Query 035024
Match_columns 75
No_of_seqs 108 out of 139
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 14:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e8e_A Hypothetical protein AQ 29.3 32 0.0011 21.1 2.1 30 5-34 31-60 (132)
2 3cje_A OSMC-like protein; stru 29.1 49 0.0017 21.3 3.0 31 5-35 59-89 (167)
3 1ml8_A Hypothetical protein (C 28.8 32 0.0011 21.1 2.0 30 5-34 33-62 (134)
4 1lql_A OSMC, osmotical inducib 28.1 42 0.0014 21.9 2.6 30 5-34 63-92 (166)
5 3eer_A Organic hydroperoxide r 27.1 56 0.0019 20.8 3.0 31 5-35 50-80 (148)
6 2pn2_A Uncharacterized protein 26.0 62 0.0021 20.8 3.1 31 5-35 58-88 (155)
7 1ukk_A Osmotically inducible p 24.5 57 0.0019 20.5 2.7 32 5-36 43-74 (142)
8 1qwi_A OSMC, osmotically induc 24.4 59 0.002 20.3 2.7 32 5-36 45-76 (143)
9 2onf_A Hypothetical protein TA 24.3 61 0.0021 19.8 2.7 30 5-34 40-69 (140)
10 2bjo_A Organic hydroperoxide r 24.3 73 0.0025 19.6 3.1 30 5-34 41-70 (136)
11 1usp_A Organic hydroperoxide r 23.9 62 0.0021 20.0 2.7 30 5-34 43-72 (139)
12 2ql8_A Putative redox protein; 23.8 70 0.0024 20.0 3.0 31 5-35 45-75 (143)
13 1nye_A Osmotically inducible p 21.3 71 0.0024 20.8 2.7 32 5-36 64-95 (162)
14 1vla_A Hydroperoxide resistanc 20.2 53 0.0018 21.0 1.9 28 5-32 47-74 (150)
15 1t9i_A DNA endonuclease I-CREI 20.1 26 0.0009 22.9 0.4 18 8-25 8-25 (163)
No 1
>2e8e_A Hypothetical protein AQ_1549; osmatically induced protein; 1.70A {Aquifex aeolicus} PDB: 2e8c_A 2e8f_A 2egt_A
Probab=29.32 E-value=32 Score=21.10 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=24.8
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeee
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVN 34 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~n 34 (75)
|.=|-..|+++..+|.+..+..++=|.++.
T Consensus 31 g~nP~eLllaala~C~~~~~~~~a~~~~~~ 60 (132)
T 2e8e_A 31 GLNPMELLLVSIGSCSGVDVYHILKKKRQE 60 (132)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHhhHHHHHHHHHHHCCCC
Confidence 456999999999999999998877665554
No 2
>3cje_A OSMC-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; HET: MSE; 1.70A {Jannaschia SP}
Probab=29.13 E-value=49 Score=21.26 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=25.3
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeeec
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVNK 35 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~np 35 (75)
|.=|...|++|..+|.+..+..++=|..+..
T Consensus 59 g~nP~eLllaalaaC~~~~~~~~a~~~gi~~ 89 (167)
T 3cje_A 59 APPPLALFIAGLTGCVMTQIRAFAKRLKVTV 89 (167)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTTTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 4569999999999999999988776665544
No 3
>1ml8_A Hypothetical protein (CRP region); structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.60A {Escherichia coli} SCOP: d.227.1.2
Probab=28.78 E-value=32 Score=21.14 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=24.5
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeee
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVN 34 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~n 34 (75)
|.=|-..|+++..+|.+..+..++=|.++.
T Consensus 33 g~nP~eLllaala~C~~~~~~~~a~~~~~~ 62 (134)
T 1ml8_A 33 APSPMEMVLMAAGGCSAIDVVSILQKGRQD 62 (134)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHhccHHHHHHHHHHHcCCC
Confidence 466999999999999999988876665543
No 4
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=28.11 E-value=42 Score=21.87 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=24.8
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeee
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVN 34 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~n 34 (75)
|+=|-..|++|..+|.+..+..++=|..+.
T Consensus 63 g~nP~ELllaalaaC~~~~~~~~a~~~gi~ 92 (166)
T 1lql_A 63 GFGPLAALLSGLAACELATANLMAPAKMIT 92 (166)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 567999999999999999998876665544
No 5
>3eer_A Organic hydroperoxide resistance protein, putativ; csgid, ORHC, struc genomics; 1.45A {Vibrio cholerae o1 biovar el tor} SCOP: d.227.1.0 PDB: 3i07_A* 3lus_A*
Probab=27.06 E-value=56 Score=20.78 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=25.9
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeeec
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVNK 35 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~np 35 (75)
|+=|-..|+++..+|.+..+..++=|..+..
T Consensus 50 g~nP~eLllaalaaC~~~~~~~~a~~~gi~~ 80 (148)
T 3eer_A 50 ATNPEQLFAVGYAACFSNAILHVAREAKVAL 80 (148)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 4669999999999999999988877766654
No 6
>2pn2_A Uncharacterized protein; putative osmotic stress induced and detoxification response structural genomics; 1.95A {Psychrobacter arcticus} SCOP: d.227.1.1
Probab=25.97 E-value=62 Score=20.80 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=25.5
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeeec
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVNK 35 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~np 35 (75)
|.=|-..|+++..+|.+..+..++=|.++..
T Consensus 58 g~nP~eLllaAlaaC~~~~~~~~a~~~gi~~ 88 (155)
T 2pn2_A 58 AFSPTDLLATSLASCMLTIIGIKARDMEIDI 88 (155)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 4569999999999999999988776666654
No 7
>1ukk_A Osmotically inducible protein C; peroxidase, cysteinesulfinic acid, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.60A {Thermus thermophilus} SCOP: d.227.1.1
Probab=24.54 E-value=57 Score=20.50 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=26.9
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeeecC
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKD 36 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~np~ 36 (75)
|+=|-..|+++..+|.+..+..++=|..+..+
T Consensus 43 g~nP~eLl~aalaaC~~~~~~~~a~~~g~~~~ 74 (142)
T 1ukk_A 43 GTNPEELIAAAHAGAFSMALAASLEREGFPPK 74 (142)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 46699999999999999999988877766544
No 8
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance, hydroperoxide reductase; 1.80A {Escherichia coli} SCOP: d.227.1.1
Probab=24.39 E-value=59 Score=20.31 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=26.9
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeeecC
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKD 36 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~np~ 36 (75)
|+=|-..|+++..+|.+..+..+.=|..+..+
T Consensus 45 g~nP~eLllaala~C~~~~~~~~a~~~g~~~~ 76 (143)
T 1qwi_A 45 GTNPEELIGAAHAACFSMALSLMLGEAGFTPT 76 (143)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 46689999999999999999988877776644
No 9
>2onf_A Hypothetical protein TA0195; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE COA; 1.70A {Thermoplasma acidophilum} SCOP: d.227.1.1
Probab=24.33 E-value=61 Score=19.85 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=24.1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeee
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVN 34 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~n 34 (75)
|.=|-..|+++..+|.+..+..++=|..+.
T Consensus 40 g~~P~eLllaala~C~~~~~~~~a~~~g~~ 69 (140)
T 2onf_A 40 QLYPETLFPSVLASCLLTTFLEFKDRMGIN 69 (140)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 467899999999999999888766655543
No 10
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=24.29 E-value=73 Score=19.58 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=25.2
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeee
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVN 34 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~n 34 (75)
|+=|-..|+++..+|.+..+..+.=|..+.
T Consensus 41 g~nP~eLllaala~C~~~~~~~~a~~~g~~ 70 (136)
T 2bjo_A 41 GTNPEQLFAAGYAACFGGALEHVAKEQNIE 70 (136)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 456999999999999999998887776654
No 11
>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} SCOP: d.227.1.1 PDB: 1usp_B
Probab=23.87 E-value=62 Score=19.97 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=26.1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeee
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVN 34 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~n 34 (75)
|+=|-..|+++..+|.+..+..++=|..+.
T Consensus 43 g~nP~eLllaala~C~~~~~~~~a~~~g~~ 72 (139)
T 1usp_A 43 GTNPEQLFAAGYAACFQGALGVVSRRQKID 72 (139)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 566999999999999999999888777665
No 12
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=23.77 E-value=70 Score=20.02 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=26.3
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeeec
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVNK 35 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~np 35 (75)
|.=|-..|+++..+|.+..+..++=|.++..
T Consensus 45 g~nP~eLllaala~C~~~~~~~~a~~~g~~~ 75 (143)
T 2ql8_A 45 GTNPEQLLGLSLSTCLEATLEAVEKEHGLPH 75 (143)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5669999999999999999998877776654
No 13
>1nye_A Osmotically inducible protein C; OSMC, structural genomics, peroxiredoxin, BSGC structure funded by NIH, protein structure initiative, PSI; 2.40A {Escherichia coli} SCOP: d.227.1.1
Probab=21.26 E-value=71 Score=20.79 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=27.0
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeeecC
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKD 36 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~np~ 36 (75)
|+=|-..|++|..+|.+..+..++=|..+..+
T Consensus 64 g~nPeeLllaalaaC~~~~l~~~a~~~gi~~~ 95 (162)
T 1nye_A 64 GTNPEELIGAAHAACFSMALSLMLGEAGFTPT 95 (162)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTTTCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 46689999999999999999998887776644
No 14
>1vla_A Hydroperoxide resistance protein OSMC; TM0919, structural GE JCSG, protein structure initiative, PSI, joint center for S genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: d.227.1.2
Probab=20.18 E-value=53 Score=21.03 Aligned_cols=28 Identities=21% Similarity=0.630 Sum_probs=24.1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhhee
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQ 32 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ 32 (75)
|.=|-..|+++..+|.+..+..++=|..
T Consensus 47 g~nP~ELllaAlaaC~~~~~~~~a~~~g 74 (150)
T 1vla_A 47 APRPLELVLTGLMGCTGMDVVSILRKMK 74 (150)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4679999999999999999988776665
No 15
>1t9i_A DNA endonuclease I-CREI; protein, hydrolase/DNA complex; HET: DNA; 1.60A {Chlamydomonas reinhardtii} SCOP: d.95.2.1 PDB: 1n3f_A* 1n3e_A* 1t9j_A* 1u0d_A* 1u0c_A* 2o7m_A* 2i3p_A* 4aae_A* 1g9z_A* 1bp7_A* 1g9y_A* 3mxb_B* 2i3q_A* 4aab_A* 4aad_A* 4aaf_A* 4aag_A* 3mxb_A* 2vbo_A* 2vbn_A* ...
Probab=20.14 E-value=26 Score=22.95 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHHHH
Q 035024 8 PFNSFLSGVLSCVGTAVL 25 (75)
Q Consensus 8 PFNaFLsGF~s~VGqFVL 25 (75)
-|+++|+||+-.=|+|-+
T Consensus 8 ~F~~WLaGFiDgeG~F~i 25 (163)
T 1t9i_A 8 EFLLYLAGFVDGNGSIIA 25 (163)
T ss_dssp HHHHHHHHHHHHHCEEEE
T ss_pred hhhhheEEEEecceEEEE
Confidence 489999999999998754
Done!