Query 035029
Match_columns 75
No_of_seqs 81 out of 107
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 14:06:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kv5_A FST, putative uncharact 29.4 25 0.00086 19.3 1.4 11 5-15 10-20 (33)
2 2r28_C Serine/threonine-protei 17.8 46 0.0016 17.2 0.9 13 57-69 12-24 (26)
3 1q16_C Cytochrome B-NR, respir 15.6 91 0.0031 20.9 2.3 30 44-74 184-213 (225)
4 1v54_D Cytochrome C oxidase su 12.6 88 0.003 21.4 1.5 17 2-18 76-92 (147)
5 1xd7_A YWNA; structural genomi 12.2 1.3E+02 0.0044 18.7 2.1 18 36-53 2-19 (145)
6 3arc_M Photosystem II reaction 10.4 1.5E+02 0.005 16.4 1.7 9 8-16 8-16 (36)
7 2y69_D Cytochrome C oxidase su 9.9 1.2E+02 0.0041 21.2 1.5 17 2-18 98-114 (169)
8 3lti_A DNA-directed RNA polyme 9.5 1.3E+02 0.0045 22.5 1.7 9 17-25 4-12 (296)
9 3sqg_B Methyl-coenzyme M reduc 8.0 1.1E+02 0.0038 24.6 0.8 30 21-50 109-138 (433)
10 4e0e_A Putative uncharacterize 8.0 1.5E+02 0.0051 20.9 1.3 16 24-40 4-19 (178)
No 1
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=29.40 E-value=25 Score=19.25 Aligned_cols=11 Identities=18% Similarity=0.123 Sum_probs=8.7
Q ss_pred hHHHHHHHHHH
Q 035029 5 AAPLIAAALFA 15 (75)
Q Consensus 5 gPV~IavvLFv 15 (75)
||+++|++|=+
T Consensus 10 aPivVGvvl~L 20 (33)
T 2kv5_A 10 APIFVGLVLEM 20 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 79999998743
No 2
>2r28_C Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform; protein-peptide complex, acetylation, calcium, methylation; 1.86A {Homo sapiens} PDB: 2jzi_B
Probab=17.80 E-value=46 Score=17.22 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=11.0
Q ss_pred HHHHhhhhhhhcC
Q 035029 57 SCAATKLSKLFST 69 (75)
Q Consensus 57 i~a~~~~~~~~~~ 69 (75)
|.|+.|+|+.|++
T Consensus 12 I~aigkmsRmf~v 24 (26)
T 2r28_C 12 IRAIGKMARVFSV 24 (26)
T ss_pred HHHHHHHHHHHHH
Confidence 6788999999975
No 3
>1q16_C Cytochrome B-NR, respiratory nitrate reductase 1 gamma chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: f.21.3.1 PDB: 1siw_C* 1y4z_C* 3ir5_C* 3ir6_C* 3ir7_C* 1y5l_C* 1y5i_C* 1y5n_C* 3egw_C*
Probab=15.55 E-value=91 Score=20.86 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCCCCCC
Q 035029 44 IFVHTVLYGCVWDSCAATKLSKLFSTTPLNL 74 (75)
Q Consensus 44 I~VHtlifF~l~ti~a~~~~~~~~~~~~~~~ 74 (75)
..+|.++-+.++..+--||+.-.++ .|.|.
T Consensus 184 ~~~Hi~~~~~~l~~~Pfskl~Hi~~-ap~n~ 213 (225)
T 1q16_C 184 FRLHLVLGMTLFLLFPFSRLIHIWS-VPVEY 213 (225)
T ss_dssp HHHHHHHHHHHHHHGGGSGGGGGGG-CCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhHHH
Confidence 3899999999999999999999888 56664
No 4
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=12.56 E-value=88 Score=21.40 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=11.3
Q ss_pred CCchHHHHHHHHHHHhc
Q 035029 2 NDWAAPLIAAALFAFLS 18 (75)
Q Consensus 2 ~DWgPV~IavvLFvlLS 18 (75)
.+|.+|+-++.+|+-+|
T Consensus 76 gewK~v~g~v~~~i~~s 92 (147)
T 1v54_D 76 NEWKTVVGAAMFFIGFT 92 (147)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHH
Confidence 46777777776666554
No 5
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=12.18 E-value=1.3e+02 Score=18.70 Aligned_cols=18 Identities=17% Similarity=0.144 Sum_probs=11.9
Q ss_pred cCcchHHHHHHHHHHHHH
Q 035029 36 NMKTSIAAIFVHTVLYGC 53 (75)
Q Consensus 36 nm~TSg~sI~VHtlifF~ 53 (75)
.|+|+....-+|+++|.+
T Consensus 2 ~M~s~~~~yAl~~L~~La 19 (145)
T 1xd7_A 2 SLINSRLAVAIHILSLIS 19 (145)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 467778888999998876
No 6
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=10.41 E-value=1.5e+02 Score=16.36 Aligned_cols=9 Identities=67% Similarity=0.980 Sum_probs=5.3
Q ss_pred HHHHHHHHH
Q 035029 8 LIAAALFAF 16 (75)
Q Consensus 8 ~IavvLFvl 16 (75)
.||++||++
T Consensus 8 fiAt~Lfi~ 16 (36)
T 3arc_M 8 LIATALFVL 16 (36)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666654
No 7
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=9.92 E-value=1.2e+02 Score=21.23 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=11.3
Q ss_pred CCchHHHHHHHHHHHhc
Q 035029 2 NDWAAPLIAAALFAFLS 18 (75)
Q Consensus 2 ~DWgPV~IavvLFvlLS 18 (75)
.+|.+|+-++.+|+-++
T Consensus 98 gEWK~V~ggv~~~i~~s 114 (169)
T 2y69_D 98 NEWKTVVGAAMFFIGFT 114 (169)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHH
Confidence 46777777776666554
No 8
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=9.49 E-value=1.3e+02 Score=22.51 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=7.3
Q ss_pred hcCceeEEe
Q 035029 17 LSPGLVVQM 25 (75)
Q Consensus 17 LSPGLLfQ~ 25 (75)
+|||.-|+-
T Consensus 4 ~SPGv~f~~ 12 (296)
T 3lti_A 4 MSPGVFFDS 12 (296)
T ss_dssp CCCEEEEEE
T ss_pred CCCEEEEec
Confidence 689999973
No 9
>3sqg_B Methyl-coenzyme M reductase, beta subunit; anaerobic methane oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE P6G; 2.10A {Uncultured archaeon}
Probab=8.01 E-value=1.1e+02 Score=24.63 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=24.7
Q ss_pred eeEEecCCCCeeeeecCcchHHHHHHHHHH
Q 035029 21 LVVQMPAKNRAVDFLNMKTSIAAIFVHTVL 50 (75)
Q Consensus 21 LLfQ~PG~~r~veFgnm~TSg~sI~VHtli 50 (75)
+|.|+|-+.---|+..--|+.++-++|++|
T Consensus 109 llvqvPs~Rlaa~y~~~~~~~a~A~~~aIi 138 (433)
T 3sqg_B 109 MMVQPPTARILSDYSVGLTASMGALTHAII 138 (433)
T ss_dssp EEEECCGGGCSSBTTHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhhhhhhHHHHHHHHHHHHHHH
Confidence 789999876566777778888888999886
No 10
>4e0e_A Putative uncharacterized protein; DUF4450 family, structural genomics, joint center for struct genomics, JCSG; 2.90A {Bacteroides thetaiotaomicron}
Probab=7.97 E-value=1.5e+02 Score=20.86 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=12.5
Q ss_pred EecCCCCeeeeecCcch
Q 035029 24 QMPAKNRAVDFLNMKTS 40 (75)
Q Consensus 24 Q~PG~~r~veFgnm~TS 40 (75)
|+||.++.+.|| .+++
T Consensus 4 ~~p~~~Gnirfg-i~~g 19 (178)
T 4e0e_A 4 QLTPPAGTFRLG-ISKG 19 (178)
T ss_dssp CCCCSSSEEEEE-EEET
T ss_pred cCCCCCceEEEE-EEcC
Confidence 789999999998 4433
Done!