Query 035024
Match_columns 75
No_of_seqs 108 out of 139
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 08:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02109 DAD: DAD family; Int 100.0 2.1E-30 4.5E-35 176.8 2.4 56 1-56 44-108 (112)
2 KOG1746 Defender against cell 100.0 2.1E-30 4.6E-35 179.0 1.3 55 1-55 47-110 (115)
3 KOG1654 Microtubule-associated 66.3 2.5 5.4E-05 29.8 0.6 21 18-38 55-75 (116)
4 PF08251 Mastoparan_2: Mastopa 42.7 8.3 0.00018 18.5 0.0 8 63-70 4-11 (14)
5 PF11997 DUF3492: Domain of un 41.0 13 0.00029 27.6 0.9 24 1-26 4-28 (268)
6 PTZ00380 microtubule-associate 37.8 17 0.00037 25.3 1.0 20 18-37 51-70 (121)
7 PF02566 OsmC: OsmC-like prote 34.6 55 0.0012 19.4 2.8 28 5-32 5-32 (100)
8 PF15208 Rab15_effector: Rab15 32.0 26 0.00057 27.3 1.3 34 32-67 8-41 (236)
9 COG4913 Uncharacterized protei 27.5 38 0.00082 31.2 1.6 22 20-41 999-1020(1104)
10 COG2873 MET17 O-acetylhomoseri 27.2 20 0.00044 29.9 -0.1 25 7-37 276-300 (426)
11 PF03862 SpoVA: SpoVA protein; 21.7 84 0.0018 21.8 2.2 23 12-34 8-30 (119)
12 PF12301 CD99L2: CD99 antigen 21.4 71 0.0015 23.2 1.8 14 13-26 117-130 (169)
13 TIGR02838 spore_V_AC stage V s 20.6 63 0.0014 23.2 1.4 26 11-36 23-50 (141)
14 cd03813 GT1_like_3 This family 20.5 40 0.00087 26.0 0.4 18 5-24 8-25 (475)
15 PRK10738 hypothetical protein; 20.5 79 0.0017 21.2 1.8 29 6-34 34-62 (134)
16 PF09574 DUF2374: Protein of 20.3 1.2E+02 0.0027 18.1 2.4 19 11-29 20-38 (42)
No 1
>PF02109 DAD: DAD family; InterPro: IPR003038 Members of this family are thought to be integral membrane proteins. Some members of this family have been shown to cause apoptosis if mutated [], these proteins are known as DAD for defender against death. The family also includes the epsilon subunit of the oligosaccharyltransferase that is involved in N-linked glycosylation [].; GO: 0016021 integral to membrane
Probab=99.96 E-value=2.1e-30 Score=176.77 Aligned_cols=56 Identities=52% Similarity=0.965 Sum_probs=52.8
Q ss_pred CeeecCcchhHHHHHHHHHHHHHHHHhhhheeeecCCC-Cccc--------ceEeeehhhhhHHh
Q 035024 1 MAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKV--------NFLLCIISYNPLAF 56 (75)
Q Consensus 1 C~LVGtFPFNaFLsGF~s~VGqFVL~vsLRiQ~np~nk-~F~~--------DFvf~slVL~~~af 56 (75)
|+++||||||||||||++|||||||++|||+|+||+|| +|++ ||++||+|||++.+
T Consensus 44 c~lvgtFPFNaFLsGf~s~VG~fVL~vsLR~Q~~p~n~~~f~~is~eRafaDfv~~slvLh~~v~ 108 (112)
T PF02109_consen 44 CILVGTFPFNAFLSGFISCVGQFVLTVSLRIQLNPENKSEFPGISPERAFADFVFCSLVLHFVVF 108 (112)
T ss_pred heeecCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCChhhhhHHHHHHHHHHHHhee
Confidence 89999999999999999999999999999999999997 6865 99999999999864
No 2
>KOG1746 consensus Defender against cell death protein/oligosaccharyltransferase, epsilon subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-30 Score=178.99 Aligned_cols=55 Identities=58% Similarity=1.003 Sum_probs=52.8
Q ss_pred CeeecCcchhHHHHHHHHHHHHHHHHhhhheeeecCCC-Cccc--------ceEeeehhhhhHH
Q 035024 1 MAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNK-EFKV--------NFLLCIISYNPLA 55 (75)
Q Consensus 1 C~LVGtFPFNaFLsGF~s~VGqFVL~vsLRiQ~np~nk-~F~~--------DFvf~slVL~~~a 55 (75)
|+|||||||||||||||||||||||++|||||+|++|+ ||++ ||++||+|||+++
T Consensus 47 ~lLVgtfPFNSFLSGfIscVg~fVLavclR~q~n~qn~~~f~~iSpeRAFadFifasliLHlvv 110 (115)
T KOG1746|consen 47 CLLVGTFPFNSFLSGFISCVGQFVLAVCLRIQVNQQNKSEFKGISPERAFADFIFASLILHLVV 110 (115)
T ss_pred HhheeccChHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998 8875 9999999999986
No 3
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=66.26 E-value=2.5 Score=29.80 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhheeeecCCC
Q 035024 18 SCVGTAVLAVCLRIQVNKDNK 38 (75)
Q Consensus 18 s~VGqFVL~vsLRiQ~np~nk 38 (75)
.+||||+-.+.=|+|++|+..
T Consensus 55 ltvgqfi~iIRkRiqL~~~kA 75 (116)
T KOG1654|consen 55 LTVGQFIKIIRKRIQLSPEKA 75 (116)
T ss_pred ccHHHHHHHHHHHhccChhHe
Confidence 479999999999999998765
No 4
>PF08251 Mastoparan_2: Mastoparan peptide; InterPro: IPR013214 Mastoparan (MP) peptides I, II and III are extracted from the venom gland of Protopolybia exigua (Neotropical social wasp). They are tetradecapeptides presenting from seven to ten hydrophobic amino acid residues and from two to four lysine residues in their primary sequences. These peptides cause the degranulation of mast cells. Protopolybia-MP-I also causes haemolysis of erythrocytes.
Probab=42.70 E-value=8.3 Score=18.46 Aligned_cols=8 Identities=75% Similarity=0.895 Sum_probs=6.4
Q ss_pred hhhhcccc
Q 035024 63 LKLGKMRS 70 (75)
Q Consensus 63 ~~~~~~~~ 70 (75)
||||||-+
T Consensus 4 lklgk~v~ 11 (14)
T PF08251_consen 4 LKLGKMVI 11 (14)
T ss_pred HHHHHHHH
Confidence 68999865
No 5
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=41.00 E-value=13 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=19.0
Q ss_pred Ceee-cCcchhHHHHHHHHHHHHHHHH
Q 035024 1 MAIV-GSFPFNSFLSGVLSCVGTAVLA 26 (75)
Q Consensus 1 C~LV-GtFPFNaFLsGF~s~VGqFVL~ 26 (75)
|+++ |||||-. +|..+++=+.|=.
T Consensus 4 ~ll~EGtYPyv~--GGVSsW~~~LI~g 28 (268)
T PF11997_consen 4 CLLTEGTYPYVR--GGVSSWVHQLIRG 28 (268)
T ss_pred EEEecCcCCCCC--CchhHHHHHHHhc
Confidence 4444 8999985 9999999888765
No 6
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=37.77 E-value=17 Score=25.30 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhheeeecCC
Q 035024 18 SCVGTAVLAVCLRIQVNKDN 37 (75)
Q Consensus 18 s~VGqFVL~vsLRiQ~np~n 37 (75)
.+||||+-.+--|||++|+.
T Consensus 51 ~tV~qF~~iIRkrl~l~~~k 70 (121)
T PTZ00380 51 ATVAELEAAVRQALGTSAKK 70 (121)
T ss_pred CcHHHHHHHHHHHcCCChhH
Confidence 47999999999999999875
No 7
>PF02566 OsmC: OsmC-like protein; InterPro: IPR003718 Osmotically inducible protein C (OsmC) is a stress-induced protein found in Escherichia coli. The transcription of the osmC gene of E. coli is regulated as a function of the phase of growth and is induced during the late exponential phase when the growth rate slows before entry into stationary phase. The transcription is initiated by two overlapping promoters, osmCp1 and osmCp2 []. An organic hydroperoxide detoxification protein (OHR) from Xanthomonas campestris pv. phaseoli is highly induced by organic hydroperoxides, weakly induced by H2O2, and not induced at all by a superoxide generator. Ohr may be a new type of organic hydroperoxide detoxification protein [, ].; GO: 0006950 response to stress; PDB: 2D7V_A 2BJO_A 1USP_A 2PN2_A 2QL8_A 1N2F_A 1UKK_A 1VLA_D 3CJE_A 2ONF_B ....
Probab=34.65 E-value=55 Score=19.40 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=21.8
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhhee
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQ 32 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ 32 (75)
|.-|...|+++..+|.+..+..++=+..
T Consensus 5 ~~~P~elllaala~C~~~~~~~~a~~~g 32 (100)
T PF02566_consen 5 GPNPEELLLAALASCFAMTLRMVAEKRG 32 (100)
T ss_dssp SB-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4569999999999999999888654443
No 8
>PF15208 Rab15_effector: Rab15 effector
Probab=32.03 E-value=26 Score=27.30 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=26.0
Q ss_pred eeecCCCCcccceEeeehhhhhHHhhHHhhhhhhhc
Q 035024 32 QVNKDNKEFKVNFLLCIISYNPLAFAAEKLKLKLGK 67 (75)
Q Consensus 32 Q~np~nk~F~~DFvf~slVL~~~af~~~~~~~~~~~ 67 (75)
|+++.++ ++.-++|-++.+-+..||.|||.-||=
T Consensus 8 ~~~~~d~--~e~~~~cev~S~avvhAsqklkEYLgF 41 (236)
T PF15208_consen 8 QVAQKDS--KEVLVICEVVSQAVVHASQKLKEYLGF 41 (236)
T ss_pred ccCccCC--cccchHHHHHHHHHHHHHHHHHHHhCc
Confidence 4444443 235789999999999999999988873
No 9
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.55 E-value=38 Score=31.16 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=18.6
Q ss_pred HHHHHHHhhhheeeecCCCCcc
Q 035024 20 VGTAVLAVCLRIQVNKDNKEFK 41 (75)
Q Consensus 20 VGqFVL~vsLRiQ~np~nk~F~ 41 (75)
+..+||++|||.|+.|+..+.+
T Consensus 999 La~~vLAAsL~Yql~~~g~~~p 1020 (1104)
T COG4913 999 LASYVLAASLSYQLCPDGRTKP 1020 (1104)
T ss_pred HHHHHHHHHHHHHhCCCCCcCc
Confidence 4579999999999999987544
No 10
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=27.19 E-value=20 Score=29.94 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=18.9
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhheeeecCC
Q 035024 7 FPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 37 (75)
Q Consensus 7 FPFNaFLsGF~s~VGqFVL~vsLRiQ~np~n 37 (75)
=||||||. -|=+=|.+||||-..+|
T Consensus 276 sPfnAfl~------lqGlETL~LRmerH~~N 300 (426)
T COG2873 276 SPFNAFLL------LQGLETLSLRMERHCEN 300 (426)
T ss_pred CcHHHHHH------HhchhhhHHHHHHHHHh
Confidence 49999984 34456789999977666
No 11
>PF03862 SpoVA: SpoVA protein; InterPro: IPR005562 Members of this family are all transcribed from the spoVA operon. These proteins are poorly characterised, but are thought to be involved in dipicolinic acid transport into the developing forespore during sporulation [].
Probab=21.67 E-value=84 Score=21.78 Aligned_cols=23 Identities=9% Similarity=0.460 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhhheeee
Q 035024 12 FLSGVLSCVGTAVLAVCLRIQVN 34 (75)
Q Consensus 12 FLsGF~s~VGqFVL~vsLRiQ~n 34 (75)
+.+|.+|.+||.++-.-.+..++
T Consensus 8 lvGG~IC~igQ~l~d~~~~~~~~ 30 (119)
T PF03862_consen 8 LVGGLICVIGQLLMDFYMMFGLS 30 (119)
T ss_pred HhchHHHHHHHHHHHHHHHcCCC
Confidence 45789999999999988775554
No 12
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=21.40 E-value=71 Score=23.18 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH
Q 035024 13 LSGVLSCVGTAVLA 26 (75)
Q Consensus 13 LsGF~s~VGqFVL~ 26 (75)
++|++|.|+..++.
T Consensus 117 IaGIvsav~valvG 130 (169)
T PF12301_consen 117 IAGIVSAVVVALVG 130 (169)
T ss_pred hhhHHHHHHHHHHH
Confidence 68899999888876
No 13
>TIGR02838 spore_V_AC stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect.
Probab=20.62 E-value=63 Score=23.19 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=20.1
Q ss_pred HH-HHHHHHHHHHHHHHhhhhee-eecC
Q 035024 11 SF-LSGVLSCVGTAVLAVCLRIQ-VNKD 36 (75)
Q Consensus 11 aF-LsGF~s~VGqFVL~vsLRiQ-~np~ 36 (75)
|| .+|+||.+||..+-...|+- ++++
T Consensus 23 AFlvGG~IC~iGQ~l~d~~~~~~~lt~~ 50 (141)
T TIGR02838 23 AFLVGGLICLIGQLISDFYLRYFQFSEK 50 (141)
T ss_pred HHHhCcHHHHHHHHHHHHHHHhccCChh
Confidence 44 47899999999999987774 5543
No 14
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.55 E-value=40 Score=25.97 Aligned_cols=18 Identities=33% Similarity=0.683 Sum_probs=9.4
Q ss_pred cCcchhHHHHHHHHHHHHHH
Q 035024 5 GSFPFNSFLSGVLSCVGTAV 24 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFV 24 (75)
|||||-. +|..|-|=|.+
T Consensus 8 gtyp~~~--ggvs~w~~~~i 25 (475)
T cd03813 8 GTYPYVR--GGVSSWVHQLI 25 (475)
T ss_pred cCCCCcC--CchhHHHHHHH
Confidence 6666643 55555544444
No 15
>PRK10738 hypothetical protein; Provisional
Probab=20.54 E-value=79 Score=21.25 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=24.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhheeee
Q 035024 6 SFPFNSFLSGVLSCVGTAVLAVCLRIQVN 34 (75)
Q Consensus 6 tFPFNaFLsGF~s~VGqFVL~vsLRiQ~n 34 (75)
-=|...+|+++.+|.|.-+....=|.+.+
T Consensus 34 ~~P~EllL~aLg~Ct~i~v~~~l~k~~~~ 62 (134)
T PRK10738 34 PSPMEMVLMAAGGCSAIDVVSILQKGRQD 62 (134)
T ss_pred CCHHHHHHHHHcCchHHHHHHHHHHCCCC
Confidence 45999999999999999999987776554
No 16
>PF09574 DUF2374: Protein of unknown function (Duf2374); InterPro: IPR014175 This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC 7966.
Probab=20.33 E-value=1.2e+02 Score=18.07 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 035024 11 SFLSGVLSCVGTAVLAVCL 29 (75)
Q Consensus 11 aFLsGF~s~VGqFVL~vsL 29 (75)
.||+||..-....+...++
T Consensus 20 I~L~GF~~Vav~~~~lL~~ 38 (42)
T PF09574_consen 20 IILSGFAAVAVASIWLLSL 38 (42)
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 5899998765555554443
Done!