Query 035024
Match_columns 75
No_of_seqs 108 out of 139
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 14:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035024.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035024hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okca_ f.42.1.1 (A:) ADP,ATP 41.4 6.6 0.00048 24.4 2.0 29 10-38 8-41 (292)
2 d2onfa1 d.227.1.1 (A:1-139) Hy 33.8 16 0.0011 21.1 2.7 30 5-34 39-68 (139)
3 d1ukka_ d.227.1.1 (A:) Hypothe 31.5 17 0.0013 21.0 2.7 31 5-35 42-72 (141)
4 d2pn2a1 d.227.1.1 (A:1-132) Un 29.5 22 0.0016 20.1 2.9 32 5-36 39-70 (132)
5 d1p8kz2 d.95.2.1 (Z:126-254) D 27.9 7.1 0.00052 23.2 0.4 19 7-25 10-28 (129)
6 d1zvpa1 d.58.18.9 (A:2-67) Hyp 27.6 15 0.0011 20.4 1.8 19 25-49 9-27 (66)
7 d1uspa_ d.227.1.1 (A:) Organic 21.7 43 0.0031 18.8 3.1 32 6-37 42-73 (137)
8 d1vlaa_ d.227.1.2 (A:) Hypothe 21.7 31 0.0023 19.7 2.5 24 6-29 42-65 (144)
9 d1dq3a3 d.95.2.2 (A:129-226) P 19.1 14 0.001 22.8 0.5 17 6-22 7-23 (98)
10 d1lqla_ d.227.1.1 (A:) Hypothe 18.5 41 0.003 19.4 2.6 24 5-28 38-61 (141)
No 1
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=41.45 E-value=6.6 Score=24.42 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHH-----hhhheeeecCCC
Q 035024 10 NSFLSGVLSCVGTAVLA-----VCLRIQVNKDNK 38 (75)
Q Consensus 10 NaFLsGF~s~VGqFVL~-----vsLRiQ~np~nk 38 (75)
..||+|.++++-+-+++ +-.|+|+...++
T Consensus 8 ~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~ 41 (292)
T d1okca_ 8 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASK 41 (292)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCC
Confidence 46888777766665544 788999976553
No 2
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=33.79 E-value=16 Score=21.06 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=23.8
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeee
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVN 34 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~n 34 (75)
|.=|...|+++..+|.+..+..++=+.++.
T Consensus 39 g~~P~elllaala~C~~~~~~~~a~~~~i~ 68 (139)
T d2onfa1 39 QLYPETLFPSVLASCLLTTFLEFKDRMGIN 68 (139)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456999999999999999888765555443
No 3
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=31.45 E-value=17 Score=21.04 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=24.2
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeeec
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVNK 35 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~np 35 (75)
|.=|...|++++.+|.+..+..+.=|..+..
T Consensus 42 gp~P~elllaala~C~~~~~~~~a~~~g~~~ 72 (141)
T d1ukka_ 42 GTNPEELIAAAHAGCFSMALAASLEREGFPP 72 (141)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4559999999999999998887665555543
No 4
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=29.54 E-value=22 Score=20.14 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=25.1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhheeeecC
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKD 36 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vsLRiQ~np~ 36 (75)
|.=|...|+++..+|.+..+..+.=+..+..+
T Consensus 39 g~~P~eLllaala~C~~~~~~~~a~~~gi~~~ 70 (132)
T d2pn2a1 39 AFSPTDLLATSLASCMLTIIGIKARDMEIDIA 70 (132)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 34699999999999999998887666555433
No 5
>d1p8kz2 d.95.2.1 (Z:126-254) DNA endonuclease I-AniI {Aspergillus nidulans [TaxId: 162425]}
Probab=27.93 E-value=7.1 Score=23.17 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=16.3
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 035024 7 FPFNSFLSGVLSCVGTAVL 25 (75)
Q Consensus 7 FPFNaFLsGF~s~VGqFVL 25 (75)
-.|+++|+||+-.=|+|-.
T Consensus 10 ~~f~~Wl~GF~dgdG~F~i 28 (129)
T d1p8kz2 10 SYFSAWLVGFIEAEGCFSV 28 (129)
T ss_dssp TTHHHHHHHHHHHHCEEEC
T ss_pred hhchHHheeeeecCceEEE
Confidence 4589999999999999854
No 6
>d1zvpa1 d.58.18.9 (A:2-67) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=27.59 E-value=15 Score=20.36 Aligned_cols=19 Identities=11% Similarity=0.424 Sum_probs=11.8
Q ss_pred HHhhhheeeecCCCCcccceEeeeh
Q 035024 25 LAVCLRIQVNKDNKEFKVNFLLCII 49 (75)
Q Consensus 25 L~vsLRiQ~np~nk~F~~DFvf~sl 49 (75)
|..+++=++++ +||+||++
T Consensus 9 LL~~m~P~L~~------g~yVF~t~ 27 (66)
T d1zvpa1 9 LLQSMSPELMA------GDYVFCTV 27 (66)
T ss_dssp HHHTCEEEECS------SCEEEEEE
T ss_pred HHHHCCceECC------CcEEEEEE
Confidence 33445445543 39999986
No 7
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=21.70 E-value=43 Score=18.82 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=26.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhheeeecCC
Q 035024 6 SFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDN 37 (75)
Q Consensus 6 tFPFNaFLsGF~s~VGqFVL~vsLRiQ~np~n 37 (75)
.=|-..+|++..+|.+..+..+.=|++++-+.
T Consensus 42 ~~P~elllaAlasC~~~t~~~~a~~~gi~~~~ 73 (137)
T d1uspa_ 42 TNPEQLFAAGYAACFQGALGVVSRRQKIDVPA 73 (137)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 34899999999999998888887777775443
No 8
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=21.67 E-value=31 Score=19.68 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=19.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhh
Q 035024 6 SFPFNSFLSGVLSCVGTAVLAVCL 29 (75)
Q Consensus 6 tFPFNaFLsGF~s~VGqFVL~vsL 29 (75)
.=|-..||++..+|.+..+..+.=
T Consensus 42 ~~P~elllaala~C~~~~~~~~a~ 65 (144)
T d1vlaa_ 42 PRPLELVLTGLMGCTGMDVVSILR 65 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999987776543
No 9
>d1dq3a3 d.95.2.2 (A:129-226) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=19.10 E-value=14 Score=22.81 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=14.4
Q ss_pred CcchhHHHHHHHHHHHH
Q 035024 6 SFPFNSFLSGVLSCVGT 22 (75)
Q Consensus 6 tFPFNaFLsGF~s~VGq 22 (75)
.|-|+-+|+|||+-=|+
T Consensus 7 efifDYWLAGFIAGdG~ 23 (98)
T d1dq3a3 7 KFIFDYWLAGFIAGDGC 23 (98)
T ss_dssp CCCHHHHHHHHHHHHEE
T ss_pred hhhHHHHHHHhhcCCCc
Confidence 36789999999998874
No 10
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=18.55 E-value=41 Score=19.44 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=20.7
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhh
Q 035024 5 GSFPFNSFLSGVLSCVGTAVLAVC 28 (75)
Q Consensus 5 GtFPFNaFLsGF~s~VGqFVL~vs 28 (75)
|.=|-..||++..+|.+..+..++
T Consensus 38 G~~P~elllaaLa~C~~~~~~~~a 61 (141)
T d1lqla_ 38 GFGPLAALLSGLAACELATANLMA 61 (141)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 566999999999999999888755
Done!