BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035030
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 11 TGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLP 57
TG SMNP R+ GPAV + N++ WIY PI+GA+ G Y V P
Sbjct: 177 TGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP 223
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 5 LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
L A TG SMNP R+ GPAV + N++ WIY PI+GA+ Y V P+
Sbjct: 180 LFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 233
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 8 GPSTGGSMNPVRTLGPAVA--VNNYKAIWIYLTAPILGALCGAGTYSAVKLP 57
G +GG +NP T+ ++ K+++ Y+TA LGA+ GAG V P
Sbjct: 67 GHISGGHINPAVTVAMVCTRKISIAKSVF-YITAQCLGAIIGAGILYLVTPP 117
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 5 LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
L A TG SMNP R+ GPAV + N++ WIY PI+GA+ Y V P+
Sbjct: 180 LFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 233
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 8 GPSTGGSMNPVRTLGPAVA--VNNYKAIWIYLTAPILGALCGAGTYSAVKLP 57
G +GG +NP T+ ++ K+++ Y+TA LGA+ GAG V P
Sbjct: 67 GHISGGHINPAVTVAMVCTRKISIAKSVF-YITAQCLGAIIGAGILYLVTPP 117
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 5 LIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
L A TG SMNP R+ GPAV + N++ WIY PI+GA+ Y V P+
Sbjct: 219 LFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 272
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 8 GPSTGGSMNPVRTLGPAVA--VNNYKAIWIYLTAPILGALCGAGTYSAVKLP 57
G +GG +NP T+ ++ K+++ Y+TA LGA+ GAG V P
Sbjct: 106 GHISGGHINPAVTVAMVCTRKISIAKSVF-YITAQCLGAIIGAGILYLVTPP 156
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 11 TGGSMNPVRTLGPAVAVNNYK-AIWIYLTAPILGALCGAGTYSAVKLP 57
TG SMNP R+ GPAV +N + A W++ PI+GA+ A Y + P
Sbjct: 181 TGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFP 228
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 8 GPSTGGSMNPVRTLGPAVAVNNYKAI---WIYLTAPILGALCGAGTYSAV 54
GP +GG +NP TL A+ V N ++ + Y+ A ++GA+ GAG V
Sbjct: 62 GPVSGGHINPAITL--ALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 11 TGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
TG MNP R+ PA+ N+ W+Y P++GA G+ Y + P
Sbjct: 179 TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 11 TGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
TG MNP R+ PA+ N+ W+Y P++GA G+ Y + P
Sbjct: 179 TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 11 TGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEEDT 61
TG MNP R+ PA+ N+ W+Y P++GA G+ Y + P +
Sbjct: 175 TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKS 225
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 11 TGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPE 58
TG MNP R+ PA+ N+ W+Y P++GA G+ Y + P
Sbjct: 173 TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 220
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 11 TGGSMNPVRTLGPAVAVNNY-KAIWIYLTAPILGALCGAGTYSAVKL-------PEEDTD 62
TG +NP R+ GPAVA ++ WIY PILGA + K P +D+D
Sbjct: 219 TGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTTNPGQDSD 278
Query: 63 A 63
A
Sbjct: 279 A 279
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 2 LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEE 59
L L+A TG +NP R+ G +V +N++ WI+ P +GA Y + P
Sbjct: 180 LGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRS 237
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 2 LNILIAGPSTGGSMNPVRTLGPAVAVNNYKAIWIYLTAPILGALCGAGTYSAVKLPEE 59
L L+A TG +NP R+ G AV +N+ WI+ P +G Y + P
Sbjct: 178 LGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFILAPRS 235
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 5 LIAGPSTGGSMNPVRTLGPAVAVNNY--KAIWIYLTAPILGALCGA 48
LI+ P T S+NP R+ G A+ V + + +W++ API+G GA
Sbjct: 201 LISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGA 246
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 8 GPSTGGSMNPVRTLGP-----AVAVNNYKAIWIYLTAPILGALCGAGTYS 52
G TG S+NP RT GP + +N ++ IY+ PI+GA+ A Y+
Sbjct: 192 GNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYN 241
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 11 TGGSMNPVRTLGPAVA--VNNYKAIWIYLTAPILGALCGAGTYSA 53
+GG +NP T G +A V+ +A+ +Y+ A LGA+CG G A
Sbjct: 96 SGGHINPAVTFGLFLARKVSLLRAL-VYMIAQCLGAICGVGLVKA 139
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 11 TGGSMNPVRTLGPAVA--VNNYKAIWIYLTAPILGALCGAGTYSA 53
+GG +NP T G +A V+ +A+ +Y+ A LGA+CG G A
Sbjct: 119 SGGHINPAVTFGLFLARKVSLLRAL-VYMIAQCLGAICGVGLVKA 162
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 11 TGGSMNPVRTLGPAVA--VNNYKAIWIYLTAPILGALCGAGTYSA 53
+GG +NP T G +A V +A+ +Y+ A LGA+CG G A
Sbjct: 119 SGGHINPAVTFGLFLARKVELLRAL-VYMIAQCLGAICGVGLVKA 162
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 11 TGGSMNPVRTLGPAVA--VNNYKAIWIYLTAPILGALCGAGTYSA 53
+GG +NP T G +A V+ +A+ +Y+ A LGA+CG G A
Sbjct: 96 SGGHINPAVTFGLFLARKVSLLRAL-VYMIAQCLGAICGVGLVKA 139
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 11 TGGSMNPVRTLGPAVA--VNNYKAIWIYLTAPILGALCGAGTYSA 53
+GG +NP T G +A V +A+ +Y+ A LGA+CG G A
Sbjct: 115 SGGHINPAVTFGLFLARKVELLRAL-VYMIAQCLGAICGVGLVKA 158
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 8 GPSTGGSMNPVRTLGP--------AVAVNNYKAIWIYLTAPILGALCGAGTYS 52
G +G S+NP RT GP + NY + IY+ PI+GA+ A TY
Sbjct: 191 GNISGSSLNPARTFGPYLNDMIFAGTDLWNYYS--IYVIGPIVGAVLAALTYQ 241
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 8 GPSTGGSMNPVRTLGPA----------VAVNNYKAIWIYLT---APILGALCGAGTY 51
GP TG +MNP R GP VA + I +L PI+GA+ GA Y
Sbjct: 195 GPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAY 251
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 8 GPSTGGSMNPVRTLGPA----------VAVNNYKAIWIYLT---APILGALCGAGTY 51
GP TG +MNP R GP VA + I +L PI+GA+ GA Y
Sbjct: 195 GPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAY 251
>pdb|3HRD|A Chain A, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|E Chain E, Crystal Structure Of Nicotinate Dehydrogenase
Length = 425
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 18 VRTLGPAVAVN-NYKAIWIYLTAPILGALCGAGTYSAVKLPEEDTDALAK 66
V +GP V N A ++Y P+ GA G G A E +ALAK
Sbjct: 322 VHCMGPYVVPNVRVDAKFVYTNNPMSGAFRGFGVPQASVCHEGQMNALAK 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,350,724
Number of Sequences: 62578
Number of extensions: 79002
Number of successful extensions: 167
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 38
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)