Query 035029
Match_columns 75
No_of_seqs 81 out of 107
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 08:37:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11820 DUF3339: Protein of u 100.0 2E-40 4.2E-45 211.9 8.2 61 1-61 1-61 (68)
2 KOG4580 Component of vacuolar 57.0 6.7 0.00014 27.6 1.4 25 2-26 84-108 (112)
3 PRK11513 cytochrome b561; Prov 47.8 47 0.001 23.1 4.4 36 39-74 79-114 (176)
4 COG5264 VTC1 Vacuolar transpor 46.3 11 0.00023 27.0 1.0 21 3-23 100-120 (126)
5 PF07330 DUF1467: Protein of u 39.8 65 0.0014 21.0 3.9 47 11-57 16-70 (85)
6 COG2864 FdnI Cytochrome b subu 37.4 41 0.00089 25.6 3.0 49 11-64 123-173 (218)
7 KOG4536 Predicted membrane pro 36.7 45 0.00098 27.3 3.3 30 46-75 262-292 (347)
8 PF13955 Fst_toxin: Toxin Fst, 32.5 35 0.00076 17.8 1.4 10 5-14 6-15 (21)
9 PF08172 CASP_C: CASP C termin 32.0 59 0.0013 24.5 3.1 19 41-60 224-242 (248)
10 PF02665 Nitrate_red_gam: Nitr 29.8 43 0.00094 24.2 2.0 30 44-74 181-210 (222)
11 COG3123 Uncharacterized protei 28.9 39 0.00086 23.2 1.6 13 17-29 65-77 (94)
12 PF04483 DUF565: Protein of un 28.7 49 0.0011 20.1 1.9 15 2-16 3-17 (60)
13 COG3966 DltD Protein involved 27.5 45 0.00097 27.9 2.0 14 4-17 7-20 (415)
14 TIGR02794 tolA_full TolA prote 26.4 62 0.0013 25.4 2.5 15 41-55 5-19 (346)
15 KOG4054 Uncharacterized conser 25.0 62 0.0014 24.4 2.2 17 42-58 39-55 (183)
16 PF01350 Flavi_NS4A: Flaviviru 23.0 77 0.0017 22.8 2.3 34 6-49 104-137 (144)
17 PF09680 Tiny_TM_bacill: Prote 22.1 58 0.0013 17.5 1.1 9 10-18 9-17 (24)
18 PF06011 TRP: Transient recept 21.2 3.6E+02 0.0077 21.0 5.7 54 8-69 364-417 (438)
19 PF00689 Cation_ATPase_C: Cati 20.7 1.6E+02 0.0035 19.2 3.3 44 31-74 116-159 (182)
No 1
>PF11820 DUF3339: Protein of unknown function (DUF3339); InterPro: IPR021775 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length.
Probab=100.00 E-value=2e-40 Score=211.90 Aligned_cols=61 Identities=43% Similarity=0.752 Sum_probs=59.7
Q ss_pred CCCchHHHHHHHHHHHhcCceeEEecCCCCeeeeecCcchHHHHHHHHHHHHHHHHHHHHh
Q 035029 1 MNDWAAPLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGCVWDSCAAT 61 (75)
Q Consensus 1 M~DWgPV~IavvLFvlLSPGLLfQ~PG~~r~veFgnm~TSg~sI~VHtlifF~l~ti~a~~ 61 (75)
|+|||||+||++||++||||||||+|||+|.+|||||||||+||+|||++||++++|+.+.
T Consensus 1 M~DWgpv~i~vvLFvlLsPGLLfqlPG~~r~veFgn~~Tsg~si~vHa~iff~l~~i~~va 61 (68)
T PF11820_consen 1 MADWGPVLIAVVLFVLLSPGLLFQLPGRGRVVEFGNMKTSGKSILVHALIFFALFTIFLVA 61 (68)
T ss_pred CCcchhHHHHHHHHHHhCCceEEEecCCCceEEEcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999865
No 2
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=57.03 E-value=6.7 Score=27.58 Aligned_cols=25 Identities=12% Similarity=0.297 Sum_probs=18.8
Q ss_pred CCchHHHHHHHHHHHhcCceeEEec
Q 035029 2 NDWAAPLIAAALFAFLSPGLVVQMP 26 (75)
Q Consensus 2 ~DWgPV~IavvLFvlLSPGLLfQ~P 26 (75)
.-|||.+++++||+.++--..+.++
T Consensus 84 d~~GP~~v~~vl~valivN~~~~f~ 108 (112)
T KOG4580|consen 84 DRLGPTLVCVVLLVALIVNFILAFK 108 (112)
T ss_pred CcccchHHHHHHHHHHHHHHHHhhh
Confidence 3599999999999988755444433
No 3
>PRK11513 cytochrome b561; Provisional
Probab=47.75 E-value=47 Score=23.12 Aligned_cols=36 Identities=14% Similarity=-0.057 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCC
Q 035029 39 TSIAAIFVHTVLYGCVWDSCAATKLSKLFSTTPLNL 74 (75)
Q Consensus 39 TSg~sI~VHtlifF~l~ti~a~~~~~~~~~~~~~~~ 74 (75)
....|-.+|..+|.+++.+...--+....+..|.++
T Consensus 79 ~~~~A~~~H~~LY~lli~~plsG~~~~~~~G~~~~~ 114 (176)
T PRK11513 79 MTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFA 114 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcee
Confidence 356799999999999988877665544444445443
No 4
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=46.33 E-value=11 Score=26.97 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=16.5
Q ss_pred CchHHHHHHHHHHHhcCceeE
Q 035029 3 DWAAPLIAAALFAFLSPGLVV 23 (75)
Q Consensus 3 DWgPV~IavvLFvlLSPGLLf 23 (75)
-|||.+++++|++.+.=-..+
T Consensus 100 ~~GP~lv~vvL~valivNf~~ 120 (126)
T COG5264 100 RLGPTLVCVVLLVALIVNFFL 120 (126)
T ss_pred ccCCchhHHHHHHHHHHHHhh
Confidence 599999999999987644333
No 5
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=39.75 E-value=65 Score=21.04 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=28.5
Q ss_pred HHHHHHhcCceeEE------ecCCCC--eeeeecCcchHHHHHHHHHHHHHHHHH
Q 035029 11 AALFAFLSPGLVVQ------MPAKNR--AVDFLNMKTSIAAIFVHTVLYGCVWDS 57 (75)
Q Consensus 11 vvLFvlLSPGLLfQ------~PG~~r--~veFgnm~TSg~sI~VHtlifF~l~ti 57 (75)
.+||+.|-=|+-=| .||... +.++.=.|--.....+-+++|.+.+.+
T Consensus 16 ~~lF~vLP~gvrtq~E~g~vv~Gt~~sAP~~~~l~rk~~~TTiiaavi~~~~~~~ 70 (85)
T PF07330_consen 16 IVLFAVLPFGVRTQDEAGEVVPGTDPSAPANPRLKRKALITTIIAAVIFAIIYLI 70 (85)
T ss_pred HHHHHHccCCccccCcCCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899998888666 677755 555655544444445555555444443
No 6
>COG2864 FdnI Cytochrome b subunit of formate dehydrogenase [Energy production and conversion]
Probab=37.44 E-value=41 Score=25.62 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=37.8
Q ss_pred HHHHHHhcCceeE--EecCCCCeeeeecCcchHHHHHHHHHHHHHHHHHHHHhhhh
Q 035029 11 AALFAFLSPGLVV--QMPAKNRAVDFLNMKTSIAAIFVHTVLYGCVWDSCAATKLS 64 (75)
Q Consensus 11 vvLFvlLSPGLLf--Q~PG~~r~veFgnm~TSg~sI~VHtlifF~l~ti~a~~~~~ 64 (75)
+..++++.-|+.. |.|. .++++.+...|.++|+.--+.+++++++--+.
T Consensus 123 l~~~~l~iTGivmw~~y~~-----~~~~i~~~r~s~l~h~~~a~~l~~~~~vHiy~ 173 (218)
T COG2864 123 LAIVLLLITGIVIWRPYFA-----PYFSIPLLRLSLLLHAFAAVILIFIIIVHIYM 173 (218)
T ss_pred HHHHHHHHHHHHHHhhhcc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666677777 6655 46889999999999999999999988775443
No 7
>KOG4536 consensus Predicted membrane protein [Function unknown]
Probab=36.66 E-value=45 Score=27.29 Aligned_cols=30 Identities=33% Similarity=0.370 Sum_probs=24.7
Q ss_pred HHHHHHHHHHH-HHHHhhhhhhhcCCCCCCC
Q 035029 46 VHTVLYGCVWD-SCAATKLSKLFSTTPLNLF 75 (75)
Q Consensus 46 VHtlifF~l~t-i~a~~~~~~~~~~~~~~~~ 75 (75)
+-++.||+++. ++-+|-|.+.|.+.|+|++
T Consensus 262 itt~~Yf~fy~PliYvtFLr~ff~~ep~nl~ 292 (347)
T KOG4536|consen 262 ITTVCYFAFYLPLIYVTFLRDFFQEEPLNLE 292 (347)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 45778888875 6678999999999999984
No 8
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=32.51 E-value=35 Score=17.78 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=8.2
Q ss_pred hHHHHHHHHH
Q 035029 5 AAPLIAAALF 14 (75)
Q Consensus 5 gPV~IavvLF 14 (75)
||++++++|=
T Consensus 6 aPi~VGvvl~ 15 (21)
T PF13955_consen 6 APIVVGVVLT 15 (21)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 7999998874
No 9
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=32.04 E-value=59 Score=24.53 Aligned_cols=19 Identities=5% Similarity=0.167 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035029 41 IAAIFVHTVLYGCVWDSCAA 60 (75)
Q Consensus 41 g~sI~VHtlifF~l~ti~a~ 60 (75)
.+++..|.++|+.++- ++.
T Consensus 224 ~Y~l~LH~lvf~~l~~-~~~ 242 (248)
T PF08172_consen 224 FYCLGLHLLVFFVLYY-MSH 242 (248)
T ss_pred HHHHHHHHHHHHHHHH-HHh
Confidence 5789999999999998 444
No 10
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=29.78 E-value=43 Score=24.24 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCCCCCC
Q 035029 44 IFVHTVLYGCVWDSCAATKLSKLFSTTPLNL 74 (75)
Q Consensus 44 I~VHtlifF~l~ti~a~~~~~~~~~~~~~~~ 74 (75)
..+|.++-++++.++=-||+.-.+| .|.|.
T Consensus 181 ~~~H~~l~~~l~a~iPfSkL~H~~s-~p~~y 210 (222)
T PF02665_consen 181 FWLHMLLAFVLFAYIPFSKLVHIFS-APFNY 210 (222)
T ss_dssp HHHHHHHHHHHHHHGGGSGGGGGGG---GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhHHH
Confidence 4499999999999999999999998 78875
No 11
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.90 E-value=39 Score=23.17 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=11.5
Q ss_pred hcCceeEEecCCC
Q 035029 17 LSPGLVVQMPAKN 29 (75)
Q Consensus 17 LSPGLLfQ~PG~~ 29 (75)
-.||=-||+||++
T Consensus 65 ~~~Ge~F~VpgnS 77 (94)
T COG3123 65 YTAGEVFNVPGNS 77 (94)
T ss_pred ecCCceEEcCCCC
Confidence 3689999999998
No 12
>PF04483 DUF565: Protein of unknown function (DUF565); InterPro: IPR007572 This family represents Ycf20, it is found in cyanobacteria and is also encoded in plant and algal chloroplasts; its function is unknown. As the family is exclusively found in phototrophic organisms it may therefore play a role in photosynthesis.
Probab=28.70 E-value=49 Score=20.07 Aligned_cols=15 Identities=20% Similarity=0.397 Sum_probs=11.5
Q ss_pred CCchHHHHHHHHHHH
Q 035029 2 NDWAAPLIAAALFAF 16 (75)
Q Consensus 2 ~DWgPV~IavvLFvl 16 (75)
+||.|++.+.+++..
T Consensus 3 g~wD~i~a~~iv~~~ 17 (60)
T PF04483_consen 3 GDWDVIAAAIIVLFI 17 (60)
T ss_pred chhHHHHHHHHHHHH
Confidence 699999888776543
No 13
>COG3966 DltD Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=27.54 E-value=45 Score=27.92 Aligned_cols=14 Identities=50% Similarity=0.686 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHh
Q 035029 4 WAAPLIAAALFAFL 17 (75)
Q Consensus 4 WgPV~IavvLFvlL 17 (75)
-||++||.+||+++
T Consensus 7 fGPlliA~alf~~~ 20 (415)
T COG3966 7 FGPLLIAFALFILL 20 (415)
T ss_pred hhHHHHHHHHHHHH
Confidence 59999999999875
No 14
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=26.44 E-value=62 Score=25.38 Aligned_cols=15 Identities=20% Similarity=0.569 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q 035029 41 IAAIFVHTVLYGCVW 55 (75)
Q Consensus 41 g~sI~VHtlifF~l~ 55 (75)
..|+++|.+++.+|+
T Consensus 5 ~lSv~lHvlLi~lL~ 19 (346)
T TIGR02794 5 LLSLLLHILLLGLLI 19 (346)
T ss_pred HHHHHHHHHHHHHHH
Confidence 579999999887775
No 15
>KOG4054 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.03 E-value=62 Score=24.44 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 035029 42 AAIFVHTVLYGCVWDSC 58 (75)
Q Consensus 42 ~sI~VHtlifF~l~ti~ 58 (75)
.-|+||++||+...+=.
T Consensus 39 ~lifvh~lI~v~mlak~ 55 (183)
T KOG4054|consen 39 KLIFVHALIWVLMLAKM 55 (183)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34899999998776533
No 16
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=22.97 E-value=77 Score=22.81 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCceeEEecCCCCeeeeecCcchHHHHHHHHH
Q 035029 6 APLIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTV 49 (75)
Q Consensus 6 PV~IavvLFvlLSPGLLfQ~PG~~r~veFgnm~TSg~sI~VHtl 49 (75)
-.++..++.+.|.|= ||++|. .+-|..|.++=.+
T Consensus 104 ~~lv~filmvVLiPE-----pg~QRS-----~~DN~LA~~vi~v 137 (144)
T PF01350_consen 104 VLLVFFILMVVLIPE-----PGKQRS-----QQDNQLAYFVIGV 137 (144)
T ss_pred HHHHHHHHHHhcccC-----CCCcCC-----cccchHHHHHHHH
Confidence 346667788888885 999985 4567777666444
No 17
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.09 E-value=58 Score=17.48 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=6.0
Q ss_pred HHHHHHHhc
Q 035029 10 AAALFAFLS 18 (75)
Q Consensus 10 avvLFvlLS 18 (75)
-++||++|.
T Consensus 9 ivVLFILLi 17 (24)
T PF09680_consen 9 IVVLFILLI 17 (24)
T ss_pred HHHHHHHHH
Confidence 467888763
No 18
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=21.23 E-value=3.6e+02 Score=21.01 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCceeEEecCCCCeeeeecCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 035029 8 LIAAALFAFLSPGLVVQMPAKNRAVDFLNMKTSIAAIFVHTVLYGCVWDSCAATKLSKLFST 69 (75)
Q Consensus 8 ~IavvLFvlLSPGLLfQ~PG~~r~veFgnm~TSg~sI~VHtlifF~l~ti~a~~~~~~~~~~ 69 (75)
++.++|.+.++|.+ ++|...|.+ ..-.-+.+|+++...++-.++..-.-.+++.
T Consensus 364 ~i~~~l~i~f~~~~--~~~~~~~~~------vg~vi~~i~~~v~~~~~i~~~~~~~~~~~~~ 417 (438)
T PF06011_consen 364 LITLFLLIAFLPSL--NLSEIVRTV------VGYVIIIINAIVLLILFILIIVSTIISLFRK 417 (438)
T ss_pred HHHHHHHHHHhccc--CCCccccch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566777778774 677776543 3445578899988877777766555555543
No 19
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=20.69 E-value=1.6e+02 Score=19.21 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=19.1
Q ss_pred eeeeecCcchHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCC
Q 035029 31 AVDFLNMKTSIAAIFVHTVLYGCVWDSCAATKLSKLFSTTPLNL 74 (75)
Q Consensus 31 ~veFgnm~TSg~sI~VHtlifF~l~ti~a~~~~~~~~~~~~~~~ 74 (75)
...|.+++.|..-+..=.+.....+.++-.--+.+.|+++|++.
T Consensus 116 ~~~~~~~~~N~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~l~~ 159 (182)
T PF00689_consen 116 VFRFRGIFSNKWLLIAILISIALQILIVYVPGLNRIFGTAPLPL 159 (182)
T ss_dssp CTT-STGGGSHHHHHHHHHHHHHHHHHHHSTTHHHHST----TH
T ss_pred ceecccccccchHHHHHHHHHHHHHHHhcchhhHhhhcccCCCH
Confidence 33455666665443333333333333333334788888888763
Done!