Query 035021
Match_columns 76
No_of_seqs 115 out of 292
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 13:59:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pqh_A Aspartate 1-decarboxyla 49.2 12 0.00042 25.9 2.7 27 27-53 40-81 (143)
2 3oug_A Aspartate 1-decarboxyla 47.0 13 0.00046 24.8 2.6 27 27-53 26-67 (114)
3 2a6v_A EMP46P; beta sandwich, 44.0 6.6 0.00023 28.0 0.7 21 11-35 27-47 (226)
4 2c45_A Aspartate 1-decarboxyla 40.6 11 0.00037 26.1 1.4 27 27-53 23-64 (139)
5 2a6z_A EMP47P (FORM2); beta sa 29.3 17 0.00058 25.3 0.9 22 10-35 23-44 (222)
6 1uhe_A Aspartate 1-decarboxyla 28.9 16 0.00054 23.8 0.6 26 30-55 1-41 (97)
7 1vc3_B L-aspartate-alpha-decar 27.5 15 0.00052 23.8 0.3 24 30-53 2-40 (96)
8 3k3s_A Altronate hydrolase; st 27.3 29 0.001 22.6 1.7 19 45-63 74-92 (105)
9 3laz_A D-galactarate dehydrata 26.7 31 0.0011 22.2 1.7 19 45-63 67-85 (99)
10 2kx2_A MTH1821, putative uncha 25.6 13 0.00045 24.3 -0.2 11 7-18 58-68 (96)
11 2fvt_A Conserved hypothetical 25.5 87 0.003 20.4 3.8 26 7-33 18-46 (135)
12 3plx_B Aspartate 1-decarboxyla 25.4 18 0.0006 23.8 0.3 23 30-52 2-39 (102)
13 2fi9_A Outer membrane protein; 24.4 1.1E+02 0.0038 19.5 4.1 28 5-33 18-48 (128)
14 2ab1_A Hypothetical protein; H 23.0 1.1E+02 0.0036 19.6 3.8 43 5-48 6-66 (122)
15 2q79_A Regulatory protein E2; 21.4 28 0.00096 22.2 0.7 13 7-19 73-85 (93)
16 3tiw_A Transitional endoplasmi 21.1 90 0.0031 21.4 3.3 33 18-56 66-102 (187)
No 1
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=49.23 E-value=12 Score=25.89 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=21.8
Q ss_pred CCeEEEchhhHhh---------------cccceeEEEEecce
Q 035021 27 QDAIQIDKDLLQN---------------SARALETLVSVGMR 53 (76)
Q Consensus 27 k~~I~~D~DLl~n---------------S~~giET~VkmGe~ 53 (76)
.|.|.+|+||++. ....+||+|-.|++
T Consensus 40 ~GSITID~dLldaAgIl~~EkV~IvNvnNG~RfeTYvI~Ger 81 (143)
T 1pqh_A 40 EGTCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAER 81 (143)
T ss_dssp CCCEEEEHHHHHHHTCCTTCEEEEEETTTCCEEEEEEEEECT
T ss_pred ceeEEECHHHHHHcCCCCCCEEEEEECCCCceEEEEEEEccC
Confidence 3889999999984 34568888888886
No 2
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=46.99 E-value=13 Score=24.82 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=20.9
Q ss_pred CCeEEEchhhHhhc---------------ccceeEEEEecce
Q 035021 27 QDAIQIDKDLLQNS---------------ARALETLVSVGMR 53 (76)
Q Consensus 27 k~~I~~D~DLl~nS---------------~~giET~VkmGe~ 53 (76)
.|.|.+|+||++.. ...+||+|-.|++
T Consensus 26 ~GSitID~~Ll~aA~i~~~E~V~I~NvnNG~Rf~TYvI~Ger 67 (114)
T 3oug_A 26 VGSITIDSEIMKQANIIENEKVQVVNLNNGERLETYVIKGEP 67 (114)
T ss_dssp C-CEEEEHHHHHHTTCCTTBEEEEEETTTCCEEEEEEEEECT
T ss_pred cceEEECHHHHHHcCCCcCCEEEEEECCCCceEEEEEEEccC
Confidence 47899999999854 4568888888886
No 3
>2a6v_A EMP46P; beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.52A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a6w_A 2a6x_A
Probab=43.99 E-value=6.6 Score=27.95 Aligned_cols=21 Identities=5% Similarity=-0.062 Sum_probs=18.7
Q ss_pred eeeeeCCeeEEEEEeeCCeEEEchh
Q 035021 11 TASTFSFLNYICLWVLQDAIQIDKD 35 (76)
Q Consensus 11 GyF~FGGSTVIlLfe~k~~I~~D~D 35 (76)
.++.|+|+|++ . ++.|++-+|
T Consensus 27 ~~W~~~G~t~v---~-~~~IrLTp~ 47 (226)
T 2a6v_A 27 SQWTLGDKVKL---E-EGRFVLTPG 47 (226)
T ss_dssp TTEEEEETCEE---E-TTEEESCCS
T ss_pred CCcEEcCCeEE---e-CCEEEECCC
Confidence 58899999999 5 889999998
No 4
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=40.64 E-value=11 Score=26.05 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=21.3
Q ss_pred CCeEEEchhhHhhc---------------ccceeEEEEecce
Q 035021 27 QDAIQIDKDLLQNS---------------ARALETLVSVGMR 53 (76)
Q Consensus 27 k~~I~~D~DLl~nS---------------~~giET~VkmGe~ 53 (76)
.|.|.+|+||++.+ ...+||+|-.|++
T Consensus 23 ~GSITID~dLldaAgIl~~EkV~IvNvnNG~RfeTYvI~Ger 64 (139)
T 2c45_A 23 VGSVTIDADLMDAADLLEGEQVTIVDIDNGARLVTYAITGER 64 (139)
T ss_dssp CCEEEEEHHHHHHTTCCSSCCEEEEETTTCCEEEECEEEECT
T ss_pred ceeeEECHHHHHHcCCCCCCEEEEEECCCCceEEEEEEEccC
Confidence 48899999999854 4567888888876
No 5
>2a6z_A EMP47P (FORM2); beta sandwich, carbohydrate binding protein, cargo receptor, structural genomics, NPPSFA; 1.00A {Saccharomyces cerevisiae} SCOP: b.29.1.13 PDB: 2a70_A 2a71_A
Probab=29.33 E-value=17 Score=25.32 Aligned_cols=22 Identities=5% Similarity=-0.078 Sum_probs=19.2
Q ss_pred eeeeeeCCeeEEEEEeeCCeEEEchh
Q 035021 10 MTASTFSFLNYICLWVLQDAIQIDKD 35 (76)
Q Consensus 10 ~GyF~FGGSTVIlLfe~k~~I~~D~D 35 (76)
..++.|+|+|+| . .+.|++-+|
T Consensus 23 ~~~W~~~G~a~i---~-~~~IrLTp~ 44 (222)
T 2a6z_A 23 PNNWQTGEQASL---E-EGRIVLTSN 44 (222)
T ss_dssp CTTEEEEETCEE---E-TTEEESCCS
T ss_pred cCCcEEcccEEE---c-CCEEEECCC
Confidence 458999999999 5 899999998
No 6
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=28.94 E-value=16 Score=23.76 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=19.2
Q ss_pred EEEchhhHhh---------------cccceeEEEEecceec
Q 035021 30 IQIDKDLLQN---------------SARALETLVSVGMRMG 55 (76)
Q Consensus 30 I~~D~DLl~n---------------S~~giET~VkmGe~IG 55 (76)
|.+|+||++. ....+||+|-.|++-|
T Consensus 1 itID~dLldaA~il~~E~V~IvNvnNG~RfeTYvI~GerSG 41 (97)
T 1uhe_A 1 ITIDEDLAKLAKLREGMKVEIVDVNNGERFSTYVILGKKRG 41 (97)
T ss_dssp CEEEHHHHHHTTCCTTCEEEEEETTTCCEEEEECEEECSTT
T ss_pred CeeCHHHHHhcCCCCCCEEEEEECCCCceEEEEEEeeccCC
Confidence 4678888874 3457899999998843
No 7
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=27.54 E-value=15 Score=23.80 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=18.2
Q ss_pred EEEchhhHhhc---------------ccceeEEEEecce
Q 035021 30 IQIDKDLLQNS---------------ARALETLVSVGMR 53 (76)
Q Consensus 30 I~~D~DLl~nS---------------~~giET~VkmGe~ 53 (76)
|.+|+||++.+ ...+||+|-.|++
T Consensus 2 itID~dLl~aa~i~~~E~V~IvNvnNG~Rf~TYvI~Ger 40 (96)
T 1vc3_B 2 VTVDQDLLDAAGILPFEQVDIYDITNGARLTTYALPGER 40 (96)
T ss_dssp CEEEHHHHHHHTCCTTCEEEEEETTTCCEEEEECEEECT
T ss_pred eeeCHHHHHHcCCCCCCEEEEEECCCCceEEEEEEEccC
Confidence 67888888743 4568888888886
No 8
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=27.31 E-value=29 Score=22.56 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=15.3
Q ss_pred eEEEEecceeceecccccc
Q 035021 45 ETLVSVGMRMGVSKKEILQ 63 (76)
Q Consensus 45 ET~VkmGe~IG~~~~~~~~ 63 (76)
|..+|.|+.||++.+.+.+
T Consensus 74 e~ViKYG~~IG~At~dI~~ 92 (105)
T 3k3s_A 74 ANVIKYGLPIGYALADIAA 92 (105)
T ss_dssp CEEEETTEEEEEESSCBCT
T ss_pred CeEEECCceeEEEccccCC
Confidence 5789999999988877654
No 9
>3laz_A D-galactarate dehydratase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.92A {Escherichia coli}
Probab=26.68 E-value=31 Score=22.17 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=15.5
Q ss_pred eEEEEecceeceecccccc
Q 035021 45 ETLVSVGMRMGVSKKEILQ 63 (76)
Q Consensus 45 ET~VkmGe~IG~~~~~~~~ 63 (76)
|..+|.|+.||+..+.+..
T Consensus 67 e~ViKYG~~IG~A~~dI~~ 85 (99)
T 3laz_A 67 GEIIRYGEVIGYAVRAIPR 85 (99)
T ss_dssp CEEEETTEEEEEESSCBCT
T ss_pred CeEEECCcChhhccccCCC
Confidence 5789999999998876654
No 10
>2kx2_A MTH1821, putative uncharacterized protein; structural genomics, U function, structural genomics consortium, SGC; NMR {Methanobacterium thermoautotrophicum}
Probab=25.64 E-value=13 Score=24.29 Aligned_cols=11 Identities=18% Similarity=-0.001 Sum_probs=9.1
Q ss_pred EEeeeeeeeCCe
Q 035021 7 IYVMTASTFSFL 18 (76)
Q Consensus 7 ~~~~GyF~FGGS 18 (76)
.|++-||+| ||
T Consensus 58 ~f~keyFPF-gS 68 (96)
T 2kx2_A 58 FYEREYFPF-GS 68 (96)
T ss_dssp CBCGGGCCS-CC
T ss_pred EeeecccCC-CC
Confidence 488999999 55
No 11
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=25.54 E-value=87 Score=20.42 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=19.0
Q ss_pred EEeeeeeeeCCee---EEEEEeeCCeEEEc
Q 035021 7 IYVMTASTFSFLN---YICLWVLQDAIQID 33 (76)
Q Consensus 7 ~~~~GyF~FGGST---VIlLfe~k~~I~~D 33 (76)
-|.-|+|.++|-+ =|++++ .+...|+
T Consensus 18 ~y~~g~f~ing~~~~gsilv~p-~~~~~W~ 46 (135)
T 2fvt_A 18 AYGKGGFYFAGMSHQGSLLFLP-DAVWGWD 46 (135)
T ss_dssp CEETTEEECSSSEECSEEEECS-SCEEEES
T ss_pred EEcCCEEEECCEEEEeCEEEeC-CCccccC
Confidence 4888999998622 245677 7888897
No 12
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=25.37 E-value=18 Score=23.76 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=17.8
Q ss_pred EEEchhhHhh---------------cccceeEEEEecc
Q 035021 30 IQIDKDLLQN---------------SARALETLVSVGM 52 (76)
Q Consensus 30 I~~D~DLl~n---------------S~~giET~VkmGe 52 (76)
|.+|+||++. ....+||+|-.|+
T Consensus 2 itID~dLl~aA~i~~~E~V~I~NvnNG~Rf~TYvI~Ge 39 (102)
T 3plx_B 2 ISIDEKLLQASGILEYEKVQVVNVNNGARFETYTIATQ 39 (102)
T ss_dssp CEEEHHHHHHHTCCTTCEEEEEETTTCCEEEEECEEES
T ss_pred eeeCHHHHHHcCCCCCCEEEEEECCCCcEEEEEEEEcC
Confidence 6788888874 3456888888888
No 13
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=24.38 E-value=1.1e+02 Score=19.51 Aligned_cols=28 Identities=18% Similarity=0.081 Sum_probs=20.9
Q ss_pred EEEEeeeeeeeCCeeE---EEEEeeCCeEEEc
Q 035021 5 VIIYVMTASTFSFLNY---ICLWVLQDAIQID 33 (76)
Q Consensus 5 ~~~~~~GyF~FGGSTV---IlLfe~k~~I~~D 33 (76)
+--|.-|+|.++|-++ |++++ .+...|+
T Consensus 18 I~~y~~g~f~i~g~~~~g~i~v~p-~~~~~W~ 48 (128)
T 2fi9_A 18 IDAYGNGGFRFADMSHRGSIICIP-SGIYGID 48 (128)
T ss_dssp EEEEETTEEEETTEEEESEEEEET-TEEEEEC
T ss_pred EEEEcCCEEEECCEEEEeCEEEeC-CCeeccC
Confidence 5568999999987643 46667 7777887
No 14
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=22.96 E-value=1.1e+02 Score=19.57 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=28.4
Q ss_pred EEEEeeeeeeeCCeeE----EEEEeeCCeEEEc--------------hhhHhhcccceeEEE
Q 035021 5 VIIYVMTASTFSFLNY----ICLWVLQDAIQID--------------KDLLQNSARALETLV 48 (76)
Q Consensus 5 ~~~~~~GyF~FGGSTV----IlLfe~k~~I~~D--------------~DLl~nS~~giET~V 48 (76)
+--|.-|+|...|-++ |++++ .+...|| +|+..--....|..|
T Consensus 6 I~~y~~g~~~ing~~~~~~siiv~p-~~~~~w~w~~~g~~~~~~l~~~~l~~ll~~~~evli 66 (122)
T 2ab1_A 6 IASLSWGQMKVKGSNTTYKDCKVWP-GGSRTWDWRETGTEHSPGVQPADVKEVVEKGVQTLV 66 (122)
T ss_dssp EEEEETTEEEETTCSCEESEEEEET-TEEEEECHHHHTCCSSSCCCHHHHHHHHTTCCSEEE
T ss_pred EEEEcCCEEEECCEEEeCCCEEEEC-CccccCcccccCcCChhHCCHHHHHHHhhCCCCEEE
Confidence 3458889999987653 45677 7777888 444444444567665
No 15
>2q79_A Regulatory protein E2; beta barrel, DNA binding protein; 1.80A {Human papillomavirus type 16} SCOP: d.58.8.1 PDB: 1by9_A 1r8p_A 1zzf_A 3mi7_X
Probab=21.36 E-value=28 Score=22.16 Aligned_cols=13 Identities=0% Similarity=-0.363 Sum_probs=5.8
Q ss_pred EEeeeeeeeCCee
Q 035021 7 IYVMTASTFSFLN 19 (76)
Q Consensus 7 ~~~~GyF~FGGST 19 (76)
-+.+|+|.+||.|
T Consensus 73 ~~~~G~~~~~~~~ 85 (93)
T 2q79_A 73 TVSTGFMSIGGGT 85 (93)
T ss_dssp EEEEEEC------
T ss_pred EEEEEEEEecCCC
Confidence 4778999999986
No 16
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=21.09 E-value=90 Score=21.41 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=25.3
Q ss_pred eeEEEEEe----eCCeEEEchhhHhhcccceeEEEEecceece
Q 035021 18 LNYICLWV----LQDAIQIDKDLLQNSARALETLVSVGMRMGV 56 (76)
Q Consensus 18 STVIlLfe----~k~~I~~D~DLl~nS~~giET~VkmGe~IG~ 56 (76)
.|+..+++ .++.|++|..+.+|.. |+.|+.+-.
T Consensus 66 ~Tva~v~~~~~~~~g~Irid~~~R~N~g------V~iGD~V~V 102 (187)
T 3tiw_A 66 EAVCIVLSDDTCSDEKIRMNRVVRNNLR------VRLGDVISI 102 (187)
T ss_dssp EEEEEEEECTTSCTTEEEECHHHHHHTT------CCTTCEEEE
T ss_pred eEEEEEEECCCCCCCEEEeCHHHHhhcC------CCCCCEEEE
Confidence 56666665 2578999999999988 788877654
Done!