETLVSVGMR 53 (76)
Q Consensus 39 nS~~giET~VkmGe~ 53 (76)
+..--.||+||||+.
T Consensus 105 ~~e~~f~TRvkmgqt 119 (148)
T COG5501 105 MAELKFETRVKMGQT 119 (148)
T ss_pred CCcceEEEEEEecCc
Confidence 445568999999984
No 28
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=27.39 E-value=3.9 Score=31.57 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=32.8
Q ss_pred EchhhHhhcccceeEEEEecceeceeccccccCCCCchhhh
Q 035021 32 IDKDLLQNSARALETLVSVGMRMGVSKKEILQTELPSLEAC 72 (76)
Q Consensus 32 ~D~DLl~nS~~giET~VkmGe~IG~~~~~~~~~~~~~~~~~ 72 (76)
+|+|.-.|-.+++|-..++||.+|.+..+++..+ |..++.
T Consensus 82 ~de~~g~~e~~hidlwlr~aeAlGvs~eei~s~e-plp~~~ 121 (242)
T COG5424 82 MDEDNGYNEPNHIDLWLRLAEALGVSREEILSHE-PLPSTR 121 (242)
T ss_pred HHHhcCCCCccHHHHHHHHHHHcCCCHHHHhhcC-CCHHHH
Confidence 4666666777899999999999999999988888 766553
No 29
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.32 E-value=48 Score=19.14 Aligned_cols=9 Identities=11% Similarity=-0.193 Sum_probs=7.8
Q ss_pred CeeEEEEEe
Q 035021 17 FLNYICLWV 25 (76)
Q Consensus 17 GSTVIlLfe 25 (76)
|+||+.|++
T Consensus 59 G~~v~~l~~ 67 (85)
T PF08544_consen 59 GPTVFALCK 67 (85)
T ss_dssp SSEEEEEES
T ss_pred CCeEEEEEC
Confidence 789999994
No 30
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=27.18 E-value=33 Score=24.86 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=17.4
Q ss_pred eeeeeeeCCeeEEEEEeeCCeEEEchhh
Q 035021 9 VMTASTFSFLNYICLWVLQDAIQIDKDL 36 (76)
Q Consensus 9 ~~GyF~FGGSTVIlLfe~k~~I~~D~DL 36 (76)
+.+++.++|||+|. ++.|++-+|.
T Consensus 20 ~i~~W~~~G~t~i~----~~~IrLTp~~ 43 (229)
T PF03388_consen 20 EIPNWDIGGSTVIT----DNFIRLTPDR 43 (229)
T ss_dssp CBTTEEEEET-EEE----SSEEEEE-SS
T ss_pred ccCCEEECCeEEec----CCEEEECCCc
Confidence 35689999999864 6888888886
No 31
>KOG3388 consensus Predicted transcription regulator/nuclease, contains ParB domain [Replication, recombination and repair]
Probab=26.80 E-value=30 Score=24.79 Aligned_cols=7 Identities=14% Similarity=-0.131 Sum_probs=6.0
Q ss_pred eeeeCCe
Q 035021 12 ASTFSFL 18 (76)
Q Consensus 12 yF~FGGS 18 (76)
||+|||-
T Consensus 91 YyaFgGC 97 (136)
T KOG3388|consen 91 YYAFGGC 97 (136)
T ss_pred EEeeCcc
Confidence 9999884
No 32
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=25.62 E-value=35 Score=23.25 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=21.8
Q ss_pred EEEeeeeee--eCCeeEEEEEeeCCeEEEchhhH
Q 035021 6 IIYVMTAST--FSFLNYICLWVLQDAIQIDKDLL 37 (76)
Q Consensus 6 ~~~~~GyF~--FGGSTVIlLfe~k~~I~~D~DLl 37 (76)
.|+|+|||. +|=..+++|.+ + .+++-.||.
T Consensus 81 VifE~G~f~g~LGr~rv~~l~~-~-~v~~PSDl~ 112 (125)
T PF10137_consen 81 VIFELGLFIGKLGRERVFILVK-G-GVELPSDLS 112 (125)
T ss_pred eeehhhHHHhhcCcceEEEEEc-C-CccCCcccC
Confidence 578999996 77677777766 4 577777664
No 33
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=24.86 E-value=15 Score=21.89 Aligned_cols=9 Identities=11% Similarity=0.073 Sum_probs=7.2
Q ss_pred EEeeeeeee
Q 035021 7 IYVMTASTF 15 (76)
Q Consensus 7 ~~~~GyF~F 15 (76)
.|++|||..
T Consensus 12 A~~~GYfd~ 20 (53)
T PF04967_consen 12 AYELGYFDV 20 (53)
T ss_pred HHHcCCCCC
Confidence 378899987
No 34
>COG2090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.58 E-value=64 Score=23.25 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=29.2
Q ss_pred CCeeEEEEEeeCCeEEEchhhHhhcccceeEEEEe
Q 035021 16 SFLNYICLWVLQDAIQIDKDLLQNSARALETLVSV 50 (76)
Q Consensus 16 GGSTVIlLfe~k~~I~~D~DLl~nS~~giET~Vkm 50 (76)
.++|+.+.-. |.+-.+|.+|++.-++|-|..+.+
T Consensus 102 ~~rTl~I~ad-KAA~DldR~lV~~Lk~g~~l~i~i 135 (141)
T COG2090 102 DDRTLMIRAD-KAAADLDRELVEALKDGTELIIEI 135 (141)
T ss_pred cCceEEEecc-hhhhhhhHHHHHHHhCCCcEEEEE
Confidence 4899999999 999999999999999996666554
No 35
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=22.84 E-value=98 Score=20.97 Aligned_cols=33 Identities=6% Similarity=0.005 Sum_probs=26.6
Q ss_pred CeeEEEEEeeCCeEEEchhhHhhcccc-eeEEEEe
Q 035021 17 FLNYICLWVLQDAIQIDKDLLQNSARA-LETLVSV 50 (76)
Q Consensus 17 GSTVIlLfe~k~~I~~D~DLl~nS~~g-iET~Vkm 50 (76)
|.|+=++.. .|.+...+-++-.+..| +.|+||.
T Consensus 15 G~t~dvIl~-~GtL~~GD~Iv~g~~~Gpi~tkVRa 48 (110)
T cd03703 15 GTTIDVILY-DGTLREGDTIVVCGLNGPIVTKVRA 48 (110)
T ss_pred ceEEEEEEE-CCeEecCCEEEEccCCCCceEEEeE
Confidence 778888888 89999988888877765 7788874
No 36
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=22.49 E-value=19 Score=25.43 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=7.6
Q ss_pred EEeeeeeee
Q 035021 7 IYVMTASTF 15 (76)
Q Consensus 7 ~~~~GyF~F 15 (76)
-|+||||.+
T Consensus 167 A~~~GYFd~ 175 (215)
T COG3413 167 AYKMGYFDY 175 (215)
T ss_pred HHHcCCCCC
Confidence 378999998
No 37
>PF12141 DUF3589: Protein of unknown function (DUF3589); InterPro: IPR021988 This family of proteins is found in eukaryotes. Proteins in this family are typically between 541 and 717 amino acids in length. The function of this family is not known,
Probab=22.22 E-value=32 Score=28.68 Aligned_cols=12 Identities=8% Similarity=-0.263 Sum_probs=10.1
Q ss_pred eeeeeeeCCeeE
Q 035021 9 VMTASTFSFLNY 20 (76)
Q Consensus 9 ~~GyF~FGGSTV 20 (76)
++=||.|+||+|
T Consensus 62 ~k~WfrF~GSSV 73 (498)
T PF12141_consen 62 EKHWFRFAGSSV 73 (498)
T ss_pred HhhhhhhcCceE
Confidence 566899999997
No 38
>COG5119 Uncharacterized protein, contains ParB-like nuclease domain [General function prediction only]
Probab=21.65 E-value=43 Score=23.42 Aligned_cols=7 Identities=14% Similarity=-0.131 Sum_probs=5.8
Q ss_pred eeeeCCe
Q 035021 12 ASTFSFL 18 (76)
Q Consensus 12 yF~FGGS 18 (76)
||+|||-
T Consensus 75 YyaFgGC 81 (119)
T COG5119 75 YYAFGGC 81 (119)
T ss_pred EEeeCcc
Confidence 8999884
No 39
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=20.26 E-value=63 Score=25.31 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=30.5
Q ss_pred eeeeCCeeEEEEEeeCCe--EEEchhhHhhcccceeEEEEec
Q 035021 12 ASTFSFLNYICLWVLQDA--IQIDKDLLQNSARALETLVSVG 51 (76)
Q Consensus 12 yF~FGGSTVIlLfe~k~~--I~~D~DLl~nS~~giET~VkmG 51 (76)
.|.||+|.-|..+. .+- ..+-+-|-+|...|+=|+|-.-
T Consensus 126 ~YkFG~~vTip~~~-~~~~p~s~yd~Ik~N~~~GLHTl~lLD 166 (260)
T COG1798 126 NYKFGKTVTLPFPS-ENFFPTSPYDVIKENLERGLHTLVLLD 166 (260)
T ss_pred eeccCCceEecccc-cCcCCCcHHHHHHHhhhcCccceEEEE
Confidence 47898887777777 662 3677889999999999998653
Done!