Query 035029
Match_columns 75
No_of_seqs 81 out of 107
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 14:06:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035029.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035029hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y5ic1 f.21.3.1 (C:1-225) Res 44.7 6 0.00044 25.5 2.2 32 43-75 183-214 (225)
2 d1e32a3 d.31.1.1 (A:107-200) M 13.6 30 0.0022 20.7 1.0 24 17-40 40-63 (94)
3 d1jb0m_ f.23.19.1 (M:) Subunit 12.9 21 0.0015 18.1 0.1 12 11-22 10-21 (31)
4 d1tmka_ c.37.1.1 (A:) Thymidyl 11.5 76 0.0056 19.1 2.5 23 27-49 1-23 (214)
5 d2axtm1 f.23.35.1 (M:1-36) Pho 11.4 60 0.0044 16.7 1.7 9 8-16 8-16 (36)
6 d1uf3a_ d.159.1.6 (A:) Hypothe 11.2 58 0.0043 18.1 1.7 15 22-38 214-228 (228)
7 d1hbnb2 d.58.31.2 (B:2-188) Be 10.9 22 0.0016 24.2 -0.4 30 21-50 111-142 (187)
8 d1ylfa1 a.4.5.55 (A:5-142) Hyp 10.5 82 0.006 17.9 2.3 16 39-54 3-18 (138)
9 d1e6vb2 d.58.31.2 (B:7-189) Be 10.0 23 0.0017 23.9 -0.5 30 21-50 107-138 (183)
10 d1e6yb2 d.58.31.2 (B:2002-2185 9.8 17 0.0012 24.7 -1.3 30 21-50 108-139 (184)
No 1
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=44.75 E-value=6 Score=25.45 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCC
Q 035029 43 AIFVHTVLYGCVWDSCAATKLSKLFSTTPLNLF 75 (75)
Q Consensus 43 sI~VHtlifF~l~ti~a~~~~~~~~~~~~~~~~ 75 (75)
.--+|.++.++++..+=-||+.-.++. |+|.+
T Consensus 183 ~~~~H~~~~~~fl~y~PfSKl~Hi~~a-P~~yl 214 (225)
T d1y5ic1 183 IFRLHLVLGMTLFLLFPFSRLIHIWSV-PVEYL 214 (225)
T ss_dssp HHHHHHHHHHHHHHHGGGSGGGGGGGC-CGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHH
Confidence 356899999999999999999999975 98864
No 2
>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2, P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.62 E-value=30 Score=20.70 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=19.7
Q ss_pred hcCceeEEecCCCCeeeeecCcch
Q 035029 17 LSPGLVVQMPAKNRAVDFLNMKTS 40 (75)
Q Consensus 17 LSPGLLfQ~PG~~r~veFgnm~TS 40 (75)
++.|=.|.+-|..|.|||-=++|.
T Consensus 40 v~~gD~f~v~g~~r~VEFKVv~~d 63 (94)
T d1e32a3 40 IRKGDIFLVRGGMRAVEFKVVETD 63 (94)
T ss_dssp EETTCEEEEEETTEEEEEEEEEES
T ss_pred ccCCCEEEEccCCeeEEEEEEeec
Confidence 467889999999999999766653
No 3
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=12.90 E-value=21 Score=18.08 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=7.4
Q ss_pred HHHHHHhcCcee
Q 035029 11 AALFAFLSPGLV 22 (75)
Q Consensus 11 vvLFvlLSPGLL 22 (75)
++|-+.|.||+|
T Consensus 10 valvial~pg~l 21 (31)
T d1jb0m_ 10 VALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445567777764
No 4
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.55 E-value=76 Score=19.12 Aligned_cols=23 Identities=0% Similarity=0.036 Sum_probs=19.0
Q ss_pred CCCCeeeeecCcchHHHHHHHHH
Q 035029 27 AKNRAVDFLNMKTSIAAIFVHTV 49 (75)
Q Consensus 27 G~~r~veFgnm~TSg~sI~VHtl 49 (75)
||++.+-|-...-||+|-.++.+
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L 23 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNIL 23 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEECCCCCcHHHHHHHH
Confidence 78888888888888888887754
No 5
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.41 E-value=60 Score=16.72 Aligned_cols=9 Identities=67% Similarity=0.980 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 035029 8 LIAAALFAF 16 (75)
Q Consensus 8 ~IavvLFvl 16 (75)
+||.+||++
T Consensus 8 ~iAt~LFil 16 (36)
T d2axtm1 8 LIATALFVL 16 (36)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555554
No 6
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=11.21 E-value=58 Score=18.14 Aligned_cols=15 Identities=13% Similarity=0.381 Sum_probs=10.0
Q ss_pred eEEecCCCCeeeeecCc
Q 035029 22 VVQMPAKNRAVDFLNMK 38 (75)
Q Consensus 22 LfQ~PG~~r~veFgnm~ 38 (75)
+.++.++ .+||||.+
T Consensus 214 ~i~~~~~--~ie~~~~~ 228 (228)
T d1uf3a_ 214 LLDLRAR--KLETGNVR 228 (228)
T ss_dssp EEETTTT--EEEEEECC
T ss_pred EEEccCC--EEEEEeeC
Confidence 4555555 78998864
No 7
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.92 E-value=22 Score=24.16 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=24.1
Q ss_pred eeEEecCCC--CeeeeecCcchHHHHHHHHHH
Q 035029 21 LVVQMPAKN--RAVDFLNMKTSIAAIFVHTVL 50 (75)
Q Consensus 21 LLfQ~PG~~--r~veFgnm~TSg~sI~VHtli 50 (75)
+|.|+|-+. .--||..--|+..+-++|++|
T Consensus 111 llvqvPs~Ri~~aa~Y~v~~t~~~~A~~~aIi 142 (187)
T d1hbnb2 111 ALVQVPSARFDVAAEYSAAPLVTATAFVQAII 142 (187)
T ss_dssp EEEECCHHHHHTCSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 788999763 155788888999999999987
No 8
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}
Probab=10.55 E-value=82 Score=17.92 Aligned_cols=16 Identities=25% Similarity=0.007 Sum_probs=12.6
Q ss_pred chHHHHHHHHHHHHHH
Q 035029 39 TSIAAIFVHTVLYGCV 54 (75)
Q Consensus 39 TSg~sI~VHtlifF~l 54 (75)
++..++.||+++|.+.
T Consensus 3 s~~~~~Av~~L~~la~ 18 (138)
T d1ylfa1 3 SSRFSIAVHILSILKN 18 (138)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHh
Confidence 5677889999998763
No 9
>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=9.97 E-value=23 Score=23.93 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=23.9
Q ss_pred eeEEecCCCC--eeeeecCcchHHHHHHHHHH
Q 035029 21 LVVQMPAKNR--AVDFLNMKTSIAAIFVHTVL 50 (75)
Q Consensus 21 LLfQ~PG~~r--~veFgnm~TSg~sI~VHtli 50 (75)
+|.|+|-+.- --||.---|+..+-++|++|
T Consensus 107 llvqvPs~Ri~~aa~y~v~~~~~~~A~~~aIi 138 (183)
T d1e6vb2 107 LLVQLPSERVKVMADPYSGTLQAGMAVVHAII 138 (183)
T ss_dssp EEEECCHHHHTTCSSSSTHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 6889997622 45788888999999999986
No 10
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=9.85 E-value=17 Score=24.68 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=23.4
Q ss_pred eeEEecCCCC--eeeeecCcchHHHHHHHHHH
Q 035029 21 LVVQMPAKNR--AVDFLNMKTSIAAIFVHTVL 50 (75)
Q Consensus 21 LLfQ~PG~~r--~veFgnm~TSg~sI~VHtli 50 (75)
+|.|+|-+.- --||..--|+..+-++|++|
T Consensus 108 llvqvPs~Ri~~aa~Y~~~~t~~~~A~~~aIi 139 (184)
T d1e6yb2 108 LLIQSPKSRIIAGADFMSATTVGAAAVTQTIM 139 (184)
T ss_dssp EEEECCHHHHHTSSSSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHhhhcchhHHHHHHHHHHHHHHH
Confidence 6889997622 25788888999999999987
Done!